==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/DNA 21-SEP-12 3VXV . COMPND 2 MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,M.ARIYOSHI,M.SHIRAKAWA . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6600.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 46.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 71 A K 0 0 117 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -64.3 -8.6 -10.3 15.0 2 72 A P + 0 0 133 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.883 360.0 30.0 -48.2 -50.3 -11.2 -9.1 12.4 3 73 A V S S- 0 0 51 4,-0.1 3,-0.2 6,-0.0 4,-0.1 -0.984 113.7-110.3-100.4 118.0 -8.4 -9.1 9.8 4 74 A P > - 0 0 70 0, 0.0 3,-2.2 0, 0.0 -1,-0.0 -0.069 48.3 -76.9 -48.2 145.6 -6.0 -11.9 10.9 5 75 A C T 3 S+ 0 0 130 1,-0.3 3,-0.1 -4,-0.0 0, 0.0 -0.204 116.4 7.6 -53.5 127.7 -2.7 -10.6 12.3 6 76 A G T 3 S+ 0 0 56 1,-0.3 -1,-0.3 -3,-0.2 2,-0.2 0.300 104.0 109.3 86.2 -11.1 -0.3 -9.5 9.5 7 77 A W < - 0 0 50 -3,-2.2 2,-0.4 22,-0.1 -1,-0.3 -0.625 56.1-145.9 -89.0 161.9 -2.9 -9.9 6.6 8 78 A E E -A 28 0A 115 20,-2.5 20,-2.5 -2,-0.2 2,-0.4 -0.967 3.9-152.4-127.8 144.1 -4.4 -6.9 4.8 9 79 A R E -A 27 0A 134 -2,-0.4 2,-0.4 18,-0.2 18,-0.2 -0.938 7.1-163.9-116.7 139.6 -7.9 -6.5 3.4 10 80 A V E -A 26 0A 24 16,-2.9 16,-2.0 -2,-0.4 2,-0.4 -0.990 3.5-170.8-121.8 132.8 -8.8 -4.3 0.5 11 81 A V E +A 25 0A 72 -2,-0.4 2,-0.3 14,-0.2 14,-0.2 -0.977 12.6 174.6-116.3 131.2 -12.3 -3.1 -0.4 12 82 A K E -A 24 0A 126 12,-2.5 12,-2.8 -2,-0.4 2,-0.5 -0.987 21.4-142.3-134.7 152.5 -12.9 -1.4 -3.7 13 83 A Q E -A 23 0A 100 -2,-0.3 10,-0.2 10,-0.2 9,-0.1 -0.950 21.4-125.8-113.7 123.1 -16.0 -0.1 -5.5 14 84 A R - 0 0 99 8,-3.0 7,-2.8 -2,-0.5 3,-0.1 -0.357 21.8-172.1 -63.7 143.0 -16.4 -0.4 -9.3 15 85 A L + 0 0 148 5,-0.2 2,-0.3 6,-0.1 -1,-0.1 0.522 56.7 33.4-116.2 -9.6 -17.2 3.0 -10.9 16 86 A S S S+ 0 0 93 3,-0.1 3,-0.4 0, 0.0 -1,-0.1 -0.888 84.6 32.3-149.0 169.6 -17.9 2.2 -14.6 17 87 A G S > S- 0 0 65 -2,-0.3 3,-1.7 1,-0.2 0, 0.0 -0.114 105.9 -42.8 70.9-170.5 -19.3 -0.3 -17.1 18 88 A K T 3 S+ 0 0 222 1,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.740 139.1 52.9 -64.5 -25.8 -22.2 -2.8 -16.5 19 89 A T T > S+ 0 0 59 -3,-0.4 3,-2.1 2,-0.1 -1,-0.3 0.300 74.3 145.6 -97.7 12.4 -20.9 -3.6 -13.0 20 90 A A T < + 0 0 52 -3,-1.7 -5,-0.2 1,-0.2 3,-0.1 -0.197 68.9 25.8 -44.5 133.4 -20.6 -0.0 -11.8 21 91 A G T 3 S+ 0 0 37 -7,-2.8 -1,-0.2 1,-0.3 2,-0.1 0.055 90.8 121.3 95.1 -25.4 -21.4 0.0 -8.0 22 92 A K < - 0 0 143 -3,-2.1 -8,-3.0 -9,-0.1 -1,-0.3 -0.453 57.0-131.6 -70.5 147.6 -20.4 -3.6 -7.3 23 93 A F E -A 13 0A 129 -10,-0.2 2,-0.4 -2,-0.1 -10,-0.2 -0.697 12.3-158.2 -98.9 149.2 -17.6 -4.1 -4.6 24 94 A D E -A 12 0A 56 -12,-2.8 -12,-2.5 -2,-0.3 2,-0.4 -0.998 10.1-170.9-127.2 136.7 -14.5 -6.3 -4.9 25 95 A V E +A 11 0A 56 -2,-0.4 2,-0.3 11,-0.2 -14,-0.2 -0.976 11.2 164.1-129.1 131.6 -12.8 -7.5 -1.7 26 96 A Y E -A 10 0A 42 -16,-2.0 -16,-2.9 -2,-0.4 2,-0.3 -0.968 23.0-137.0-143.9 164.7 -9.4 -9.2 -1.6 27 97 A F E -AB 9 35A 52 8,-2.2 8,-2.9 -2,-0.3 2,-0.4 -0.941 3.2-148.8-124.0 150.4 -6.8 -10.0 1.0 28 98 A I E -AB 8 34A 43 -20,-2.5 -20,-2.5 -2,-0.3 6,-0.2 -0.978 21.7-137.6-120.4 124.9 -2.9 -9.9 1.0 29 99 A S > - 0 0 5 4,-2.4 3,-2.0 -2,-0.4 -23,-0.1 -0.163 31.9 -98.4 -75.5 168.8 -1.1 -12.4 3.1 30 100 A P T 3 S+ 0 0 72 0, 0.0 -1,-0.1 0, 0.0 -23,-0.1 0.794 127.5 53.9 -62.3 -22.6 1.9 -11.5 5.3 31 101 A Q T 3 S- 0 0 122 2,-0.1 -24,-0.1 1,-0.0 -25,-0.0 0.392 125.6-101.4 -89.2 4.3 4.0 -12.9 2.5 32 102 A G S < S+ 0 0 51 -3,-2.0 2,-0.4 1,-0.3 -25,-0.0 0.580 70.1 150.5 90.0 10.2 2.4 -10.6 -0.2 33 103 A L - 0 0 80 1,-0.0 -4,-2.4 2,-0.0 2,-0.5 -0.649 37.4-142.6 -81.8 132.6 0.1 -13.4 -1.7 34 104 A K E -B 28 0A 115 -2,-0.4 2,-0.5 -6,-0.2 -6,-0.2 -0.794 14.5-169.5-100.3 125.9 -3.1 -11.9 -3.1 35 105 A F E +B 27 0A 22 -8,-2.9 -8,-2.2 -2,-0.5 3,-0.0 -0.967 10.0 179.4-116.8 117.4 -6.4 -13.8 -2.7 36 106 A R + 0 0 184 -2,-0.5 2,-0.3 -10,-0.2 -11,-0.2 0.326 67.2 39.4 -93.1 3.5 -9.4 -12.5 -4.7 37 107 A S S > S- 0 0 53 1,-0.1 4,-1.9 -10,-0.1 5,-0.2 -0.998 71.2-127.4-152.0 154.8 -11.9 -15.2 -3.5 38 108 A K H > S+ 0 0 190 -2,-0.3 4,-3.1 1,-0.2 5,-0.2 0.875 110.1 58.6 -70.6 -37.8 -12.9 -17.1 -0.5 39 109 A R H > S+ 0 0 217 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.930 108.7 42.4 -56.9 -48.0 -12.5 -20.4 -2.5 40 110 A S H > S+ 0 0 46 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.938 115.8 48.2 -71.4 -41.6 -8.9 -19.8 -3.4 41 111 A L H X S+ 0 0 32 -4,-1.9 4,-3.2 2,-0.2 -2,-0.2 0.953 111.3 51.8 -60.2 -47.3 -8.0 -18.6 0.2 42 112 A A H X S+ 0 0 51 -4,-3.1 4,-1.3 1,-0.2 -2,-0.2 0.931 109.9 49.0 -54.2 -48.2 -9.8 -21.6 1.7 43 113 A N H >X S+ 0 0 115 -4,-2.3 4,-0.6 -5,-0.2 3,-0.5 0.930 112.9 47.3 -57.9 -45.8 -7.9 -24.0 -0.5 44 114 A Y H >X S+ 0 0 40 -4,-2.4 4,-2.3 1,-0.2 3,-0.9 0.916 106.1 58.9 -62.0 -41.0 -4.6 -22.3 0.4 45 115 A L H 3X S+ 0 0 77 -4,-3.2 4,-1.6 1,-0.2 -1,-0.2 0.781 88.0 76.5 -64.7 -25.1 -5.5 -22.4 4.2 46 116 A L H << S+ 0 0 142 -4,-1.3 -1,-0.2 -3,-0.5 -2,-0.2 0.902 118.7 9.2 -49.4 -49.1 -5.8 -26.2 4.1 47 117 A K H << S+ 0 0 181 -3,-0.9 -1,-0.2 -4,-0.6 -2,-0.2 0.651 138.1 41.3-105.8 -20.3 -2.0 -26.7 4.1 48 118 A N H < S+ 0 0 86 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.2 0.221 82.0 92.6-117.7 12.3 -0.7 -23.2 4.7 49 119 A G < + 0 0 43 -4,-1.6 2,-0.2 -5,-0.2 -1,-0.1 0.669 64.9 96.6 -84.6 -15.5 -2.9 -21.6 7.4 50 120 A E - 0 0 140 -5,-0.2 2,-0.3 -3,-0.2 -3,-0.0 -0.544 51.5-167.6 -74.8 141.4 -0.7 -22.7 10.4 51 121 A T - 0 0 126 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.952 7.8-161.1-121.5 144.6 1.8 -20.4 12.0 52 122 A F - 0 0 151 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.910 4.2-148.6-128.1 154.2 4.4 -21.6 14.5 53 123 A L - 0 0 125 -2,-0.3 3,-0.0 3,-0.0 -2,-0.0 -0.940 9.2-171.7-122.9 140.8 6.6 -20.0 17.2 54 124 A K > - 0 0 126 -2,-0.4 3,-2.0 1,-0.1 4,-0.2 -0.912 38.4-111.7-124.1 155.9 10.1 -20.8 18.5 55 125 A P G > S+ 0 0 117 0, 0.0 3,-2.0 0, 0.0 -1,-0.1 0.871 116.4 63.8 -52.2 -37.1 12.1 -19.4 21.4 56 126 A E G 3 S+ 0 0 153 1,-0.3 -3,-0.0 3,-0.1 0, 0.0 0.626 87.8 70.7 -67.1 -11.2 14.5 -17.8 18.9 57 127 A D G < S+ 0 0 87 -3,-2.0 2,-0.5 1,-0.1 -1,-0.3 0.577 91.6 70.1 -78.0 -11.2 11.6 -15.7 17.5 58 128 A F S < S- 0 0 117 -3,-2.0 2,-0.9 -4,-0.2 -1,-0.1 -0.942 74.1-149.3-115.4 121.6 11.7 -13.6 20.7 59 129 A N + 0 0 127 -2,-0.5 -3,-0.1 1,-0.1 -2,-0.0 -0.796 18.9 173.8 -92.4 103.7 14.6 -11.4 21.5 60 130 A F + 0 0 191 -2,-0.9 2,-0.3 2,-0.0 -1,-0.1 0.250 50.1 90.2 -87.7 16.7 15.2 -11.1 25.3 61 131 A T - 0 0 97 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.815 62.9-141.5-121.7 154.1 18.4 -9.1 25.2 62 132 A V - 0 0 142 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.938 31.9-124.7-107.7 127.3 19.4 -5.5 25.2 63 133 A L - 0 0 154 -2,-0.5 2,-0.1 1,-0.1 0, 0.0 -0.368 24.0-126.9 -71.6 150.5 22.5 -4.7 22.8 64 134 A P 0 0 106 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.266 360.0 360.0 -84.0 174.3 25.6 -3.0 24.2 65 135 A K 0 0 243 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.851 360.0 360.0 132.9 360.0 27.6 0.1 23.1