==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 05-MAR-04 1VC7 . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5940.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 180 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 117.9 41.5 30.2 78.1 2 5 A E - 0 0 91 1,-0.0 2,-0.4 80,-0.0 80,-0.0 -0.242 360.0-125.1 -78.1 167.8 40.5 30.0 81.8 3 6 A T - 0 0 36 -2,-0.0 80,-0.1 3,-0.0 3,-0.1 -0.948 10.2-132.3-122.8 138.6 42.4 31.5 84.8 4 7 A R - 0 0 197 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.506 46.7 -76.3 -82.4 152.7 43.8 30.0 87.9 5 8 A P + 0 0 73 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.058 54.3 179.0 -47.5 139.4 43.2 31.5 91.4 6 9 A N - 0 0 7 53,-0.2 57,-0.1 -3,-0.1 56,-0.1 -0.947 46.7-118.3-147.1 163.1 44.9 34.6 92.5 7 10 A H S S+ 0 0 38 -2,-0.3 49,-2.9 55,-0.1 2,-0.5 0.731 105.0 64.4 -68.3 -22.0 45.3 37.2 95.3 8 11 A T E -A 55 0A 0 47,-0.2 76,-2.9 76,-0.1 2,-0.4 -0.895 69.6-157.4-113.2 129.7 44.1 39.6 92.7 9 12 A I E -AB 54 83A 0 45,-2.5 45,-2.1 -2,-0.5 2,-0.5 -0.799 13.1-144.6-100.4 144.2 40.8 39.7 90.9 10 13 A Y E -AB 53 82A 48 72,-3.8 72,-2.2 -2,-0.4 2,-0.4 -0.956 17.1-167.7-110.4 123.5 40.6 41.5 87.5 11 14 A I E +AB 52 81A 0 41,-3.5 41,-2.0 -2,-0.5 2,-0.3 -0.912 11.7 167.0-113.3 137.3 37.4 43.3 87.0 12 15 A N E + B 0 80A 29 68,-2.7 68,-2.0 -2,-0.4 39,-0.2 -0.832 47.3 64.3-139.0-179.1 36.3 44.7 83.6 13 16 A N S S+ 0 0 46 37,-0.4 2,-0.2 -2,-0.3 38,-0.2 0.820 71.2 157.1 70.1 32.5 33.1 46.1 81.9 14 17 A L - 0 0 3 36,-2.3 2,-0.4 -3,-0.1 -1,-0.2 -0.542 56.2 -88.1 -87.1 154.9 33.2 49.0 84.3 15 18 A N > - 0 0 44 59,-0.3 3,-1.2 -2,-0.2 35,-0.2 -0.467 36.3-155.3 -64.8 118.7 31.6 52.3 83.6 16 19 A E T 3 S+ 0 0 105 -2,-0.4 -1,-0.2 1,-0.2 34,-0.1 0.564 83.6 70.2 -74.6 -6.6 34.3 54.3 81.8 17 20 A K T 3 S+ 0 0 68 2,-0.1 2,-0.3 33,-0.0 -1,-0.2 0.649 74.9 101.8 -86.3 -11.0 32.8 57.7 82.8 18 21 A I S < S- 0 0 23 -3,-1.2 -4,-0.0 1,-0.1 2,-0.0 -0.561 76.4-117.5 -79.5 130.3 33.8 57.3 86.5 19 22 A K > - 0 0 143 -2,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.292 24.8-112.3 -64.2 146.8 36.9 59.2 87.6 20 23 A K H > S+ 0 0 111 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.865 114.0 48.9 -43.6 -53.7 39.8 57.2 89.0 21 24 A D H > S+ 0 0 98 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.929 114.0 44.4 -57.8 -48.9 39.5 58.5 92.6 22 25 A E H > S+ 0 0 83 -3,-0.2 4,-3.4 2,-0.2 5,-0.3 0.923 111.5 53.3 -63.6 -46.2 35.7 57.8 92.8 23 26 A L H X S+ 0 0 8 -4,-2.7 4,-3.1 2,-0.2 5,-0.2 0.927 109.6 47.6 -54.5 -50.5 35.9 54.4 91.2 24 27 A K H X S+ 0 0 77 -4,-2.2 4,-2.5 -5,-0.2 -1,-0.2 0.947 114.5 48.1 -56.9 -48.8 38.6 53.2 93.6 25 28 A K H X S+ 0 0 129 -4,-2.1 4,-2.2 -5,-0.2 -2,-0.2 0.961 114.2 43.9 -56.1 -58.4 36.6 54.5 96.5 26 29 A S H X S+ 0 0 29 -4,-3.4 4,-1.6 1,-0.2 5,-0.2 0.911 112.0 53.8 -55.4 -46.3 33.3 52.9 95.4 27 30 A L H >X S+ 0 0 0 -4,-3.1 4,-2.0 1,-0.3 3,-0.5 0.924 109.1 48.2 -56.2 -45.9 35.0 49.6 94.6 28 31 A H H 3X S+ 0 0 85 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.3 0.889 104.3 63.5 -60.8 -36.8 36.5 49.5 98.0 29 32 A A H 3< S+ 0 0 72 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.861 114.5 29.9 -56.4 -39.0 33.0 50.3 99.3 30 33 A I H << S+ 0 0 38 -4,-1.6 -1,-0.2 -3,-0.5 -2,-0.2 0.685 123.9 45.8 -98.0 -15.7 31.6 47.0 98.0 31 34 A F H >< S+ 0 0 0 -4,-2.0 3,-1.8 -5,-0.2 4,-0.3 0.628 85.8 82.9-101.6 -15.4 34.6 44.8 98.2 32 35 A S G >< S+ 0 0 53 -4,-2.3 3,-1.2 1,-0.3 -1,-0.1 0.735 80.0 70.1 -62.5 -21.7 36.1 45.4 101.6 33 36 A R G 3 S+ 0 0 173 1,-0.2 -1,-0.3 -5,-0.2 -2,-0.1 0.702 90.0 62.9 -69.5 -17.6 33.7 43.0 103.2 34 37 A F G < S- 0 0 14 -3,-1.8 -1,-0.2 1,-0.3 2,-0.2 0.607 121.5 -64.4 -84.0 -9.4 35.5 40.1 101.5 35 38 A G S < S- 0 0 23 -3,-1.2 -1,-0.3 -4,-0.3 0, 0.0 -0.727 75.9 -36.8 144.4 165.9 38.8 40.7 103.3 36 39 A Q - 0 0 121 -2,-0.2 21,-1.8 -3,-0.1 2,-0.4 -0.240 55.9-146.7 -54.9 136.6 41.6 43.1 103.8 37 40 A I E -C 56 0A 23 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.886 13.4-166.6-108.2 138.8 42.5 44.9 100.5 38 41 A L E - 0 0 56 17,-3.3 2,-0.3 1,-0.4 18,-0.1 0.797 67.3 -32.0 -91.6 -34.2 46.1 45.9 99.7 39 42 A D E -C 55 0A 62 16,-0.9 16,-2.5 2,-0.0 2,-0.4 -0.974 43.7-136.8-174.9 165.0 45.3 48.2 96.8 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.987 22.5-156.4-137.0 123.2 43.1 48.8 93.9 41 44 A L E +C 53 0A 78 12,-2.0 12,-1.9 -2,-0.4 2,-0.3 -0.911 17.0 170.8-108.6 130.0 44.7 49.8 90.7 42 45 A V - 0 0 14 -2,-0.5 2,-0.4 10,-0.2 10,-0.1 -0.995 10.0-176.4-138.6 141.3 42.8 51.8 88.1 43 46 A S - 0 0 51 5,-0.5 8,-0.4 8,-0.4 7,-0.1 -0.998 18.0-159.1-139.8 134.3 43.9 53.5 84.9 44 47 A R + 0 0 106 -2,-0.4 5,-0.2 5,-0.1 -1,-0.0 0.268 52.5 129.6 -93.6 9.5 41.7 55.6 82.6 45 48 A S S > S- 0 0 51 1,-0.1 4,-2.5 3,-0.1 -2,-0.1 -0.210 77.7-100.1 -66.2 157.1 44.1 55.1 79.7 46 49 A L T 4 S+ 0 0 150 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.816 124.0 37.3 -42.3 -41.3 43.0 54.0 76.2 47 50 A K T 4 S+ 0 0 165 1,-0.1 -1,-0.2 3,-0.0 -3,-0.0 0.848 123.3 38.0 -85.0 -37.3 44.1 50.4 77.0 48 51 A M T >4 S+ 0 0 52 -3,-0.1 3,-1.2 2,-0.0 -5,-0.5 0.513 82.9 117.9 -97.7 -3.0 43.2 50.1 80.7 49 52 A R T 3< S+ 0 0 103 -4,-2.5 -5,-0.1 1,-0.2 -33,-0.1 -0.240 72.7 29.3 -64.0 152.3 39.9 52.0 81.0 50 53 A G T 3 S+ 0 0 12 1,-0.3 -36,-2.3 -35,-0.2 -37,-0.4 0.513 108.9 90.1 77.3 6.8 36.8 50.1 82.1 51 54 A Q < - 0 0 32 -3,-1.2 -8,-0.4 -8,-0.4 2,-0.3 -0.779 48.4-178.9-130.0 172.6 39.0 47.7 84.2 52 55 A A E -A 11 0A 1 -41,-2.0 -41,-3.5 -2,-0.2 2,-0.6 -0.937 21.2-139.2-170.9 146.9 40.5 47.3 87.7 53 56 A F E -AC 10 41A 64 -12,-1.9 -12,-2.0 -2,-0.3 2,-0.7 -0.955 15.1-164.3-114.7 112.0 42.6 45.1 89.7 54 57 A V E -AC 9 40A 0 -45,-2.1 -45,-2.5 -2,-0.6 2,-0.8 -0.886 11.7-154.0 -98.3 118.0 41.5 44.5 93.3 55 58 A I E -AC 8 39A 0 -16,-2.5 -17,-3.3 -2,-0.7 -16,-0.9 -0.804 9.5-166.0 -98.0 106.3 44.4 43.0 95.3 56 59 A F E - C 0 37A 0 -49,-2.9 -19,-0.2 -2,-0.8 3,-0.1 -0.550 22.8-137.3 -88.0 152.5 43.3 40.9 98.3 57 60 A K S S+ 0 0 92 -21,-1.8 2,-0.4 -2,-0.2 -1,-0.1 0.885 92.4 40.4 -74.5 -36.9 45.7 39.8 101.0 58 61 A E S >> S- 0 0 115 -22,-0.4 4,-1.3 -51,-0.1 3,-0.9 -0.935 75.6-136.6-118.3 136.2 44.3 36.3 101.1 59 62 A V H 3> S+ 0 0 53 -2,-0.4 4,-2.6 1,-0.3 5,-0.2 0.786 104.2 63.5 -56.7 -31.5 43.2 34.2 98.1 60 63 A S H 3> S+ 0 0 78 1,-0.2 4,-2.8 2,-0.2 -1,-0.3 0.925 101.3 52.8 -63.0 -36.5 40.1 33.1 99.9 61 64 A S H <> S+ 0 0 11 -3,-0.9 4,-2.6 2,-0.2 5,-0.2 0.947 109.4 47.3 -60.9 -49.2 39.0 36.7 99.9 62 65 A A H X S+ 0 0 0 -4,-1.3 4,-2.7 1,-0.2 -1,-0.2 0.953 113.0 49.9 -56.1 -50.4 39.5 37.0 96.1 63 66 A T H X S+ 0 0 20 -4,-2.6 4,-2.4 2,-0.2 5,-0.2 0.892 110.4 48.3 -57.1 -46.1 37.6 33.8 95.5 64 67 A N H X S+ 0 0 81 -4,-2.8 4,-3.7 1,-0.2 5,-0.2 0.963 114.1 47.1 -59.9 -50.2 34.7 34.8 97.7 65 68 A A H X S+ 0 0 0 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.856 110.3 52.5 -59.3 -38.8 34.4 38.2 95.9 66 69 A L H X S+ 0 0 21 -4,-2.7 4,-0.6 -5,-0.2 -1,-0.2 0.952 117.0 38.2 -65.3 -45.6 34.7 36.6 92.5 67 70 A R H < S+ 0 0 200 -4,-2.4 3,-0.5 -5,-0.2 -2,-0.2 0.947 120.7 44.8 -70.0 -46.7 31.9 34.2 93.2 68 71 A S H < S+ 0 0 61 -4,-3.7 -3,-0.2 -5,-0.2 -2,-0.2 0.784 119.7 35.7 -69.7 -32.1 29.7 36.6 95.2 69 72 A M H >< S+ 0 0 6 -4,-2.2 3,-2.4 -5,-0.2 -1,-0.2 0.318 75.2 134.2-107.8 7.0 29.9 39.7 93.0 70 73 A Q T 3< S+ 0 0 93 -4,-0.6 10,-0.2 -3,-0.5 9,-0.0 -0.382 85.0 7.5 -57.6 128.2 30.0 38.2 89.5 71 74 A G T 3 S+ 0 0 37 8,-2.1 -1,-0.3 1,-0.2 9,-0.1 0.537 87.1 163.4 78.0 6.4 27.5 40.3 87.5 72 75 A F < - 0 0 85 -3,-2.4 7,-2.6 6,-0.2 2,-0.5 -0.371 43.9-117.9 -63.9 131.0 26.8 42.9 90.1 73 76 A P E +D 78 0B 93 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.617 44.1 171.6 -70.7 116.8 25.1 46.1 88.7 74 77 A F E > -D 77 0B 19 3,-2.8 3,-1.1 -2,-0.5 -59,-0.3 -0.990 67.5 -10.8-135.1 122.2 27.7 48.9 89.4 75 78 A Y T 3 S- 0 0 62 -2,-0.4 -1,-0.2 1,-0.3 -57,-0.1 0.942 133.9 -53.4 51.4 44.5 27.3 52.4 88.0 76 79 A D T 3 S+ 0 0 101 1,-0.1 -1,-0.3 -3,-0.1 0, 0.0 0.669 121.5 98.6 64.9 23.7 24.5 50.9 85.9 77 80 A K E < S-D 74 0B 64 -3,-1.1 -3,-2.8 -5,-0.1 2,-0.5 -1.000 77.0-109.8-142.7 141.3 26.7 48.1 84.4 78 81 A P E -D 73 0B 75 0, 0.0 -6,-0.2 0, 0.0 2,-0.1 -0.559 36.7-129.6 -73.2 117.6 27.2 44.3 85.2 79 82 A M - 0 0 3 -7,-2.6 -8,-2.1 -2,-0.5 2,-0.6 -0.385 15.2-153.7 -63.9 134.5 30.6 43.8 86.7 80 83 A R E -B 12 0A 117 -68,-2.0 -68,-2.7 -10,-0.2 2,-0.4 -0.972 17.7-170.8-115.7 117.4 32.6 41.0 85.0 81 84 A I E +B 11 0A 4 -2,-0.6 2,-0.3 -70,-0.2 -70,-0.2 -0.883 15.0 156.2-114.4 143.9 35.2 39.5 87.4 82 85 A Q E -B 10 0A 81 -72,-2.2 -72,-3.8 -2,-0.4 2,-0.2 -0.913 47.9 -90.4-149.2 168.6 38.0 37.0 86.8 83 86 A Y E -B 9 0A 32 -2,-0.3 -74,-0.3 -74,-0.3 2,-0.1 -0.576 53.1-102.6 -81.2 150.8 41.3 36.1 88.6 84 87 A A - 0 0 6 -76,-2.9 -76,-0.1 -2,-0.2 -1,-0.1 -0.481 23.9-123.0 -72.9 147.9 44.2 38.2 87.3 85 88 A K S S+ 0 0 193 -2,-0.1 2,-0.3 1,-0.1 -81,-0.1 0.822 90.4 15.1 -59.1 -33.9 46.6 36.3 84.9 86 89 A T S S- 0 0 105 -80,-0.0 -1,-0.1 -78,-0.0 -80,-0.0 -0.963 92.0 -83.1-143.3 160.6 49.6 37.0 87.1 87 90 A D - 0 0 78 -2,-0.3 2,-0.1 1,-0.1 -2,-0.0 -0.282 45.0-119.2 -63.3 140.6 50.5 38.1 90.7 88 91 A S >> - 0 0 20 1,-0.1 4,-1.9 -4,-0.0 3,-0.8 -0.447 27.3-110.7 -75.6 156.4 50.6 41.9 91.3 89 92 A D H 3> S+ 0 0 125 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.894 116.5 61.2 -54.9 -42.3 53.9 43.3 92.4 90 93 A I H 34 S+ 0 0 72 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.844 107.8 44.4 -53.0 -38.2 52.6 44.0 95.9 91 94 A I H X> S+ 0 0 5 -3,-0.8 4,-1.9 2,-0.2 3,-1.5 0.891 111.3 51.8 -75.8 -41.4 51.9 40.3 96.4 92 95 A A H 3< S+ 0 0 58 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.931 99.6 63.5 -61.4 -45.3 55.3 39.1 94.9 93 96 A K T 3< S+ 0 0 173 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.2 0.493 120.3 26.1 -59.3 -0.4 57.2 41.5 97.2 94 97 A M T <4 0 0 132 -3,-1.5 -2,-0.2 -5,-0.2 -3,-0.1 0.539 360.0 360.0-120.3 -80.4 55.7 39.4 100.0 95 98 A K < 0 0 97 -4,-1.9 -2,-0.1 0, 0.0 -4,-0.1 -0.497 360.0 360.0 -80.7 360.0 54.9 35.9 98.9