==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 03-JUL-08 2VXF . COMPND 2 MOLECULE: LSM14A PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; . AUTHOR F.TRITSCHLER,M.COLES,V.TRUFFAULT . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7506.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 52.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 35.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -2 A L 0 0 225 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.0 49.0 18.5 17.3 2 -1 A E - 0 0 162 0, 0.0 5,-0.0 0, 0.0 0, 0.0 -0.981 360.0-101.1-145.8 155.2 50.5 16.1 14.7 3 0 A D > - 0 0 91 -2,-0.3 4,-1.7 1,-0.1 0, 0.0 -0.442 30.7-123.2 -74.9 150.1 49.4 12.9 12.9 4 1 A P H > S+ 0 0 86 0, 0.0 4,-0.9 0, 0.0 -1,-0.1 0.879 112.7 49.6 -62.3 -39.0 50.8 9.5 14.2 5 2 A S H 4 S+ 0 0 53 1,-0.2 3,-0.4 2,-0.2 80,-0.1 0.873 109.4 52.0 -67.5 -37.6 52.4 8.7 10.9 6 3 A G H 4 S+ 0 0 42 1,-0.2 -1,-0.2 3,-0.1 4,-0.1 0.821 99.6 64.5 -67.4 -31.8 54.0 12.1 10.7 7 4 A G H < S+ 0 0 34 -4,-1.7 -1,-0.2 1,-0.1 -2,-0.2 0.851 97.9 61.2 -61.3 -35.7 55.5 11.6 14.2 8 5 A T S < S- 0 0 40 -4,-0.9 2,-0.2 -3,-0.4 -1,-0.1 -0.836 88.8-130.9 -96.4 122.9 57.6 8.7 12.9 9 6 A P - 0 0 89 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.521 3.4-150.5 -74.2 134.9 60.1 9.6 10.1 10 7 A Y S > S+ 0 0 126 -2,-0.2 3,-1.7 2,-0.1 19,-0.3 0.880 76.5 88.8 -69.0 -37.0 60.2 7.3 7.0 11 8 A I T 3 S+ 0 0 90 1,-0.3 19,-0.2 17,-0.1 3,-0.1 -0.399 89.2 29.0 -66.5 133.1 63.9 8.0 6.5 12 9 A G T 3 S+ 0 0 61 17,-1.9 2,-0.3 1,-0.4 -1,-0.3 0.377 98.5 112.3 96.1 -2.1 66.0 5.5 8.4 13 10 A S S < S- 0 0 19 -3,-1.7 16,-2.2 16,-0.2 -1,-0.4 -0.700 72.9-107.4-103.0 156.7 63.4 2.7 8.2 14 11 A K E -A 28 0A 108 -2,-0.3 67,-2.0 14,-0.2 68,-0.8 -0.673 41.6-179.8 -82.8 133.2 63.6 -0.6 6.3 15 12 A I E -AB 27 80A 11 12,-2.2 12,-1.9 -2,-0.4 2,-0.4 -0.973 21.0-147.2-135.9 147.2 61.3 -0.7 3.2 16 13 A S E -AB 26 79A 6 63,-2.4 63,-2.1 -2,-0.3 2,-0.4 -0.959 17.6-167.7-114.7 132.6 60.6 -3.3 0.5 17 14 A L E -AB 25 78A 7 8,-2.6 8,-2.4 -2,-0.4 2,-0.5 -0.955 11.5-153.5-124.5 137.4 59.7 -2.2 -3.0 18 15 A I E -AB 24 77A 61 59,-2.3 58,-2.7 -2,-0.4 59,-1.6 -0.948 19.1-153.7-112.0 122.0 58.3 -4.2 -6.0 19 16 A S E > - B 0 75A 12 4,-1.9 3,-1.9 -2,-0.5 4,-0.2 -0.385 32.4 -99.8 -93.2 169.9 59.2 -2.9 -9.4 20 17 A K T 3 S+ 0 0 155 54,-1.3 55,-0.1 1,-0.3 -1,-0.1 0.718 118.4 67.2 -59.9 -21.0 57.3 -3.2 -12.8 21 18 A A T 3 S- 0 0 48 2,-0.1 -1,-0.3 53,-0.1 3,-0.1 0.254 114.8-112.7 -87.1 13.7 59.7 -6.0 -13.7 22 19 A E S < S+ 0 0 83 -3,-1.9 2,-0.4 1,-0.2 -2,-0.1 0.765 75.4 135.3 61.9 25.2 58.3 -8.3 -11.0 23 20 A I - 0 0 17 -4,-0.2 -4,-1.9 28,-0.1 2,-0.6 -0.855 50.7-136.9-105.0 142.9 61.6 -8.1 -9.1 24 21 A R E -A 18 0A 134 24,-0.7 23,-2.0 -2,-0.4 24,-0.5 -0.879 21.1-175.1-104.4 121.1 61.7 -7.5 -5.3 25 22 A Y E -AC 17 46A 49 -8,-2.4 -8,-2.6 -2,-0.6 2,-0.4 -0.918 5.8-163.4-113.6 139.8 64.3 -5.1 -4.0 26 23 A E E +AC 16 45A 53 19,-2.1 19,-2.1 -2,-0.4 2,-0.3 -0.972 26.4 130.6-121.6 140.7 65.0 -4.3 -0.3 27 24 A G E -A 15 0A 3 -12,-1.9 -12,-2.2 -2,-0.4 2,-0.4 -0.944 52.0 -84.0-167.0-178.8 66.9 -1.3 1.0 28 25 A I E -AC 14 42A 44 14,-1.9 14,-1.7 -2,-0.3 2,-0.6 -0.863 44.4-107.5-106.8 139.1 66.9 1.5 3.6 29 26 A L E + C 0 41A 9 -16,-2.2 -17,-1.9 -2,-0.4 12,-0.2 -0.492 45.7 166.6 -66.0 109.1 65.1 4.8 3.0 30 27 A Y E - 0 0 133 10,-1.4 2,-0.3 -2,-0.6 11,-0.2 0.910 60.4 -6.8 -91.6 -52.2 67.9 7.3 2.4 31 28 A T E - C 0 40A 54 9,-1.8 9,-2.2 -20,-0.0 2,-0.5 -0.998 55.2-147.2-150.2 145.5 66.2 10.4 0.9 32 29 A I E - C 0 39A 75 -2,-0.3 2,-0.7 7,-0.2 7,-0.2 -0.960 6.4-168.4-118.5 124.0 62.7 11.3 -0.2 33 30 A D E > + C 0 38A 63 5,-2.0 5,-2.1 -2,-0.5 3,-0.4 -0.851 11.0 172.0-112.1 95.0 62.1 13.8 -3.1 34 31 A T T > 5S+ 0 0 125 -2,-0.7 3,-1.8 1,-0.2 -1,-0.2 0.905 73.6 64.2 -67.9 -38.6 58.4 14.8 -3.1 35 32 A E T 3 5S+ 0 0 171 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.796 113.8 32.0 -58.7 -32.1 58.9 17.5 -5.8 36 33 A N T 3 5S- 0 0 91 -3,-0.4 -1,-0.3 2,-0.2 -2,-0.2 0.202 105.6-119.6-112.6 13.9 60.0 15.0 -8.4 37 34 A S T < 5S+ 0 0 79 -3,-1.8 35,-2.0 1,-0.2 2,-0.3 0.871 73.1 128.7 50.0 42.2 57.9 12.0 -7.3 38 35 A T E < -CD 33 71A 28 -5,-2.1 -5,-2.0 33,-0.2 2,-0.4 -0.945 44.7-159.0-131.4 149.2 61.2 10.1 -6.8 39 36 A V E -CD 32 70A 38 31,-2.2 31,-2.1 -2,-0.3 2,-0.5 -0.985 6.2-152.9-129.4 138.2 62.7 8.0 -4.0 40 37 A A E -CD 31 69A 8 -9,-2.2 -9,-1.8 -2,-0.4 -10,-1.4 -0.945 11.2-169.1-113.8 127.6 66.4 7.2 -3.4 41 38 A L E -CD 29 68A 10 27,-2.1 27,-2.1 -2,-0.5 2,-0.3 -0.918 2.1-162.4-116.9 139.5 67.4 4.0 -1.5 42 39 A A E +CD 28 67A 20 -14,-1.7 -14,-1.9 -2,-0.4 25,-0.2 -0.809 69.4 26.8-117.1 159.5 70.9 3.1 -0.2 43 40 A K E S+ 0 0 164 23,-1.0 2,-0.4 22,-0.3 -1,-0.2 0.959 87.3 157.8 55.9 55.1 72.4 -0.2 0.9 44 41 A V E - D 0 65A 1 21,-1.9 21,-2.3 -3,-0.2 2,-0.3 -0.875 23.8-175.0-119.2 142.6 69.9 -2.1 -1.4 45 42 A R E -C 26 0A 134 -19,-2.1 -19,-2.1 -2,-0.4 2,-0.5 -0.969 24.7-123.2-135.2 150.7 70.1 -5.5 -2.9 46 43 A S E -C 25 0A 36 17,-0.4 -21,-0.2 -2,-0.3 15,-0.2 -0.831 11.8-153.9 -96.5 128.0 67.9 -7.5 -5.3 47 44 A F - 0 0 107 -23,-2.0 2,-0.3 -2,-0.5 -1,-0.1 0.890 61.1 -64.4 -69.4 -40.3 66.6 -10.8 -4.0 48 45 A G - 0 0 31 -24,-0.5 -24,-0.7 1,-0.1 -1,-0.3 -0.903 23.6-138.4 167.8 168.0 66.3 -12.4 -7.4 49 46 A T S > S+ 0 0 22 -2,-0.3 3,-1.8 9,-0.2 -1,-0.1 0.629 92.1 73.3-115.6 -30.6 64.5 -12.3 -10.8 50 47 A E T 3 S+ 0 0 181 1,-0.3 -2,-0.0 8,-0.1 -27,-0.0 0.777 84.3 71.6 -58.5 -27.2 63.9 -16.0 -11.5 51 48 A D T 3 S+ 0 0 145 1,-0.3 -1,-0.3 2,-0.0 -2,-0.1 0.837 106.0 39.1 -57.8 -33.2 61.2 -15.9 -8.8 52 49 A R S < S- 0 0 135 -3,-1.8 -1,-0.3 -31,-0.1 -4,-0.0 -0.860 97.1-132.8-119.2 95.0 59.1 -13.9 -11.3 53 50 A P - 0 0 110 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 -0.159 31.7-179.9 -50.5 130.4 59.6 -15.4 -14.8 54 51 A T - 0 0 58 2,-0.1 4,-0.1 4,-0.0 -33,-0.0 -0.861 42.1-115.8-129.8 165.0 60.3 -12.7 -17.4 55 52 A D S S+ 0 0 145 -2,-0.3 -1,-0.0 1,-0.1 0, 0.0 0.509 102.5 69.4 -77.9 -4.1 61.0 -12.5 -21.2 56 53 A R S S- 0 0 188 2,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.919 84.7-134.3-118.1 106.9 64.5 -11.1 -20.4 57 54 A P - 0 0 132 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.334 21.0-159.4 -58.8 131.9 67.0 -13.6 -18.8 58 55 A I - 0 0 95 -4,-0.1 -9,-0.2 -2,-0.0 -8,-0.1 -0.965 12.1-130.2-119.4 130.7 68.9 -12.1 -15.9 59 56 A A - 0 0 74 -2,-0.4 2,-0.1 1,-0.1 0, 0.0 -0.452 35.3 -97.5 -75.7 148.6 72.2 -13.5 -14.5 60 57 A P - 0 0 120 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.440 42.4-173.0 -69.0 135.8 72.5 -14.1 -10.7 61 58 A R - 0 0 147 -15,-0.2 -15,-0.1 -2,-0.1 -3,-0.0 -0.997 22.6-176.3-134.8 131.3 74.2 -11.3 -8.7 62 59 A D + 0 0 168 -2,-0.4 2,-0.3 2,-0.1 -1,-0.0 -0.072 52.6 113.0-112.8 31.8 75.2 -11.3 -5.1 63 60 A E - 0 0 103 -17,-0.1 -17,-0.4 0, 0.0 2,-0.4 -0.796 58.5-135.5-107.3 147.6 76.5 -7.7 -5.0 64 61 A T - 0 0 76 -2,-0.3 2,-0.4 -19,-0.1 -19,-0.2 -0.807 13.2-137.1-102.9 142.6 75.0 -4.8 -3.1 65 62 A F E -D 44 0A 92 -21,-2.3 -21,-1.9 -2,-0.4 -22,-0.3 -0.840 0.6-151.6-102.1 132.4 74.5 -1.3 -4.6 66 63 A E E S+ 0 0 168 -2,-0.4 -23,-1.0 1,-0.3 2,-0.4 0.888 82.8 13.1 -66.3 -40.5 75.3 1.8 -2.6 67 64 A Y E +D 42 0A 111 -25,-0.2 2,-0.3 -24,-0.1 -1,-0.3 -0.965 63.3 165.8-146.8 121.9 72.8 4.0 -4.4 68 65 A I E -D 41 0A 38 -27,-2.1 -27,-2.1 -2,-0.4 2,-0.4 -0.997 20.4-147.2-134.2 143.8 69.8 3.3 -6.7 69 66 A I E -D 40 0A 109 -2,-0.3 2,-0.4 -29,-0.2 -29,-0.2 -0.891 12.4-174.0-112.4 138.2 67.0 5.6 -7.7 70 67 A F E -D 39 0A 24 -31,-2.1 -31,-2.2 -2,-0.4 2,-0.3 -0.989 13.9-142.2-130.1 141.3 63.4 4.5 -8.5 71 68 A R E >> -D 38 0A 148 -2,-0.4 4,-2.1 -33,-0.2 3,-0.8 -0.762 23.5-120.7-102.2 149.1 60.5 6.6 -9.9 72 69 A G T 34 S+ 0 0 46 -35,-2.0 -34,-0.1 -2,-0.3 -1,-0.1 0.778 111.6 61.7 -55.7 -27.9 56.9 6.3 -8.8 73 70 A S T 34 S+ 0 0 93 -36,-0.2 -1,-0.2 1,-0.2 -35,-0.0 0.903 109.7 37.2 -67.1 -42.1 56.0 5.6 -12.4 74 71 A D T <4 S+ 0 0 41 -3,-0.8 -54,-1.3 -55,-0.0 -2,-0.2 0.816 99.8 90.6 -82.0 -32.1 58.1 2.4 -12.6 75 72 A I E < -B 19 0A 28 -4,-2.1 -56,-0.2 -56,-0.2 3,-0.1 -0.351 52.4-172.2 -65.5 144.5 57.4 1.2 -9.0 76 73 A K E + 0 0 163 -58,-2.7 2,-0.3 1,-0.4 -57,-0.2 0.803 65.0 1.0-103.9 -46.0 54.3 -1.0 -8.6 77 74 A D E -B 18 0A 81 -59,-1.6 -59,-2.3 2,-0.0 2,-0.4 -0.997 54.9-157.4-148.2 149.1 53.9 -1.3 -4.9 78 75 A L E +B 17 0A 88 -2,-0.3 2,-0.4 -61,-0.2 -61,-0.2 -0.994 12.3 178.1-131.4 129.2 55.6 -0.0 -1.7 79 76 A T E -B 16 0A 77 -63,-2.1 -63,-2.4 -2,-0.4 2,-0.3 -0.996 17.5-143.5-132.5 136.0 55.4 -1.6 1.8 80 77 A V E -B 15 0A 59 -2,-0.4 -65,-0.2 -65,-0.2 -2,-0.0 -0.749 5.6-164.3 -98.8 143.9 57.1 -0.5 5.0 81 78 A C S S+ 0 0 68 -67,-2.0 -66,-0.1 -2,-0.3 -1,-0.1 0.815 75.8 65.6 -93.8 -37.1 58.4 -3.0 7.6 82 79 A E S S- 0 0 75 -68,-0.8 -1,-0.1 -72,-0.1 -69,-0.0 -0.788 74.8-153.7 -90.9 117.5 58.8 -0.6 10.6 83 80 A P - 0 0 101 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.534 26.4 -96.8 -86.4 156.4 55.4 0.7 11.9 84 81 A P - 0 0 67 0, 0.0 -79,-0.1 0, 0.0 3,-0.1 -0.527 36.8-133.9 -74.1 135.9 55.0 4.1 13.7 85 82 A K - 0 0 161 -2,-0.2 -78,-0.0 1,-0.1 -77,-0.0 -0.575 32.3 -87.8 -88.6 152.2 54.9 3.9 17.5 86 83 A P - 0 0 133 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.271 47.2-165.0 -57.8 140.5 52.3 5.7 19.7 87 84 A I 0 0 90 -3,-0.1 -80,-0.0 -79,-0.0 -79,-0.0 -0.934 360.0 360.0-129.9 153.7 53.2 9.3 20.6 88 85 A M 0 0 260 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.865 360.0 360.0-151.5 360.0 51.9 11.8 23.2