==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 07-JAN-05 1VQX . COMPND 2 MOLECULE: RHODOPSIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR O.G.KISSELEV,M.A.DOWNS,J.H.MCDOWELL,P.A.HARGRAVE . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1586.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 42.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 21.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 145 0, 0.0 6,-0.1 0, 0.0 7,-0.1 0.000 360.0 360.0 360.0 -43.4 0.8 6.0 2.1 2 2 A D + 0 0 67 5,-0.1 2,-1.0 1,-0.1 5,-0.1 0.886 360.0 72.3 -64.3 -37.8 3.8 3.5 1.8 3 3 A E S > S- 0 0 38 3,-0.4 3,-2.0 1,-0.2 -1,-0.1 -0.688 78.5-148.5 -89.1 101.2 2.5 2.2 -1.6 4 4 A A T 3 S+ 0 0 106 -2,-1.0 -1,-0.2 1,-0.3 3,-0.1 0.742 93.4 48.9 -34.3 -50.8 3.2 5.0 -4.2 5 5 A X T 3 S+ 0 0 92 1,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.746 120.6 27.8 -65.8 -32.6 0.2 4.2 -6.4 6 6 A X < + 0 0 46 -3,-2.0 -3,-0.4 1,-0.1 -1,-0.2 -0.985 43.2 163.3-143.1 128.4 -2.4 4.0 -3.6 7 7 A X S S+ 0 0 71 -2,-0.4 -5,-0.1 -6,-0.1 -1,-0.1 0.788 85.1 50.9-101.0 -36.9 -2.7 5.6 -0.2 8 8 A V S S+ 0 0 138 1,-0.2 2,-1.3 -7,-0.1 -2,-0.1 0.952 101.8 61.2 -66.4 -63.6 -6.5 5.0 0.5 9 9 A X S S+ 0 0 57 1,-0.0 2,-0.8 5,-0.0 -1,-0.2 -0.537 70.8 171.7 -69.3 91.1 -6.4 1.2 -0.3 10 10 A K + 0 0 72 -2,-1.3 2,-0.2 4,-0.1 -3,-0.1 -0.853 11.7 147.4-117.2 93.3 -4.0 0.1 2.4 11 11 A X > - 0 0 79 -2,-0.8 4,-2.0 1,-0.1 5,-0.1 -0.606 63.7 -96.9-114.5 172.5 -3.8 -3.7 2.6 12 12 A E H > S+ 0 0 146 2,-0.2 4,-2.0 -2,-0.2 3,-0.1 0.960 128.7 48.8 -56.8 -45.3 -1.1 -6.3 3.4 13 13 A X H > S+ 0 0 109 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.876 105.8 58.0 -61.7 -37.4 -0.4 -6.7 -0.3 14 14 A X H 4 S+ 0 0 8 1,-0.2 3,-0.2 2,-0.2 -1,-0.2 0.938 108.0 46.7 -57.8 -40.1 -0.3 -2.8 -0.6 15 15 A Q H X S+ 0 0 70 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.856 107.2 57.7 -66.4 -42.1 2.5 -3.0 2.0 16 16 A V H < S+ 0 0 84 -4,-2.0 -1,-0.2 3,-0.3 -2,-0.2 0.870 91.0 71.0 -57.6 -37.7 4.3 -5.8 0.1 17 17 A A T < S+ 0 0 71 -4,-1.8 -1,-0.2 -3,-0.2 -2,-0.2 0.700 110.5 31.8 -59.1 -34.5 4.5 -3.6 -3.1 18 18 A P T 4 0 0 73 0, 0.0 -2,-0.2 0, 0.0 -1,-0.2 0.867 360.0 360.0 -69.9 -67.8 7.2 -1.4 -1.4 19 19 A A < 0 0 114 -4,-2.1 -3,-0.3 0, 0.0 -2,-0.1 0.591 360.0 360.0-134.2 360.0 8.6 -4.4 0.7