==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 06-JAN-95 1VTN . COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*CP*TP*AP*AP*GP*TP*CP*AP*AP*CP*C) . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.L.CLARK,E.D.HALAY,E.LAI,S.K.BURLEY . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6687.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 54.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 28.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 117 C H 0 0 180 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 176.8 -3.7 37.5 21.6 2 118 C A - 0 0 86 1,-0.1 37,-0.2 0, 0.0 0, 0.0 -0.633 360.0 -82.5 -91.2 156.2 -0.6 37.1 23.9 3 119 C K - 0 0 115 -2,-0.2 -1,-0.1 1,-0.1 34,-0.0 -0.380 49.8-107.0 -61.6 124.3 2.4 35.1 22.7 4 120 C P - 0 0 13 0, 0.0 2,-1.5 0, 0.0 -1,-0.1 -0.132 31.0-111.6 -43.9 143.3 2.1 31.3 23.1 5 121 C P S S+ 0 0 87 0, 0.0 2,-0.3 0, 0.0 87,-0.2 -0.175 86.8 90.5 -76.2 42.5 4.2 29.8 25.9 6 122 C Y S S- 0 0 63 -2,-1.5 87,-0.2 87,-0.1 2,-0.1 -0.982 71.1-125.5-139.5 145.5 6.7 27.9 23.6 7 123 C S > - 0 0 29 85,-2.9 4,-3.1 -2,-0.3 3,-0.1 -0.442 36.3-105.7 -80.1 169.3 10.0 28.8 21.9 8 124 C Y H > S+ 0 0 48 1,-0.2 4,-3.5 2,-0.2 5,-0.3 0.906 124.6 57.4 -61.5 -37.2 10.3 28.5 18.1 9 125 C I H > S+ 0 0 16 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.892 110.6 42.6 -56.0 -46.3 12.4 25.4 18.8 10 126 C S H > S+ 0 0 0 82,-0.4 4,-2.5 2,-0.2 3,-0.4 0.988 114.8 51.1 -65.8 -50.8 9.5 23.9 20.7 11 127 C L H X S+ 0 0 0 -4,-3.1 4,-2.2 1,-0.3 -2,-0.2 0.904 111.0 46.2 -50.5 -58.8 7.0 25.1 18.0 12 128 C I H X S+ 0 0 0 -4,-3.5 4,-2.4 1,-0.2 -1,-0.3 0.845 111.9 53.9 -53.3 -35.5 9.0 23.6 15.1 13 129 C T H X S+ 0 0 2 -4,-1.5 4,-2.7 -3,-0.4 -1,-0.2 0.905 108.3 46.8 -72.4 -39.4 9.4 20.3 17.1 14 130 C M H X S+ 0 0 38 -4,-2.5 4,-2.0 -3,-0.2 -2,-0.2 0.918 112.9 52.3 -65.9 -33.6 5.6 20.0 17.7 15 131 C A H < S+ 0 0 0 -4,-2.2 4,-0.3 -5,-0.3 -2,-0.2 0.882 113.8 41.0 -71.4 -46.5 5.1 20.7 14.1 16 132 C I H >< S+ 0 0 2 -4,-2.4 3,-1.7 -5,-0.2 6,-0.3 0.958 113.3 53.8 -62.5 -51.5 7.5 18.1 12.8 17 133 C Q H 3< S+ 0 0 80 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.820 108.4 47.7 -56.8 -42.3 6.4 15.5 15.4 18 134 C Q T 3< S+ 0 0 97 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.564 87.7 112.2 -72.6 -14.9 2.7 15.6 14.5 19 135 C A S X S- 0 0 1 -3,-1.7 3,-1.4 -4,-0.3 5,-0.1 -0.483 75.6-131.0 -59.6 130.3 3.6 15.4 10.8 20 136 C P T 3 S+ 0 0 128 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.843 113.5 35.1 -51.6 -29.4 2.5 12.1 9.4 21 137 C G T 3 S- 0 0 56 2,-0.3 3,-0.1 -5,-0.0 -4,-0.1 0.515 111.2-121.6 -99.8 -3.6 5.9 11.7 8.0 22 138 C K S < S+ 0 0 113 -3,-1.4 57,-0.4 -6,-0.3 2,-0.2 0.920 85.5 83.4 56.9 41.6 7.7 13.4 10.9 23 139 C M - 0 0 58 -7,-0.3 -2,-0.3 -8,-0.2 2,-0.3 -0.850 55.7-171.1-164.8 142.0 9.2 16.0 8.6 24 140 C L B -A 77 0A 10 53,-2.6 53,-2.2 -2,-0.2 2,-0.2 -0.929 22.8-119.2-131.4 159.7 7.9 19.3 7.1 25 141 C T > - 0 0 11 -2,-0.3 4,-1.9 51,-0.2 51,-0.2 -0.526 43.0-101.0 -82.6 164.2 8.8 22.0 4.6 26 142 C L H >> S+ 0 0 42 49,-0.4 4,-2.3 1,-0.2 3,-1.4 0.969 124.3 49.7 -46.4 -58.3 9.3 25.6 5.7 27 143 C S H 3> S+ 0 0 82 1,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.823 109.2 50.9 -56.1 -35.9 5.9 26.6 4.5 28 144 C E H 3> S+ 0 0 77 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.768 107.5 53.6 -73.9 -29.1 4.3 23.6 6.2 29 145 C I H < - 0 0 31 -4,-2.9 3,-3.0 -5,-0.3 4,-0.3 -0.791 58.0-172.4-110.9 90.2 -1.6 29.9 17.2 38 154 C P G > S+ 0 0 41 0, 0.0 3,-2.1 0, 0.0 4,-0.3 0.788 82.3 73.2 -50.0 -32.1 -3.7 32.9 16.0 39 155 C Y G > S+ 0 0 64 1,-0.3 3,-1.1 -37,-0.2 -5,-0.1 0.806 92.8 54.1 -45.5 -40.9 -1.1 35.1 17.6 40 156 C Y G < S+ 0 0 3 -3,-3.0 -1,-0.3 -7,-0.3 -6,-0.2 0.463 80.4 89.4 -85.9 2.0 1.2 34.1 14.7 41 157 C R G < S+ 0 0 114 -3,-2.1 -1,-0.2 -4,-0.3 3,-0.2 0.724 92.6 52.7 -61.2 -18.3 -1.4 35.2 12.2 42 158 C E S < S+ 0 0 115 -3,-1.1 0, 0.0 -4,-0.3 0, 0.0 -0.628 97.7 29.2-112.1 173.9 0.4 38.6 12.6 43 159 C N >> + 0 0 80 -2,-0.2 3,-1.9 1,-0.1 4,-1.3 0.678 69.6 163.3 53.9 31.5 4.0 39.9 12.3 44 160 C Q H 3> + 0 0 65 1,-0.3 4,-2.6 -3,-0.2 5,-0.4 0.775 61.6 54.6 -57.2 -45.0 4.9 37.2 9.8 45 161 C Q H 3> S+ 0 0 133 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.733 110.3 50.8 -68.0 -13.0 8.1 38.5 8.2 46 162 C R H <> S+ 0 0 166 -3,-1.9 4,-1.2 2,-0.1 -2,-0.2 0.957 118.2 31.6 -84.9 -55.4 9.7 38.8 11.6 47 163 C W H X S+ 0 0 6 -4,-1.3 4,-2.2 2,-0.2 -2,-0.2 0.823 114.0 60.5 -77.1 -28.4 9.0 35.4 13.1 48 164 C Q H X S+ 0 0 22 -4,-2.6 4,-2.2 -5,-0.3 -1,-0.2 0.914 106.3 47.6 -67.5 -35.9 9.2 33.5 9.8 49 165 C N H X S+ 0 0 92 -4,-0.6 4,-2.3 -5,-0.4 -1,-0.2 0.881 110.9 53.2 -67.4 -32.8 12.8 34.7 9.4 50 166 C S H X S+ 0 0 42 -4,-1.2 4,-2.1 2,-0.2 -2,-0.2 0.834 105.8 52.5 -75.5 -29.1 13.4 33.6 13.0 51 167 C I H X S+ 0 0 0 -4,-2.2 4,-2.8 2,-0.2 5,-0.2 0.979 109.3 50.0 -65.9 -46.8 12.0 30.2 12.2 52 168 C R H X S+ 0 0 79 -4,-2.2 4,-2.2 1,-0.2 5,-0.2 0.896 110.3 49.2 -55.0 -47.7 14.4 29.9 9.2 53 169 C H H X S+ 0 0 122 -4,-2.3 4,-3.6 2,-0.2 5,-0.4 0.952 111.0 51.1 -57.1 -47.0 17.4 31.0 11.5 54 170 C S H X S+ 0 0 10 -4,-2.1 4,-2.9 1,-0.2 -2,-0.2 0.957 109.5 49.7 -55.8 -53.3 16.3 28.3 14.1 55 171 C L H < S+ 0 0 2 -4,-2.8 -1,-0.2 1,-0.2 6,-0.2 0.862 118.9 37.6 -55.9 -43.0 16.1 25.6 11.4 56 172 C S H < S+ 0 0 93 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.910 120.5 44.3 -75.0 -44.5 19.6 26.4 10.1 57 173 C F H < S+ 0 0 89 -4,-3.6 2,-0.4 -5,-0.2 -2,-0.2 0.856 98.9 77.4 -70.6 -43.7 21.3 27.3 13.3 58 174 C N >< - 0 0 11 -4,-2.9 3,-1.2 -5,-0.4 42,-0.1 -0.631 65.3-151.5 -80.9 128.2 20.1 24.4 15.5 59 175 C D T 3 S+ 0 0 42 40,-0.7 -1,-0.1 -2,-0.4 41,-0.1 0.464 89.5 74.1 -71.0 -6.5 21.6 21.0 15.1 60 176 C C T 3 S+ 0 0 0 39,-0.2 20,-2.4 1,-0.1 2,-0.5 0.643 90.8 59.6 -85.7 -16.0 18.4 19.3 16.1 61 177 C F E < +B 79 0A 6 -3,-1.2 2,-0.4 18,-0.3 18,-0.2 -0.972 68.2 178.9-111.6 120.1 16.7 20.1 12.8 62 178 C V E -B 78 0A 56 16,-2.3 16,-2.7 -2,-0.5 2,-0.2 -0.916 26.5-118.6-115.6 145.6 18.4 18.6 9.8 63 179 C K E -B 77 0A 141 -2,-0.4 2,-0.5 14,-0.2 14,-0.3 -0.595 17.2-158.5 -87.0 149.8 17.1 19.0 6.2 64 180 C V E -B 76 0A 54 12,-2.7 12,-2.1 -2,-0.2 -2,-0.0 -0.978 20.3-130.3-130.6 107.5 16.0 16.1 4.1 65 181 C A - 0 0 81 -2,-0.5 2,-0.2 10,-0.2 10,-0.1 -0.237 18.9-121.2 -58.4 150.0 16.0 16.7 0.3 66 182 C R - 0 0 47 1,-0.2 -1,-0.1 8,-0.1 4,-0.0 -0.503 26.4-168.1 -78.0 162.1 12.9 15.8 -1.8 67 183 C S + 0 0 102 -2,-0.2 2,-2.2 1,-0.0 -1,-0.2 0.641 67.6 35.2-113.7 -77.2 13.4 13.4 -4.6 68 184 C P S S- 0 0 94 0, 0.0 2,-2.6 0, 0.0 -1,-0.0 -0.149 108.0 -99.6 -86.5 45.8 10.8 12.7 -7.3 69 185 C D - 0 0 132 -2,-2.2 3,-0.3 2,-0.0 -3,-0.1 -0.274 55.5-179.2 68.6 -48.0 9.6 16.3 -7.4 70 186 C K S S- 0 0 102 -2,-2.6 3,-0.0 1,-0.3 -4,-0.0 -0.478 78.6 -30.3 60.0-123.9 6.5 15.4 -5.2 71 187 C P S S- 0 0 113 0, 0.0 -1,-0.3 0, 0.0 2,-0.0 0.797 103.4-147.0 -72.5 -43.8 4.9 18.8 -5.0 72 188 C G + 0 0 20 -3,-0.3 -2,-0.1 2,-0.1 3,-0.0 -0.019 53.0 83.2 96.1 156.8 8.4 20.4 -5.3 73 189 C K S S+ 0 0 189 -2,-0.0 -1,-0.1 -7,-0.0 -48,-0.0 0.805 78.7 37.0 76.1 113.1 10.0 23.6 -4.0 74 190 C G S S- 0 0 46 -49,-0.1 -2,-0.1 -48,-0.1 -8,-0.1 0.360 78.7-106.0 90.8 128.5 11.6 23.6 -0.5 75 191 C S - 0 0 39 -10,-0.1 -49,-0.4 1,-0.1 2,-0.3 -0.120 36.6-105.1 -67.2 177.9 13.4 20.8 1.3 76 192 C Y E - B 0 64A 35 -12,-2.1 -12,-2.7 -51,-0.2 2,-0.4 -0.747 27.1-147.5-105.6 153.7 12.0 18.9 4.2 77 193 C W E +AB 24 63A 35 -53,-2.2 -53,-2.6 -2,-0.3 2,-0.3 -0.998 22.8 166.3-124.9 132.6 13.0 19.4 7.8 78 194 C A E - B 0 62A 13 -16,-2.7 -16,-2.3 -2,-0.4 2,-0.5 -0.845 37.0 -92.2-136.9 172.8 13.1 16.7 10.4 79 195 C L E - B 0 61A 38 -57,-0.4 -18,-0.3 -2,-0.3 4,-0.1 -0.800 37.2-113.0 -93.0 129.4 14.5 16.2 13.9 80 196 C H > - 0 0 49 -20,-2.4 3,-1.3 -2,-0.5 4,-0.1 -0.290 26.4-134.1 -52.8 127.0 17.9 14.7 14.5 81 197 C P G > S+ 0 0 122 0, 0.0 3,-0.9 0, 0.0 -1,-0.2 0.823 103.4 61.1 -63.3 -28.9 17.2 11.3 16.2 82 198 C S G 3 S+ 0 0 79 1,-0.2 -2,-0.1 17,-0.0 -22,-0.0 0.004 75.7 96.8 -80.4 26.2 19.8 12.0 18.8 83 199 C S G < S- 0 0 16 -3,-1.3 -1,-0.2 1,-0.2 16,-0.1 0.626 73.4-157.4 -84.2 -21.6 17.9 15.1 20.0 84 200 C G < - 0 0 57 -3,-0.9 2,-0.8 1,-0.2 -1,-0.2 -0.332 49.5 -48.6 75.2-162.8 16.3 13.2 22.8 85 201 C N S > S+ 0 0 103 1,-0.2 3,-0.6 3,-0.1 -1,-0.2 -0.825 82.8 159.4-101.5 82.6 13.1 14.5 24.3 86 202 C M T 3 + 0 0 34 -2,-0.8 2,-0.8 1,-0.2 10,-0.3 0.971 65.4 36.3 -81.3 -61.5 14.5 17.9 24.6 87 203 C F T 3 S+ 0 0 17 -3,-0.2 4,-0.3 -78,-0.1 2,-0.3 -0.188 104.9 123.6 -81.6 41.5 11.8 20.5 24.9 88 204 C E < + 0 0 71 -2,-0.8 -3,-0.1 -3,-0.6 -78,-0.0 -0.776 48.2 25.1-117.0 152.0 10.0 17.8 26.9 89 205 C N S S- 0 0 136 -2,-0.3 -1,-0.2 1,-0.1 3,-0.0 0.955 130.5 -34.6 61.8 52.4 8.5 17.4 30.3 90 206 C G S S+ 0 0 62 -3,-0.3 -2,-0.1 1,-0.1 2,-0.1 0.981 106.8 100.1 76.3 57.1 7.7 21.0 31.0 91 207 C C + 0 0 27 -4,-0.3 -1,-0.1 2,-0.0 5,-0.1 -0.521 23.5 146.0-163.1 95.5 10.2 23.3 29.5 92 208 C Y S S+ 0 0 85 -87,-0.2 -85,-2.9 -2,-0.1 -82,-0.4 0.527 70.5 54.0-108.2 -4.1 9.2 24.9 26.2 93 209 C L S S+ 0 0 125 1,-0.3 2,-0.3 -87,-0.2 -85,-0.1 0.736 116.4 16.4 -98.9 -40.6 10.9 28.3 26.6 94 210 C R S S- 0 0 213 -87,-0.1 2,-0.4 3,-0.0 -1,-0.3 -0.974 70.8-138.6-142.8 122.6 14.6 27.5 27.4 95 211 C R - 0 0 38 -2,-0.3 2,-1.9 -3,-0.1 3,-0.2 -0.736 22.5-123.4 -81.2 139.2 16.3 24.2 26.8 96 212 C Q S S- 0 0 167 -2,-0.4 -1,-0.1 -10,-0.3 -2,-0.0 -0.542 96.5 -8.7 -80.0 78.3 18.7 23.1 29.6 97 213 C K S S- 0 0 187 -2,-1.9 2,-0.3 2,-0.0 -1,-0.3 0.599 84.3-116.1 88.6 109.5 21.5 22.8 27.0 98 214 C R - 0 0 155 -3,-0.2 2,-0.5 1,-0.1 -4,-0.0 -0.565 36.7-103.1 -70.4 126.5 20.9 23.2 23.3 99 215 C F + 0 0 38 -2,-0.3 -40,-0.7 -16,-0.1 2,-0.3 -0.431 46.6 177.5 -45.3 98.7 21.7 20.1 21.3 100 216 C K - 0 0 88 -2,-0.5 -42,-0.1 1,-0.2 0, 0.0 -0.869 29.6-115.6-106.5 155.0 25.0 20.8 19.7 101 217 C L 0 0 93 -2,-0.3 -1,-0.2 1,-0.2 -41,-0.0 0.953 360.0 360.0 -66.7 -90.6 26.4 18.0 17.6 102 218 C A 0 0 154 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.525 360.0 360.0 -34.6 360.0 29.6 16.0 18.3