==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/DNA 21-SEP-12 3VXX . COMPND 2 MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,M.ARIYOSHI,M.SHIRAKAWA . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6403.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 49.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 15.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 72 A P 0 0 180 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -54.7 11.3 9.4 12.6 2 73 A V - 0 0 59 4,-0.1 3,-0.2 6,-0.0 4,-0.1 -0.972 360.0-112.6 -96.8 116.5 8.6 9.1 10.0 3 74 A P > - 0 0 79 0, 0.0 3,-2.2 0, 0.0 0, 0.0 -0.122 43.8 -78.4 -53.5 147.9 6.1 11.8 11.2 4 75 A C T 3 S+ 0 0 129 1,-0.3 3,-0.1 3,-0.0 0, 0.0 -0.132 116.4 12.1 -52.5 131.3 2.8 10.5 12.5 5 76 A G T 3 S+ 0 0 57 1,-0.3 -1,-0.3 -3,-0.2 2,-0.2 0.193 104.5 109.0 86.6 -17.6 0.3 9.6 9.7 6 77 A W < - 0 0 53 -3,-2.2 2,-0.4 22,-0.1 -1,-0.3 -0.556 55.1-148.0 -90.8 158.9 3.0 9.8 7.0 7 78 A E E -A 27 0A 108 20,-2.4 20,-2.4 -2,-0.2 2,-0.5 -0.968 1.6-152.4-127.9 142.4 4.5 6.8 5.1 8 79 A R E -A 26 0A 140 -2,-0.4 2,-0.5 18,-0.2 18,-0.2 -0.954 9.1-165.3-115.8 130.1 7.9 6.4 3.6 9 80 A V E -A 25 0A 24 16,-2.8 16,-2.0 -2,-0.5 2,-0.4 -0.965 1.8-168.8-118.4 131.5 8.6 4.2 0.6 10 81 A V E +A 24 0A 74 -2,-0.5 2,-0.3 14,-0.2 14,-0.2 -0.944 9.1 176.4-114.4 136.7 12.1 3.0 -0.4 11 82 A K E -A 23 0A 135 12,-2.1 12,-2.2 -2,-0.4 2,-0.4 -0.978 18.2-144.9-135.5 151.6 12.8 1.3 -3.8 12 83 A Q E -A 22 0A 105 -2,-0.3 10,-0.2 10,-0.2 9,-0.1 -0.972 22.8-121.3-116.6 133.0 16.0 0.1 -5.5 13 84 A R - 0 0 99 8,-3.2 7,-2.3 -2,-0.4 3,-0.1 -0.401 22.7-170.7 -68.4 145.6 16.5 0.2 -9.2 14 85 A L + 0 0 152 5,-0.2 2,-0.3 1,-0.1 -1,-0.1 0.763 57.1 22.1-108.5 -33.7 17.2 -3.1 -10.9 15 86 A S S S+ 0 0 99 3,-0.1 3,-0.3 4,-0.0 -1,-0.1 -0.816 86.3 38.5-137.7 171.1 18.2 -2.5 -14.5 16 87 A G S > S- 0 0 62 -2,-0.3 3,-1.4 1,-0.2 -3,-0.0 -0.258 104.5 -43.0 81.9-172.3 19.8 0.1 -16.9 17 88 A K T 3 S+ 0 0 216 1,-0.3 -1,-0.2 -2,-0.1 0, 0.0 0.862 138.2 50.4 -58.3 -39.3 22.6 2.6 -16.2 18 89 A T T > S+ 0 0 58 -3,-0.3 3,-1.9 2,-0.1 -1,-0.3 0.082 75.8 146.1 -93.8 23.0 21.2 3.5 -12.8 19 90 A A T < + 0 0 49 -3,-1.4 -5,-0.2 1,-0.2 3,-0.1 -0.364 67.8 27.4 -57.7 136.3 20.7 -0.1 -11.5 20 91 A G T 3 S+ 0 0 36 -7,-2.3 -1,-0.2 1,-0.4 -6,-0.1 0.148 91.6 123.0 94.3 -19.9 21.4 -0.2 -7.7 21 92 A K < - 0 0 138 -3,-1.9 -8,-3.2 -9,-0.1 -1,-0.4 -0.335 55.7-129.1 -70.8 159.6 20.4 3.4 -7.1 22 93 A F E -A 12 0A 134 -10,-0.2 2,-0.4 -3,-0.1 -10,-0.2 -0.850 14.2-161.1-115.1 148.0 17.6 4.1 -4.6 23 94 A D E -A 11 0A 65 -12,-2.2 -12,-2.1 -2,-0.3 2,-0.4 -0.991 9.7-170.5-126.2 135.7 14.4 6.2 -4.8 24 95 A V E +A 10 0A 57 -2,-0.4 2,-0.3 11,-0.2 -14,-0.2 -0.971 8.3 170.0-125.5 139.2 12.5 7.5 -1.8 25 96 A Y E -A 9 0A 54 -16,-2.0 -16,-2.8 -2,-0.4 2,-0.4 -0.968 20.4-138.0-142.0 162.4 9.1 9.1 -1.6 26 97 A F E -AB 8 34A 53 8,-2.2 8,-2.8 -2,-0.3 2,-0.5 -0.925 3.8-152.7-119.2 144.8 6.6 10.1 1.1 27 98 A I E -AB 7 33A 40 -20,-2.4 -20,-2.4 -2,-0.4 6,-0.2 -0.982 19.3-141.5-114.3 128.2 2.9 9.8 1.3 28 99 A S > - 0 0 5 4,-2.5 3,-2.4 -2,-0.5 -22,-0.1 -0.308 33.2 -96.1 -80.5 168.4 1.0 12.3 3.5 29 100 A P T 3 S+ 0 0 71 0, 0.0 -1,-0.1 0, 0.0 -23,-0.1 0.739 128.1 51.7 -59.3 -20.2 -2.0 11.5 5.6 30 101 A Q T 3 S- 0 0 132 2,-0.1 -24,-0.1 0, 0.0 -25,-0.0 0.328 124.7-102.7 -96.4 4.9 -4.2 12.8 2.8 31 102 A G < + 0 0 50 -3,-2.4 2,-0.3 1,-0.3 -25,-0.0 0.540 68.3 151.8 88.8 7.2 -2.5 10.6 0.2 32 103 A L - 0 0 79 1,-0.0 -4,-2.5 -5,-0.0 2,-0.4 -0.571 36.8-141.4 -69.1 131.7 -0.3 13.3 -1.4 33 104 A K E -B 27 0A 124 -2,-0.3 2,-0.5 -6,-0.2 -6,-0.2 -0.825 15.9-170.2-100.1 132.1 2.9 11.8 -2.8 34 105 A F E +B 26 0A 20 -8,-2.8 -8,-2.2 -2,-0.4 3,-0.0 -0.970 12.3 176.4-124.1 118.9 6.3 13.7 -2.6 35 106 A R + 0 0 198 -2,-0.5 2,-0.3 -10,-0.2 -11,-0.2 0.382 67.1 46.1-101.6 2.6 9.3 12.4 -4.5 36 107 A S > - 0 0 54 1,-0.1 4,-1.8 -10,-0.1 5,-0.1 -0.991 69.7-132.9-143.4 151.7 11.7 15.2 -3.6 37 108 A K H > S+ 0 0 178 -2,-0.3 4,-2.9 2,-0.2 5,-0.2 0.860 109.3 58.7 -67.5 -34.9 12.8 17.1 -0.5 38 109 A R H > S+ 0 0 216 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.931 108.8 41.1 -59.5 -50.1 12.4 20.3 -2.5 39 110 A S H > S+ 0 0 43 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.882 116.0 50.7 -68.7 -36.7 8.7 19.8 -3.3 40 111 A L H X S+ 0 0 26 -4,-1.8 4,-2.8 2,-0.2 -2,-0.2 0.934 110.0 49.8 -66.0 -42.4 8.0 18.5 0.2 41 112 A A H X S+ 0 0 49 -4,-2.9 4,-1.0 1,-0.2 -2,-0.2 0.884 110.4 50.5 -63.2 -38.8 9.7 21.6 1.7 42 113 A N H >X S+ 0 0 117 -4,-2.0 3,-0.6 -5,-0.2 4,-0.6 0.940 112.7 46.1 -61.9 -47.0 7.6 23.9 -0.5 43 114 A Y H >X S+ 0 0 45 -4,-2.3 4,-2.0 1,-0.2 3,-0.8 0.929 107.8 57.5 -59.1 -48.2 4.4 22.2 0.5 44 115 A L H 3X S+ 0 0 77 -4,-2.8 4,-1.4 1,-0.2 -1,-0.2 0.715 88.0 78.5 -57.0 -27.2 5.4 22.3 4.2 45 116 A L H << S+ 0 0 137 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.929 118.7 5.9 -49.9 -54.2 5.7 26.1 4.1 46 117 A K H << S+ 0 0 184 -3,-0.8 -1,-0.2 -4,-0.6 -2,-0.2 0.597 137.7 46.6-104.4 -16.9 1.9 26.7 4.3 47 118 A N H < S+ 0 0 89 -4,-2.0 -3,-0.2 -5,-0.2 -2,-0.2 0.280 80.8 92.7-113.7 10.6 0.6 23.2 4.8 48 119 A G < + 0 0 43 -4,-1.4 2,-0.2 -5,-0.2 -1,-0.1 0.701 64.2 95.5 -80.7 -19.5 2.9 21.7 7.6 49 120 A E - 0 0 143 -3,-0.2 2,-0.4 -5,-0.2 -3,-0.0 -0.468 51.7-166.8 -77.4 143.5 0.7 22.6 10.5 50 121 A T - 0 0 129 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.978 9.9-162.1-123.4 138.6 -1.9 20.2 12.1 51 122 A F - 0 0 148 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.861 3.5-150.9-122.3 160.2 -4.5 21.5 14.6 52 123 A L - 0 0 123 -2,-0.3 -2,-0.0 3,-0.0 3,-0.0 -0.969 7.0-169.8-132.3 143.7 -6.7 19.9 17.2 53 124 A K > - 0 0 113 -2,-0.3 3,-2.0 1,-0.1 4,-0.2 -0.884 38.4-111.7-126.3 159.4 -10.1 20.7 18.7 54 125 A P G > S+ 0 0 120 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 0.785 116.7 64.6 -58.0 -26.5 -12.1 19.3 21.7 55 126 A E G 3 S+ 0 0 152 1,-0.3 -3,-0.0 3,-0.1 0, 0.0 0.607 87.2 69.2 -72.8 -13.7 -14.5 17.9 19.2 56 127 A D G < S+ 0 0 86 -3,-2.0 2,-0.5 1,-0.1 -1,-0.3 0.571 92.7 71.6 -79.9 -6.6 -11.7 15.6 17.8 57 128 A F < - 0 0 115 -3,-1.3 2,-0.8 -4,-0.2 -1,-0.1 -0.938 69.6-154.4-119.7 119.2 -11.9 13.7 21.0 58 129 A N + 0 0 120 -2,-0.5 -3,-0.1 1,-0.1 -2,-0.0 -0.800 18.2 170.7 -94.8 107.3 -14.7 11.4 22.0 59 130 A F + 0 0 196 -2,-0.8 2,-0.3 2,-0.0 -1,-0.1 0.328 51.2 95.5 -92.9 6.9 -15.1 11.0 25.8 60 131 A T - 0 0 100 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.769 64.3-141.4-108.5 145.2 -18.4 9.2 25.6 61 132 A V - 0 0 145 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.909 32.2-121.2 -99.6 123.8 -19.4 5.5 25.6 62 133 A L 0 0 140 -2,-0.5 -1,-0.0 1,-0.1 0, 0.0 -0.072 360.0 360.0 -60.7 157.6 -22.2 4.7 23.2 63 134 A P 0 0 181 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.571 360.0 360.0 -89.3 360.0 -25.6 3.1 24.3