==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 03-MAR-04 1VBZ . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5961.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 69.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 179 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 124.2 41.2 28.7 77.8 2 5 A E - 0 0 91 1,-0.1 2,-0.2 80,-0.0 80,-0.0 0.178 360.0-100.8 -47.4 173.4 40.0 30.2 81.1 3 6 A T - 0 0 41 80,-0.1 -1,-0.1 1,-0.1 80,-0.1 -0.681 28.0-114.1-103.5 157.0 42.4 31.5 83.7 4 7 A R - 0 0 194 -2,-0.2 -1,-0.1 81,-0.2 0, 0.0 -0.467 50.9 -73.4 -84.1 159.9 43.7 29.9 86.9 5 8 A P - 0 0 80 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.151 59.1-178.5 -52.2 143.7 42.9 31.2 90.4 6 9 A N - 0 0 11 53,-0.2 57,-0.1 -3,-0.1 50,-0.1 -0.969 43.5-120.8-147.4 159.3 44.7 34.4 91.3 7 10 A H S S+ 0 0 38 -2,-0.3 49,-2.2 55,-0.1 2,-0.4 0.719 102.8 62.0 -69.7 -21.0 45.1 36.9 94.1 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.7 78,-0.2 2,-0.5 -0.918 73.1-151.2-114.3 131.8 43.9 39.5 91.7 9 12 A I E -AB 54 83A 0 45,-2.4 45,-2.5 -2,-0.4 2,-0.6 -0.862 11.7-145.6-102.6 131.3 40.5 39.6 90.0 10 13 A Y E -AB 53 82A 50 72,-2.5 72,-1.6 -2,-0.5 2,-0.4 -0.872 19.2-171.2 -97.4 123.6 40.3 41.2 86.6 11 14 A I E +AB 52 81A 0 41,-2.9 41,-2.6 -2,-0.6 2,-0.3 -0.916 10.0 163.7-117.8 142.4 37.1 43.0 86.0 12 15 A N E +AB 51 80A 29 68,-2.5 68,-2.2 -2,-0.4 39,-0.2 -0.843 45.9 68.7-145.0-176.7 35.9 44.6 82.8 13 16 A N S S+ 0 0 43 37,-0.7 38,-0.2 -2,-0.3 2,-0.1 0.821 72.4 156.9 70.2 31.2 32.8 45.9 81.0 14 17 A L - 0 0 2 36,-2.1 2,-0.7 -3,-0.1 -1,-0.2 -0.473 56.9 -85.8 -85.6 160.7 32.9 48.7 83.5 15 18 A N > - 0 0 37 59,-0.2 3,-1.2 1,-0.2 35,-0.2 -0.554 37.0-157.9 -71.7 111.5 31.3 52.1 82.8 16 19 A E T 3 S+ 0 0 112 -2,-0.7 -1,-0.2 1,-0.3 34,-0.1 0.527 81.3 72.7 -69.7 -4.1 33.9 54.0 81.0 17 20 A K T 3 S+ 0 0 79 2,-0.1 2,-0.5 33,-0.0 -1,-0.3 0.205 74.4 102.1 -97.1 18.1 32.5 57.3 81.9 18 21 A I S < S- 0 0 20 -3,-1.2 -4,-0.0 2,-0.0 5,-0.0 -0.879 76.4-115.9-106.5 127.1 33.6 57.2 85.5 19 22 A K > - 0 0 147 -2,-0.5 4,-2.6 1,-0.1 5,-0.2 -0.261 28.2-116.3 -58.3 139.9 36.6 59.1 86.8 20 23 A K H > S+ 0 0 108 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.845 109.9 51.1 -41.0 -54.8 39.4 56.9 88.1 21 24 A D H > S+ 0 0 99 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.954 113.3 43.5 -53.2 -59.1 39.4 58.1 91.7 22 25 A E H > S+ 0 0 88 1,-0.2 4,-3.4 2,-0.2 5,-0.2 0.927 112.5 53.2 -54.5 -50.9 35.6 57.6 92.1 23 26 A L H X S+ 0 0 8 -4,-2.6 4,-2.6 1,-0.2 5,-0.3 0.930 107.8 50.4 -52.2 -48.9 35.7 54.2 90.4 24 27 A K H X S+ 0 0 70 -4,-2.7 4,-1.8 -5,-0.2 -1,-0.2 0.882 114.5 46.4 -59.3 -35.4 38.5 52.9 92.6 25 28 A K H X S+ 0 0 129 -4,-1.8 4,-1.8 -5,-0.2 -2,-0.2 0.965 111.4 47.9 -72.2 -52.8 36.5 54.0 95.6 26 29 A S H >X S+ 0 0 30 -4,-3.4 4,-1.3 1,-0.2 3,-1.0 0.952 111.1 52.2 -52.1 -54.5 33.1 52.6 94.6 27 30 A L H >X S+ 0 0 0 -4,-2.6 4,-2.5 1,-0.3 3,-1.1 0.923 107.9 51.5 -47.9 -50.8 34.7 49.3 93.7 28 31 A H H 3X S+ 0 0 90 -4,-1.8 4,-1.8 -5,-0.3 -1,-0.3 0.834 102.6 62.8 -56.8 -31.8 36.3 49.2 97.1 29 32 A A H << S+ 0 0 71 -4,-1.8 -1,-0.3 -3,-1.0 -2,-0.2 0.869 114.7 29.4 -62.9 -35.5 32.8 49.9 98.5 30 33 A I H << S+ 0 0 36 -4,-1.3 -2,-0.2 -3,-1.1 -1,-0.2 0.703 123.9 45.5-100.8 -19.4 31.4 46.6 97.2 31 34 A F H >< S+ 0 0 0 -4,-2.5 3,-1.9 -5,-0.2 4,-0.3 0.650 87.2 83.2 -98.1 -15.8 34.5 44.4 97.2 32 35 A S G >< S+ 0 0 50 -4,-1.8 3,-1.8 -5,-0.3 -1,-0.1 0.842 80.9 67.3 -57.2 -34.4 36.0 45.1 100.6 33 36 A R G 3 S+ 0 0 171 1,-0.3 -1,-0.3 -4,-0.2 -2,-0.1 0.642 90.8 64.9 -63.4 -13.0 33.6 42.6 102.3 34 37 A F G < S- 0 0 20 -3,-1.9 -1,-0.3 1,-0.3 2,-0.2 0.560 120.1 -64.3 -87.2 -7.4 35.4 39.8 100.5 35 38 A G S < S- 0 0 23 -3,-1.8 -1,-0.3 -4,-0.3 0, 0.0 -0.661 75.9 -35.7 141.3 162.3 38.7 40.3 102.2 36 39 A Q - 0 0 121 -2,-0.2 21,-1.7 -3,-0.1 2,-0.5 -0.095 55.2-144.8 -46.6 142.3 41.6 42.7 102.7 37 40 A I E -C 56 0A 27 19,-0.2 19,-0.3 1,-0.1 3,-0.1 -0.965 14.3-167.4-118.6 120.0 42.4 44.6 99.5 38 41 A L E - 0 0 55 17,-2.5 2,-0.3 -2,-0.5 18,-0.2 0.856 68.9 -43.0 -72.1 -33.1 46.0 45.4 98.8 39 42 A D E -C 55 0A 66 16,-1.2 16,-3.0 2,-0.0 2,-0.4 -0.948 44.0-127.8 175.5 162.8 45.0 47.8 96.0 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.6 14,-0.2 14,-0.2 -0.997 21.8-155.5-131.1 127.4 42.8 48.5 93.0 41 44 A L E +C 53 0A 69 12,-2.5 12,-2.1 -2,-0.4 2,-0.3 -0.921 17.2 170.2-112.8 125.4 44.2 49.6 89.8 42 45 A V E +C 52 0A 11 -2,-0.6 2,-0.3 10,-0.2 10,-0.1 -0.965 6.7 179.2-130.9 144.3 42.3 51.5 87.2 43 46 A S - 0 0 41 8,-0.6 8,-0.5 5,-0.4 7,-0.1 -0.996 21.2-156.3-145.3 145.1 43.3 53.3 84.1 44 47 A R + 0 0 106 -2,-0.3 5,-0.1 5,-0.2 -1,-0.0 0.180 51.8 128.6-108.7 16.9 41.3 55.2 81.5 45 48 A S S > S- 0 0 58 1,-0.1 4,-2.9 4,-0.0 -2,-0.1 -0.158 77.1 -99.7 -67.6 166.7 43.6 54.8 78.6 46 49 A L T 4 S+ 0 0 150 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.893 123.9 37.1 -53.6 -42.3 42.5 53.5 75.3 47 50 A K T 4 S+ 0 0 170 1,-0.1 -1,-0.2 3,-0.0 -4,-0.0 0.831 126.4 34.0 -83.7 -33.2 43.8 50.1 76.1 48 51 A M T >4 S+ 0 0 53 2,-0.0 3,-1.2 3,-0.0 -5,-0.4 0.556 84.2 116.1-102.7 -8.0 42.9 49.9 79.8 49 52 A R T 3< S+ 0 0 98 -4,-2.9 -5,-0.2 1,-0.2 -33,-0.1 -0.172 74.2 29.8 -58.1 155.4 39.7 51.9 80.1 50 53 A G T 3 S+ 0 0 11 1,-0.2 -36,-2.1 -35,-0.2 -37,-0.7 0.558 108.3 84.5 74.1 6.5 36.6 49.9 81.2 51 54 A Q E < -A 12 0A 34 -3,-1.2 -8,-0.6 -8,-0.5 2,-0.3 -0.884 52.7-170.3-135.1 169.9 38.6 47.4 83.2 52 55 A A E -AC 11 42A 1 -41,-2.6 -41,-2.9 -2,-0.3 2,-0.5 -0.991 19.3-138.5-157.6 158.1 40.1 47.1 86.7 53 56 A F E -AC 10 41A 61 -12,-2.1 -12,-2.5 -2,-0.3 2,-0.6 -0.942 16.3-167.9-122.9 105.9 42.4 45.0 88.7 54 57 A V E -AC 9 40A 0 -45,-2.5 -45,-2.4 -2,-0.5 2,-0.7 -0.846 11.7-154.9 -92.9 126.0 41.2 44.4 92.2 55 58 A I E -AC 8 39A 0 -16,-3.0 -17,-2.5 -2,-0.6 -16,-1.2 -0.845 9.3-167.4-111.6 105.5 44.1 42.9 94.2 56 59 A F E - C 0 37A 0 -49,-2.2 -19,-0.2 -2,-0.7 -20,-0.1 -0.504 23.7-134.4 -85.2 150.5 43.1 40.8 97.2 57 60 A K S S+ 0 0 94 -21,-1.7 2,-0.5 -2,-0.2 -1,-0.1 0.908 92.9 40.3 -70.7 -43.6 45.5 39.6 99.9 58 61 A E S >> S- 0 0 124 -22,-0.3 3,-1.8 1,-0.1 4,-1.1 -0.936 78.8-132.8-115.3 129.1 44.2 36.0 100.0 59 62 A V H 3> S+ 0 0 51 -2,-0.5 4,-2.4 1,-0.3 -53,-0.2 0.732 105.2 62.9 -45.1 -29.9 43.3 34.1 96.9 60 63 A S H 3> S+ 0 0 66 2,-0.2 4,-4.1 1,-0.2 -1,-0.3 0.906 97.9 55.7 -67.3 -38.5 40.1 33.0 98.6 61 64 A S H <> S+ 0 0 13 -3,-1.8 4,-3.4 2,-0.2 5,-0.3 0.963 109.9 45.3 -55.9 -53.9 38.8 36.6 98.8 62 65 A A H X S+ 0 0 0 -4,-1.1 4,-2.6 1,-0.2 -1,-0.2 0.948 114.9 49.0 -54.3 -51.2 39.3 37.0 95.0 63 66 A T H X S+ 0 0 19 -4,-2.4 4,-2.4 2,-0.2 5,-0.3 0.932 113.7 45.0 -54.8 -53.5 37.6 33.6 94.4 64 67 A N H X S+ 0 0 90 -4,-4.1 4,-2.7 1,-0.2 5,-0.2 0.970 114.6 48.8 -54.1 -55.3 34.7 34.4 96.7 65 68 A A H X S+ 0 0 0 -4,-3.4 4,-2.1 -5,-0.2 -1,-0.2 0.819 110.0 55.0 -53.2 -35.2 34.4 37.9 95.1 66 69 A L H X S+ 0 0 23 -4,-2.6 4,-0.9 -5,-0.3 -1,-0.2 0.983 112.3 38.2 -65.1 -59.0 34.5 36.3 91.7 67 70 A R H < S+ 0 0 194 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.827 121.1 47.6 -62.4 -33.2 31.7 33.8 92.2 68 71 A S H < S+ 0 0 61 -4,-2.7 -2,-0.2 -5,-0.3 -1,-0.2 0.905 116.0 35.8 -78.6 -43.3 29.6 36.4 94.1 69 72 A M H >< S+ 0 0 6 -4,-2.1 3,-2.4 -5,-0.2 -1,-0.2 0.386 78.2 132.9 -95.2 4.2 29.8 39.5 92.1 70 73 A Q T 3< S+ 0 0 98 -4,-0.9 10,-0.2 1,-0.3 9,-0.1 -0.324 82.7 7.1 -58.1 129.9 29.8 38.1 88.6 71 74 A G T 3 S+ 0 0 34 8,-2.6 -1,-0.3 1,-0.2 9,-0.1 0.487 89.3 162.9 78.0 2.6 27.3 40.0 86.5 72 75 A F < - 0 0 83 -3,-2.4 7,-3.0 7,-0.3 2,-0.5 -0.338 45.3-115.8 -61.3 127.5 26.6 42.6 89.2 73 76 A P E +D 78 0B 93 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.523 45.6 170.1 -66.2 114.7 24.9 45.8 87.9 74 77 A F E > -D 77 0B 18 3,-3.7 3,-2.3 -2,-0.5 -59,-0.2 -0.998 68.2 -12.7-134.4 125.0 27.5 48.5 88.5 75 78 A Y T 3 S- 0 0 56 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.0 0.917 131.5 -54.4 47.6 46.5 27.1 52.0 87.1 76 79 A D T 3 S+ 0 0 157 1,-0.2 -1,-0.3 -3,-0.1 -62,-0.0 0.553 121.9 99.6 67.1 10.7 24.3 50.5 85.0 77 80 A K E < S-D 74 0B 66 -3,-2.3 -3,-3.7 -5,-0.1 2,-0.8 -0.957 79.4-111.0-129.0 147.8 26.5 47.8 83.5 78 81 A P E -D 73 0B 72 0, 0.0 -6,-0.2 0, 0.0 2,-0.1 -0.661 37.7-128.7 -80.3 112.2 26.9 44.1 84.4 79 82 A M - 0 0 1 -7,-3.0 -8,-2.6 -2,-0.8 2,-0.5 -0.389 18.7-152.4 -60.9 127.7 30.3 43.7 85.9 80 83 A R E -B 12 0A 107 -68,-2.2 -68,-2.5 -10,-0.2 2,-0.3 -0.927 17.4-170.5-106.5 126.8 32.3 40.9 84.2 81 84 A I E +B 11 0A 7 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.861 17.0 149.4-123.6 153.9 34.9 39.2 86.4 82 85 A Q E -B 10 0A 86 -72,-1.6 -72,-2.5 -2,-0.3 2,-0.3 -0.920 49.7 -84.5-159.8 176.9 37.8 36.7 86.0 83 86 A Y E -B 9 0A 31 -2,-0.3 -74,-0.2 -74,-0.3 -80,-0.1 -0.702 53.5-104.3 -90.4 146.2 41.2 35.9 87.6 84 87 A A - 0 0 6 -76,-2.7 -76,-0.1 -2,-0.3 -80,-0.1 -0.390 26.1-120.1 -67.1 150.2 44.0 38.0 86.2 85 88 A K S S+ 0 0 183 -82,-0.1 -81,-0.2 -2,-0.1 2,-0.2 0.909 90.2 6.3 -58.2 -43.2 46.3 36.1 83.8 86 89 A T S S- 0 0 99 -83,-0.1 2,-0.3 -80,-0.0 -78,-0.2 -0.616 93.4 -72.9-129.2-170.3 49.3 36.7 86.1 87 90 A D - 0 0 69 -2,-0.2 2,-0.2 -80,-0.1 -2,-0.0 -0.693 42.1-123.9 -91.9 139.6 50.3 38.0 89.5 88 91 A S >> - 0 0 19 -2,-0.3 4,-1.8 1,-0.1 3,-1.3 -0.520 28.3-112.4 -77.1 149.5 50.3 41.7 90.1 89 92 A D H 3> S+ 0 0 114 1,-0.3 4,-3.2 2,-0.2 5,-0.1 0.878 114.9 63.9 -48.6 -48.8 53.7 43.1 91.4 90 93 A I H 34 S+ 0 0 61 1,-0.3 -1,-0.3 2,-0.2 -3,-0.0 0.881 109.5 41.9 -44.0 -42.4 52.3 43.9 94.8 91 94 A I H X> S+ 0 0 7 -3,-1.3 4,-1.3 1,-0.2 3,-0.9 0.881 110.3 55.4 -75.0 -38.3 51.8 40.2 95.2 92 95 A A H 3< S+ 0 0 56 -4,-1.8 2,-2.3 1,-0.3 -2,-0.2 0.944 91.0 74.7 -57.2 -47.8 55.1 39.2 93.6 93 96 A K T 3< S+ 0 0 171 -4,-3.2 -1,-0.3 2,-0.2 -2,-0.1 0.215 118.0 12.9 -54.3 22.6 56.9 41.4 96.1 94 97 A M T <4 0 0 144 -2,-2.3 -2,-0.2 -3,-0.9 -1,-0.1 0.035 360.0 360.0-155.4 -82.1 56.1 38.6 98.6 95 98 A K < 0 0 97 -4,-1.3 -2,-0.2 0, 0.0 -3,-0.1 -0.642 360.0 360.0-100.5 360.0 54.9 35.2 97.2