==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQI . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR H.ZHANG,M.M.SKINNER,W.S.SANDBERG,A.H.-J.WANG,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6512.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 51.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 212 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 136.0 -0.7 19.1 2.7 2 2 A I - 0 0 68 61,-0.1 2,-0.5 35,-0.0 61,-0.4 -0.748 360.0-141.7 -83.8 127.9 -0.5 16.4 5.3 3 3 A K - 0 0 115 -2,-0.5 33,-2.1 33,-0.4 2,-0.4 -0.831 23.0-178.8 -91.6 123.4 0.5 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.8 -2,-0.5 2,-0.4 -0.964 6.3-164.0-122.5 140.0 2.9 15.5 10.5 5 5 A E E -AB 34 60A 61 29,-3.1 29,-2.7 -2,-0.4 2,-0.6 -0.990 14.2-156.5-128.5 132.6 4.3 16.2 14.0 6 6 A I E - B 0 59A 2 53,-2.3 53,-1.9 -2,-0.4 27,-0.1 -0.960 26.4-147.7 -97.1 118.3 7.3 14.6 15.8 7 7 A K > - 0 0 78 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.426 27.4-103.8 -79.2 161.4 6.5 15.1 19.6 8 8 A P G > S+ 0 0 106 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.806 123.4 56.6 -51.6 -33.0 9.4 15.6 22.1 9 9 A S G 3 S+ 0 0 110 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.505 102.3 56.4 -75.6 -6.9 8.8 12.0 23.3 10 10 A Q G < + 0 0 14 -3,-2.0 22,-0.2 1,-0.1 -1,-0.2 0.161 68.3 114.1-111.8 16.4 9.4 10.7 19.7 11 11 A A < + 0 0 43 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.439 66.4 65.4 -74.7 3.0 12.8 12.1 19.1 12 12 A Q - 0 0 136 -3,-0.2 20,-0.5 42,-0.1 2,-0.3 -0.807 66.9-142.4-122.4 160.0 14.6 8.7 18.9 13 13 A F - 0 0 55 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.774 7.3-143.5-113.5 161.5 14.5 5.8 16.6 14 14 A T E -C 30 0A 99 16,-2.3 16,-2.8 -2,-0.3 2,-0.4 -0.875 16.6-136.0-115.7 161.0 14.8 2.0 17.3 15 15 A T E -C 29 0A 79 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.956 12.4-166.8-123.5 131.2 16.6 -0.5 15.0 16 16 A R E -C 28 0A 135 12,-2.5 12,-2.7 -2,-0.4 2,-0.3 -0.879 15.8-170.9-111.8 150.3 15.5 -3.9 13.8 17 17 A S E +C 27 0A 81 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.861 17.0 129.6-139.2 163.8 17.8 -6.3 12.1 18 18 A G E -C 26 0A 26 8,-1.5 8,-2.2 -2,-0.3 2,-0.4 -0.979 47.3 -78.0 175.9-169.6 18.1 -9.6 10.3 19 19 A V E -C 25 0A 100 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.984 37.8-126.9-125.2 129.8 19.3 -11.5 7.3 20 20 A S > - 0 0 44 4,-3.1 3,-1.8 -2,-0.4 6,-0.0 -0.026 38.2 -89.9 -63.7 169.7 17.9 -11.5 3.7 21 21 A R T 3 S+ 0 0 118 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.835 125.5 38.7 -51.9 -39.7 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 182 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.041 127.9 -84.4-109.5 31.7 20.3 -14.9 0.1 23 23 A G S < S+ 0 0 49 -3,-1.8 -2,-0.1 1,-0.2 0, 0.0 0.153 79.2 134.6 98.8 -17.0 22.6 -14.1 3.1 24 24 A K - 0 0 150 -5,-0.1 -4,-3.1 1,-0.1 -1,-0.2 -0.455 50.7-126.8 -70.4 133.3 22.9 -10.2 3.2 25 25 A P E -C 19 0A 96 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.439 29.0-172.7 -66.6 146.2 22.5 -8.4 6.6 26 26 A Y E -C 18 0A 90 -8,-2.2 -8,-1.5 -2,-0.1 2,-0.3 -0.976 12.9-163.5-137.3 157.6 20.0 -5.5 6.8 27 27 A S E -C 17 0A 78 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.991 4.4-164.6-139.8 135.7 19.1 -2.9 9.4 28 28 A L E -C 16 0A 53 -12,-2.7 -12,-2.5 -2,-0.3 2,-0.4 -0.983 7.7-152.3-122.4 125.9 15.9 -0.8 9.5 29 29 A N E -C 15 0A 40 -2,-0.4 20,-2.5 20,-0.3 2,-0.4 -0.837 16.7-167.8 -98.5 128.0 15.6 2.4 11.7 30 30 A E E -CD 14 48A 48 -16,-2.8 -16,-2.3 -2,-0.4 2,-0.3 -0.948 8.5-178.5-121.8 137.2 12.0 3.2 12.8 31 31 A Q E - D 0 47A 3 16,-2.7 16,-3.2 -2,-0.4 2,-0.3 -0.972 20.2-130.0-129.9 150.9 10.5 6.3 14.4 32 32 A L E + D 0 46A 77 -20,-0.5 2,-0.3 -2,-0.3 14,-0.2 -0.661 30.0 164.9-100.2 154.5 7.0 7.2 15.5 33 33 A C E - D 0 45A 0 12,-2.0 12,-2.4 -2,-0.3 2,-0.5 -0.933 34.3-110.6-153.6 171.0 5.0 10.3 14.7 34 34 A Y E -AD 5 44A 83 -29,-2.7 -29,-3.1 -2,-0.3 2,-0.4 -0.973 26.8-167.1-112.3 131.6 1.5 11.8 14.7 35 35 A V E -AD 4 43A 10 8,-2.3 8,-2.7 -2,-0.5 2,-0.8 -0.970 19.2-132.7-121.1 132.4 -0.3 12.5 11.5 36 36 A D + 0 0 68 -33,-2.1 -33,-0.4 -2,-0.4 -2,-0.0 -0.738 28.8 169.9 -89.0 110.9 -3.4 14.5 11.3 37 37 A L - 0 0 108 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.096 62.0 -97.7-105.6 19.9 -6.0 12.7 9.3 38 38 A G S S+ 0 0 66 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.653 85.5 124.2 76.8 15.7 -8.8 15.1 10.2 39 39 A N S S- 0 0 106 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.237 85.2 -81.1 -89.5-170.4 -10.3 13.0 13.0 40 40 A E S S+ 0 0 188 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 0.858 115.7 16.1 -65.7 -30.3 -10.8 14.5 16.5 41 41 A Y S S- 0 0 191 -4,-0.0 -2,-0.3 0, 0.0 -4,-0.3 -0.961 92.2 -95.6-134.4 153.2 -7.1 13.8 17.3 42 42 A P - 0 0 57 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.261 43.9-125.1 -54.7 150.7 -4.0 13.0 15.2 43 43 A V E -D 35 0A 50 -8,-2.7 -8,-2.3 -4,-0.0 2,-0.3 -0.792 17.2-106.6-107.6 152.2 -3.1 9.3 14.9 44 44 A L E -D 34 0A 99 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.590 40.3-179.6 -77.7 129.5 0.1 7.4 15.7 45 45 A V E -D 33 0A 44 -12,-2.4 -12,-2.0 -2,-0.3 2,-0.4 -0.982 23.5-132.4-132.2 136.3 2.1 6.3 12.6 46 46 A K E -D 32 0A 164 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.814 20.4-163.0 -89.6 135.9 5.4 4.3 12.2 47 47 A V E -D 31 0A 4 -16,-3.2 -16,-2.7 -2,-0.4 2,-0.6 -0.929 8.9-150.1-115.0 132.4 8.0 5.8 9.8 48 48 A T E -D 30 0A 34 -2,-0.4 -18,-0.2 -18,-0.2 33,-0.0 -0.944 23.5-136.6-101.0 123.5 11.0 3.7 8.5 49 49 A L - 0 0 8 -20,-2.5 -20,-0.3 -2,-0.6 2,-0.2 -0.255 16.5-109.5 -76.7 158.9 14.0 6.0 7.8 50 50 A D > - 0 0 48 1,-0.1 3,-1.8 4,-0.1 -1,-0.1 -0.595 52.1 -73.1 -85.1 159.1 16.2 5.8 4.7 51 51 A E T 3 S+ 0 0 198 1,-0.2 -1,-0.1 -2,-0.2 -23,-0.0 -0.146 117.3 10.0 -52.4 135.6 19.8 4.6 4.9 52 52 A G T 3 S+ 0 0 80 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.500 95.9 128.5 74.2 5.4 22.2 7.1 6.6 53 53 A Q < - 0 0 58 -3,-1.8 -1,-0.2 -24,-0.0 3,-0.1 -0.786 51.9-135.3 -98.8 131.1 19.5 9.4 7.8 54 54 A P - 0 0 96 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.224 40.3 -77.4 -65.2 166.3 19.2 10.6 11.5 55 55 A A - 0 0 24 -44,-0.1 2,-0.2 1,-0.1 -44,-0.1 -0.411 54.0-104.5 -64.3 141.2 16.0 10.7 13.4 56 56 A Y - 0 0 21 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.552 38.8-120.5 -62.5 136.0 13.8 13.7 12.6 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.335 41.6 -78.0 -71.0 155.9 14.0 16.3 15.3 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.293 88.5 78.9 -52.7 140.7 10.7 17.4 17.2 59 59 A G E S-B 6 0A 29 -53,-1.9 -53,-2.3 -3,-0.1 2,-0.4 -0.918 80.6 -48.2 148.7-175.8 8.6 19.8 15.2 60 60 A L E +B 5 0A 84 -2,-0.3 26,-2.0 -55,-0.2 2,-0.3 -0.764 52.5 169.3 -97.7 140.2 6.1 20.2 12.3 61 61 A Y E -BE 4 85A 25 -57,-2.8 -57,-2.5 -2,-0.4 2,-0.2 -0.898 21.2-148.7-141.1 162.5 6.7 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.6 22,-2.2 -2,-0.3 2,-0.4 -0.775 37.2 -88.7-128.0 175.2 4.9 17.8 5.7 63 63 A V E - E 0 83A 23 -61,-0.4 20,-0.2 -2,-0.2 2,-0.2 -0.771 34.9-132.6 -93.0 129.9 5.3 14.8 3.2 64 64 A H > - 0 0 91 18,-3.0 3,-2.0 -2,-0.4 18,-0.4 -0.497 19.9-119.9 -78.6 147.9 7.8 14.9 0.4 65 65 A L G > S+ 0 0 139 1,-0.3 3,-1.8 -2,-0.2 -1,-0.1 0.780 108.4 72.2 -54.0 -32.5 6.8 13.9 -3.2 66 66 A S G 3 S+ 0 0 54 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.554 77.7 80.3 -63.7 -7.1 9.4 11.1 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.0 12,-3.6 15,-0.2 13,-0.7 0.721 86.3 73.7 -67.7 -19.0 7.2 9.2 -0.7 68 68 A F E < +F 78 0B 73 -3,-1.8 2,-0.3 10,-0.2 10,-0.2 -0.612 51.1 163.3-109.7 151.6 5.0 8.0 -3.6 69 69 A K E -F 77 0B 105 8,-2.1 8,-2.7 -2,-0.2 2,-0.5 -0.978 42.8-100.9-149.9 159.4 5.4 5.5 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.803 45.5-140.3 -85.8 128.6 3.1 3.7 -8.9 71 71 A G > - 0 0 14 4,-2.7 3,-1.8 -2,-0.5 -1,-0.1 -0.138 28.5 -88.8 -78.2 177.9 2.5 0.1 -7.6 72 72 A Q T 3 S+ 0 0 176 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.620 125.4 52.5 -69.7 -11.3 2.3 -3.1 -9.5 73 73 A F T 3 S- 0 0 177 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.321 119.8-104.8-103.2 10.1 -1.5 -2.8 -10.1 74 74 A G S < S+ 0 0 60 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.451 84.2 116.4 86.9 2.7 -1.1 0.8 -11.6 75 75 A S S S- 0 0 72 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.614 73.3 -94.7-101.5 158.2 -2.5 2.7 -8.6 76 76 A L E +F 70 0B 123 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.532 47.0 178.3 -73.2 142.6 -0.5 5.2 -6.4 77 77 A M E -F 69 0B 84 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.925 33.6-109.9-136.5 160.5 1.1 3.8 -3.3 78 78 A I E -F 68 0B 94 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.829 26.7-175.7 -88.3 129.3 3.2 5.1 -0.5 79 79 A D S S- 0 0 76 -12,-3.6 2,-0.3 -2,-0.5 -1,-0.2 0.928 72.6 -24.4 -83.0 -67.4 6.7 3.7 -0.7 80 80 A R S S- 0 0 79 -13,-0.7 2,-0.6 -14,-0.2 -1,-0.4 -0.970 70.9-110.2-142.3 137.3 8.2 5.2 2.5 81 81 A L - 0 0 28 -2,-0.3 2,-0.5 -3,-0.1 -33,-0.1 -0.612 39.6-171.1 -72.4 110.4 6.8 8.3 4.2 82 82 A R - 0 0 44 -2,-0.6 -18,-3.0 -18,-0.4 2,-0.3 -0.931 8.3-151.5-108.4 127.6 9.7 10.9 3.7 83 83 A L E -E 63 0A 12 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.740 16.0-173.4-109.2 150.5 9.3 14.1 5.6 84 84 A V E -E 62 0A 49 -22,-2.2 -22,-2.6 -2,-0.3 -2,-0.0 -0.992 40.6 -87.5-135.6 147.7 10.5 17.7 5.1 85 85 A P E E 61 0A 106 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.163 360.0 360.0 -60.5 140.6 10.2 20.7 7.5 86 86 A A 0 0 97 -26,-2.0 -26,-0.1 -82,-0.1 -83,-0.0 -0.261 360.0 360.0 -77.2 360.0 7.0 22.7 7.3