==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 06-JUL-04 1W2L . COMPND 2 MOLECULE: CYTOCHROME OXIDASE SUBUNIT II; . SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTHERMUS MARINUS; . AUTHOR V.SRINIVASAN,C.RAJENDRAN,F.L.SOUSA,A.M.P.MELO,L.M.SARAIVA, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5512.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A M 0 0 91 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 134.9 12.1 27.0 20.3 2 4 A P > - 0 0 87 0, 0.0 4,-2.4 0, 0.0 3,-0.4 -0.195 360.0-119.3 -56.7 144.5 11.7 27.1 24.2 3 5 A L H > S+ 0 0 69 1,-0.2 4,-2.7 2,-0.2 89,-0.2 0.866 109.3 53.3 -62.1 -42.0 9.8 24.2 25.6 4 6 A A H > S+ 0 0 28 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.901 112.2 47.4 -59.6 -38.2 6.9 26.2 27.2 5 7 A E H > S+ 0 0 106 -3,-0.4 4,-1.9 2,-0.2 -2,-0.2 0.915 112.6 47.1 -71.8 -43.9 6.3 27.9 23.9 6 8 A L H X S+ 0 0 20 -4,-2.4 4,-2.5 1,-0.2 -1,-0.2 0.922 110.1 55.4 -64.3 -37.2 6.4 24.7 21.9 7 9 A G H X S+ 0 0 0 -4,-2.7 4,-2.4 -5,-0.3 -2,-0.2 0.897 104.0 52.6 -66.1 -33.0 4.1 23.1 24.5 8 10 A A H X S+ 0 0 20 -4,-1.9 4,-1.1 2,-0.2 -1,-0.2 0.906 110.8 48.4 -64.5 -39.1 1.5 25.9 24.0 9 11 A R H X S+ 0 0 125 -4,-1.9 4,-2.9 1,-0.2 3,-0.4 0.924 112.4 47.6 -65.6 -42.4 1.6 25.2 20.3 10 12 A L H X S+ 0 0 4 -4,-2.5 4,-2.8 1,-0.2 6,-0.5 0.839 101.3 65.0 -68.3 -34.1 1.2 21.4 20.9 11 13 A Y H < S+ 0 0 24 -4,-2.4 6,-2.0 -5,-0.2 5,-0.3 0.851 115.3 32.4 -54.5 -37.3 -1.7 22.0 23.3 12 14 A R H >< S+ 0 0 151 -4,-1.1 3,-2.0 -3,-0.4 -2,-0.2 0.928 121.8 45.4 -80.5 -58.7 -3.5 23.4 20.3 13 15 A E H 3< S+ 0 0 136 -4,-2.9 -3,-0.2 1,-0.3 -2,-0.2 0.809 112.6 49.8 -62.2 -34.7 -2.1 21.2 17.5 14 16 A K T 3< S- 0 0 77 -4,-2.8 -1,-0.3 -5,-0.2 -3,-0.1 0.301 113.6-115.2 -90.7 7.3 -2.4 17.9 19.2 15 17 A A S X S+ 0 0 39 -3,-2.0 3,-1.9 -5,-0.1 4,-0.4 0.456 74.5 132.2 80.2 6.8 -6.1 18.6 20.2 16 18 A C G >> + 0 0 16 -6,-0.5 4,-2.0 1,-0.3 3,-1.8 0.869 66.8 65.5 -56.0 -37.2 -5.5 18.7 24.0 17 19 A F G 34 S+ 0 0 107 -6,-2.0 -1,-0.3 1,-0.3 -5,-0.1 0.686 88.6 67.6 -55.0 -28.5 -7.5 21.9 24.1 18 20 A S G <4 S+ 0 0 64 -3,-1.9 10,-0.4 1,-0.2 -1,-0.3 0.753 118.8 18.3 -69.1 -24.5 -10.6 20.0 23.0 19 21 A C T <4 S+ 0 0 38 -3,-1.8 10,-2.2 -4,-0.4 2,-0.4 0.533 122.2 57.2-120.9 -14.9 -10.8 18.1 26.3 20 22 A H < - 0 0 29 -4,-2.0 -1,-0.2 8,-0.1 11,-0.2 -0.976 63.0-159.9-131.3 120.1 -8.7 20.1 28.7 21 23 A S - 0 0 8 4,-0.6 11,-2.8 -2,-0.4 12,-0.4 -0.322 14.9-149.9 -82.9 168.7 -9.1 23.8 29.7 22 24 A I S S+ 0 0 68 9,-0.2 12,-0.1 10,-0.2 -1,-0.1 0.250 88.7 66.9-119.2 10.7 -6.5 26.1 31.2 23 25 A D S S- 0 0 108 2,-0.1 3,-0.1 10,-0.1 -1,-0.0 0.253 116.2 -95.8-116.6 13.5 -9.0 28.2 33.1 24 26 A G S S+ 0 0 46 1,-0.3 7,-0.3 6,-0.0 2,-0.1 0.253 80.7 133.0 92.7 -11.1 -10.3 25.8 35.6 25 27 A S - 0 0 48 5,-0.1 -4,-0.6 1,-0.1 2,-0.5 -0.377 56.6-122.8 -74.4 143.3 -13.4 24.7 33.7 26 28 A R + 0 0 146 -2,-0.1 2,-0.1 4,-0.1 -6,-0.1 -0.763 38.5 162.3 -84.1 127.1 -14.3 21.1 33.4 27 29 A L S S- 0 0 76 2,-2.1 -8,-0.1 -2,-0.5 -7,-0.1 -0.186 71.7 -50.3-114.7-142.7 -14.6 19.9 29.8 28 30 A V S S+ 0 0 73 -10,-0.4 -8,-0.1 -2,-0.1 -9,-0.1 0.935 133.9 29.8 -59.2 -43.1 -14.6 16.2 28.8 29 31 A G S S- 0 0 8 -10,-2.2 -2,-2.1 1,-0.1 -8,-0.3 -0.584 104.4 -77.6-109.0 174.4 -11.4 16.0 30.9 30 32 A P - 0 0 24 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 -0.339 52.0 -98.4 -71.2 153.0 -10.0 17.8 33.9 31 33 A S - 0 0 20 -7,-0.3 -9,-0.2 -11,-0.2 -5,-0.1 -0.376 16.7-140.4 -69.0 149.8 -8.6 21.3 33.6 32 34 A F S > S+ 0 0 19 -11,-2.8 3,-2.0 2,-0.1 4,-0.5 0.652 70.8 110.9 -79.9 -18.8 -4.8 21.7 33.5 33 35 A K T 3 S- 0 0 107 -12,-0.4 64,-0.3 1,-0.3 -2,-0.1 -0.422 97.0 -2.4 -57.3 116.0 -5.0 24.8 35.8 34 36 A G T 3 S+ 0 0 29 62,-2.9 -1,-0.3 -2,-0.3 63,-0.2 0.553 98.6 123.7 79.4 3.2 -3.5 23.8 39.1 35 37 A L X + 0 0 20 -3,-2.0 3,-2.5 61,-0.4 15,-0.3 0.966 48.0 80.1 -65.1 -53.3 -2.8 20.2 37.9 36 38 A Y T 3 S+ 0 0 75 -4,-0.5 15,-0.2 57,-0.4 3,-0.1 -0.428 107.9 12.3 -63.1 124.8 0.9 20.0 38.5 37 39 A G T 3 S+ 0 0 54 13,-2.5 -1,-0.3 1,-0.3 2,-0.1 0.342 101.0 121.4 85.9 3.0 1.6 19.4 42.1 38 40 A S < - 0 0 32 -3,-2.5 12,-2.8 12,-0.2 2,-0.4 -0.454 67.6-108.3 -87.6 160.9 -2.0 18.5 43.0 39 41 A T E -A 49 0A 94 10,-0.2 2,-0.4 -2,-0.1 10,-0.2 -0.790 33.0-156.6 -89.0 134.3 -3.2 15.2 44.5 40 42 A R E -A 48 0A 47 8,-3.2 8,-2.0 -2,-0.4 2,-0.4 -0.919 6.3-154.5-110.1 141.5 -5.2 12.9 42.1 41 43 A T E -A 47 0A 45 -2,-0.4 27,-2.8 6,-0.2 6,-0.2 -0.965 17.7-148.7-112.8 131.5 -7.7 10.2 43.0 42 44 A F B > -B 67 0B 0 4,-2.8 3,-2.6 -2,-0.4 25,-0.2 -0.422 32.0 -96.6 -99.0 172.4 -8.2 7.3 40.6 43 45 A E T 3 S+ 0 0 124 23,-2.4 24,-0.1 1,-0.3 -1,-0.0 0.757 123.9 55.2 -60.5 -26.0 -11.2 5.2 39.7 44 46 A D T 3 S- 0 0 103 22,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.344 119.1-107.6 -87.5 1.7 -9.8 2.5 42.1 45 47 A G S < S+ 0 0 51 -3,-2.6 -2,-0.1 1,-0.3 2,-0.0 0.252 79.7 127.4 91.8 -9.4 -9.6 4.9 45.1 46 48 A T - 0 0 69 -5,-0.1 -4,-2.8 1,-0.0 -1,-0.3 -0.316 44.2-151.7 -73.4 163.4 -5.8 5.1 45.0 47 49 A T E +A 41 0A 86 -6,-0.2 2,-0.3 -3,-0.1 -6,-0.2 -0.920 17.3 172.8-135.4 160.3 -4.2 8.5 44.9 48 50 A A E -A 40 0A 29 -8,-2.0 -8,-3.2 -2,-0.3 2,-0.3 -0.973 34.4-103.7-160.0 157.0 -1.0 10.0 43.7 49 51 A V E -A 39 0A 68 -2,-0.3 2,-1.8 -10,-0.2 -10,-0.2 -0.584 35.2-116.7 -85.0 143.1 0.6 13.4 43.3 50 52 A A + 0 0 0 -12,-2.8 -13,-2.5 -15,-0.3 -12,-0.2 -0.568 56.8 153.1 -80.7 79.9 0.7 14.9 39.8 51 53 A D > - 0 0 69 -2,-1.8 4,-2.2 -15,-0.2 5,-0.2 -0.282 63.5 -83.0 -95.2-179.0 4.5 15.0 39.4 52 54 A E H > S+ 0 0 81 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.914 129.2 51.7 -57.2 -44.5 6.4 14.9 36.2 53 55 A N H > S+ 0 0 117 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.887 108.6 51.3 -61.3 -39.4 6.3 11.2 36.0 54 56 A Y H > S+ 0 0 22 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.916 110.9 47.6 -63.8 -42.1 2.5 11.2 36.4 55 57 A L H X S+ 0 0 4 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.928 113.6 48.3 -62.9 -43.6 2.1 13.7 33.6 56 58 A R H X S+ 0 0 88 -4,-2.6 4,-2.9 2,-0.2 5,-0.3 0.928 113.2 47.2 -60.9 -48.0 4.4 11.7 31.4 57 59 A E H X S+ 0 0 42 -4,-2.7 4,-2.3 1,-0.2 7,-0.3 0.875 109.3 54.9 -62.4 -40.8 2.6 8.4 32.2 58 60 A S H < S+ 0 0 28 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.877 116.6 36.5 -62.9 -35.6 -0.8 10.1 31.6 59 61 A I H < S+ 0 0 19 -4,-1.7 -2,-0.2 -3,-0.2 -1,-0.2 0.892 126.4 35.0 -83.8 -46.8 0.2 11.2 28.1 60 62 A L H < S+ 0 0 32 -4,-2.9 -3,-0.2 1,-0.2 -2,-0.2 0.694 126.3 37.6 -88.1 -19.8 2.3 8.2 27.0 61 63 A Q S >< S- 0 0 112 -4,-2.3 3,-2.1 -5,-0.3 4,-0.3 -0.463 83.8-174.4-127.1 61.3 0.3 5.5 28.7 62 64 A P T 3 + 0 0 34 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.210 69.7 20.5 -60.2 140.8 -3.2 6.8 28.2 63 65 A G T 3 S+ 0 0 31 2,-0.3 3,-0.2 -5,-0.2 -5,-0.1 0.220 92.5 107.3 86.3 -12.3 -5.9 4.8 29.9 64 66 A A S < S+ 0 0 59 -3,-2.1 2,-0.4 -7,-0.3 -6,-0.1 0.905 92.4 13.6 -68.8 -42.7 -3.4 3.2 32.4 65 67 A K S S- 0 0 94 -4,-0.3 2,-0.5 -8,-0.1 -2,-0.3 -0.995 81.4-158.7-127.5 128.0 -4.5 5.2 35.5 66 68 A V - 0 0 14 -2,-0.4 -23,-2.4 -3,-0.2 -22,-0.2 -0.937 19.1-119.0-116.2 126.8 -7.8 7.1 35.2 67 69 A V B > -B 42 0B 21 -2,-0.5 3,-1.4 -25,-0.2 -25,-0.3 -0.292 44.1-100.3 -59.4 133.9 -8.9 10.0 37.3 68 70 A Q T 3 S+ 0 0 107 -27,-2.8 -1,-0.1 1,-0.2 -27,-0.1 -0.236 103.5 22.7 -58.8 142.5 -12.1 9.2 39.2 69 71 A G T 3 S+ 0 0 60 1,-0.3 -1,-0.2 -3,-0.1 -2,-0.1 0.617 101.2 102.0 77.2 17.9 -15.3 10.5 37.8 70 72 A Y S < S- 0 0 42 -3,-1.4 -1,-0.3 -4,-0.0 2,-0.1 -0.937 74.6-108.3-122.8 151.6 -14.0 10.9 34.2 71 73 A P - 0 0 72 0, 0.0 2,-1.6 0, 0.0 3,-0.2 -0.446 31.6-115.3 -74.7 151.7 -14.6 8.8 31.1 72 74 A N S S+ 0 0 93 1,-0.2 -6,-0.0 -2,-0.1 0, 0.0 -0.593 72.3 123.8 -89.5 76.1 -11.6 6.7 29.9 73 75 A V + 0 0 86 -2,-1.6 -1,-0.2 -45,-0.1 3,-0.1 0.268 18.8 142.1-126.2 14.6 -11.2 8.4 26.6 74 76 A M - 0 0 68 -3,-0.2 -2,-0.0 1,-0.1 -15,-0.0 -0.350 60.6-102.2 -57.2 130.1 -7.6 9.7 26.4 75 77 A P > - 0 0 51 0, 0.0 3,-0.7 0, 0.0 4,-0.1 -0.174 14.1-141.2 -59.1 143.2 -6.4 9.2 22.8 76 78 A A G > S+ 0 0 82 1,-0.2 3,-1.8 2,-0.1 4,-0.2 0.765 91.6 76.1 -65.3 -30.7 -4.1 6.4 21.8 77 79 A S G > S+ 0 0 74 1,-0.3 3,-1.6 2,-0.2 -1,-0.2 0.739 78.5 69.8 -64.8 -22.7 -2.2 8.6 19.4 78 80 A Y G X S+ 0 0 26 -3,-0.7 3,-1.8 1,-0.3 -1,-0.3 0.654 77.2 79.7 -71.6 -15.5 -0.2 10.4 22.1 79 81 A A G < S+ 0 0 59 -3,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.713 91.7 56.8 -59.7 -20.6 1.8 7.2 22.8 80 82 A S G < S+ 0 0 102 -3,-1.6 -1,-0.3 -4,-0.2 -2,-0.2 0.390 77.6 124.8 -89.4 -2.1 3.8 8.2 19.7 81 83 A L < - 0 0 14 -3,-1.8 -3,-0.0 -22,-0.1 -22,-0.0 -0.282 62.6-116.4 -63.6 143.7 4.8 11.7 20.9 82 84 A S > - 0 0 54 1,-0.1 4,-2.5 4,-0.0 5,-0.2 -0.237 24.8-105.6 -73.7 163.8 8.5 12.4 20.9 83 85 A E H > S+ 0 0 120 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.889 121.8 49.9 -59.0 -39.5 10.6 13.1 24.0 84 86 A R H > S+ 0 0 132 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.917 110.6 49.7 -65.8 -43.5 10.8 16.8 23.1 85 87 A E H > S+ 0 0 50 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.903 111.9 47.3 -64.9 -41.8 7.1 17.0 22.6 86 88 A V H X S+ 0 0 1 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.933 112.7 49.4 -63.4 -46.2 6.3 15.3 25.9 87 89 A A H X S+ 0 0 35 -4,-2.3 4,-2.4 -5,-0.2 -2,-0.2 0.898 112.1 49.3 -58.6 -40.8 8.7 17.6 27.7 88 90 A A H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 -81,-0.2 0.931 109.6 49.7 -65.6 -46.2 7.2 20.6 26.0 89 91 A L H X S+ 0 0 7 -4,-2.5 4,-2.6 1,-0.2 -1,-0.2 0.903 112.0 49.4 -59.2 -43.2 3.6 19.7 26.9 90 92 A I H X S+ 0 0 4 -4,-2.4 4,-2.9 2,-0.2 -1,-0.2 0.915 108.4 52.3 -65.2 -40.8 4.7 19.1 30.5 91 93 A E H X S+ 0 0 51 -4,-2.4 4,-1.1 2,-0.2 -2,-0.2 0.924 111.4 47.8 -59.4 -42.6 6.4 22.5 30.7 92 94 A F H >< S+ 0 0 17 -4,-2.4 3,-0.6 -89,-0.2 4,-0.3 0.948 113.0 48.1 -63.1 -45.2 3.2 24.1 29.4 93 95 A I H >< S+ 0 0 6 -4,-2.6 3,-2.1 1,-0.2 -57,-0.4 0.919 104.9 59.2 -60.8 -44.3 1.1 22.2 32.0 94 96 A K H 3< S+ 0 0 56 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.762 103.1 52.7 -59.9 -29.6 3.4 23.0 34.9 95 97 A Q T << S+ 0 0 116 -4,-1.1 2,-1.2 -3,-0.6 -1,-0.3 0.447 81.3 96.3 -88.3 2.2 2.9 26.7 34.4 96 98 A Q < 0 0 29 -3,-2.1 -62,-2.9 -4,-0.3 -61,-0.4 -0.735 360.0 360.0 -85.9 96.7 -1.0 26.5 34.4 97 99 A Q 0 0 123 -2,-1.2 -64,-0.1 -64,-0.3 -2,-0.1 -0.744 360.0 360.0-131.8 360.0 -1.4 27.4 38.1