==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-MAY-04 1WG4 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN (RIKEN CDNA 6030486K23); . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7004.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 23.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 137.6 7.0 4.8 -16.0 2 2 A S - 0 0 121 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.300 360.0-162.9-152.7 -56.9 9.8 5.2 -13.5 3 3 A S + 0 0 128 1,-0.1 2,-0.2 0, 0.0 0, 0.0 0.648 12.0 174.4 62.8 131.7 9.9 8.6 -11.9 4 4 A G + 0 0 73 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.614 8.8 148.4-173.2 106.3 13.1 9.8 -10.1 5 5 A S - 0 0 109 -2,-0.2 0, 0.0 1,-0.2 0, 0.0 -0.974 44.0-131.8-142.6 154.4 13.8 13.2 -8.6 6 6 A S S S+ 0 0 131 -2,-0.3 -1,-0.2 1,-0.0 0, 0.0 0.977 104.0 44.0 -68.0 -58.5 15.8 14.6 -5.7 7 7 A G S S+ 0 0 71 1,-0.0 -2,-0.0 2,-0.0 -1,-0.0 0.958 70.6 172.6 -48.7 -86.0 13.0 16.8 -4.3 8 8 A G - 0 0 57 -4,-0.0 -1,-0.0 2,-0.0 -2,-0.0 0.997 19.1-161.8 68.5 68.7 10.0 14.5 -4.4 9 9 A P - 0 0 97 0, 0.0 2,-2.3 0, 0.0 -1,-0.0 -0.174 37.5 -79.4 -75.0 172.2 7.4 16.6 -2.5 10 10 A P + 0 0 99 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.488 68.4 167.8 -75.0 76.6 4.2 15.3 -1.0 11 11 A T - 0 0 75 -2,-2.3 2,-0.6 1,-0.0 3,-0.1 -0.658 31.1-147.0 -93.7 149.3 2.3 15.2 -4.2 12 12 A R - 0 0 157 -2,-0.3 32,-0.0 1,-0.1 -1,-0.0 -0.805 13.4-178.0-119.1 87.9 -1.1 13.5 -4.7 13 13 A R S S+ 0 0 195 -2,-0.6 2,-0.3 30,-0.1 -1,-0.1 0.759 79.3 13.0 -53.4 -25.6 -1.4 12.1 -8.2 14 14 A S - 0 0 22 -3,-0.1 44,-0.1 1,-0.1 3,-0.1 -0.867 62.1-139.6-143.3 174.8 -4.8 11.0 -7.1 15 15 A D S S+ 0 0 121 -2,-0.3 2,-0.9 42,-0.2 -1,-0.1 0.756 84.0 79.3-105.8 -41.4 -7.3 11.5 -4.3 16 16 A F + 0 0 65 41,-0.3 41,-3.1 73,-0.1 2,-0.2 -0.619 64.6 150.1 -75.5 104.9 -8.6 8.0 -3.8 17 17 A R E -A 56 0A 34 -2,-0.9 2,-0.4 39,-0.3 39,-0.3 -0.711 39.2-130.9-127.6 178.1 -6.0 6.2 -1.8 18 18 A V E -A 55 0A 0 37,-2.5 37,-1.3 -2,-0.2 2,-0.5 -0.981 14.5-139.0-139.1 123.1 -5.7 3.4 0.8 19 19 A L E -AB 54 88A 25 69,-3.6 69,-1.7 -2,-0.4 2,-0.5 -0.692 19.1-162.2 -83.6 126.5 -4.0 3.6 4.1 20 20 A V E +AB 53 87A 0 33,-1.8 33,-3.0 -2,-0.5 2,-0.3 -0.944 13.4 171.8-114.0 128.2 -2.0 0.5 4.9 21 21 A S E +AB 52 86A 36 65,-0.9 65,-1.8 -2,-0.5 31,-0.3 -0.975 51.5 48.9-135.8 148.4 -0.9 -0.3 8.5 22 22 A G + 0 0 38 29,-2.5 30,-0.2 -2,-0.3 -1,-0.1 0.745 69.2 165.5 95.4 31.0 0.6 -3.3 10.2 23 23 A L - 0 0 10 28,-3.0 -1,-0.2 -3,-0.2 61,-0.1 -0.387 37.9-102.5 -77.3 157.6 3.4 -3.8 7.6 24 24 A P - 0 0 9 0, 0.0 -1,-0.1 0, 0.0 59,-0.1 -0.206 26.4-110.9 -75.0 169.6 6.4 -6.1 8.4 25 25 A P S S+ 0 0 117 0, 0.0 26,-0.1 0, 0.0 25,-0.1 0.622 123.6 37.1 -75.0 -13.9 9.9 -4.9 9.3 26 26 A S S S+ 0 0 23 2,-0.1 52,-0.8 56,-0.0 54,-0.1 0.469 90.8 123.9-111.8 -10.3 11.0 -6.2 5.9 27 27 A G - 0 0 18 50,-0.2 2,-0.2 51,-0.1 50,-0.1 -0.130 42.2-165.5 -52.5 147.7 7.9 -5.2 4.0 28 28 A S > - 0 0 23 1,-0.1 4,-0.7 18,-0.0 20,-0.1 -0.671 32.4-117.7-127.6-177.9 8.4 -2.9 1.0 29 29 A W H > S+ 0 0 110 -2,-0.2 4,-3.5 3,-0.2 5,-0.2 0.752 108.2 62.2 -92.2 -31.1 6.4 -0.7 -1.3 30 30 A Q H > S+ 0 0 116 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.982 112.9 32.6 -56.8 -64.1 7.3 -2.7 -4.3 31 31 A D H > S+ 0 0 59 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.902 117.9 57.6 -60.1 -43.1 5.7 -5.9 -3.1 32 32 A L H X S+ 0 0 0 -4,-0.7 4,-3.8 2,-0.2 3,-0.4 0.932 109.1 45.1 -52.3 -51.2 3.0 -3.9 -1.3 33 33 A K H X S+ 0 0 43 -4,-3.5 4,-4.4 1,-0.3 5,-0.3 0.978 106.7 56.0 -56.2 -62.2 2.1 -2.2 -4.6 34 34 A D H < S+ 0 0 104 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.769 117.0 41.8 -41.3 -28.5 2.0 -5.5 -6.6 35 35 A H H >< S+ 0 0 49 -4,-1.5 3,-2.8 -3,-0.4 -2,-0.3 0.950 114.9 44.8 -83.9 -61.3 -0.4 -6.5 -3.9 36 36 A M H >< S+ 0 0 0 -4,-3.8 3,-2.5 1,-0.3 4,-0.2 0.854 96.7 76.9 -50.6 -39.5 -2.5 -3.3 -3.5 37 37 A R T 3< + 0 0 111 -4,-4.4 -1,-0.3 1,-0.3 -2,-0.1 0.739 64.7 99.5 -43.9 -24.8 -2.6 -3.1 -7.3 38 38 A E T < S+ 0 0 111 -3,-2.8 -1,-0.3 -5,-0.3 -2,-0.2 0.789 83.3 49.2 -31.7 -40.6 -5.2 -5.9 -6.8 39 39 A A S < S- 0 0 17 -3,-2.5 -1,-0.2 -4,-0.1 -2,-0.2 0.989 126.8 -70.5 -64.8 -81.9 -7.7 -3.0 -7.3 40 40 A G S S- 0 0 29 -4,-0.2 2,-0.4 19,-0.1 -1,-0.1 -0.114 84.9 -15.5-142.1-119.0 -6.4 -1.3 -10.4 41 41 A D - 0 0 88 -2,-0.1 17,-0.7 -3,-0.1 2,-0.6 -0.880 53.5-143.3-106.8 134.6 -3.4 0.8 -11.2 42 42 A V E +C 57 0A 6 -2,-0.4 15,-0.2 15,-0.2 3,-0.1 -0.869 21.5 173.6-100.4 119.2 -1.3 2.4 -8.5 43 43 A C E S+ 0 0 44 13,-2.2 2,-0.4 -2,-0.6 -1,-0.2 0.695 75.0 39.1 -92.3 -24.9 0.0 5.8 -9.3 44 44 A Y E +C 56 0A 57 12,-1.1 12,-1.7 -32,-0.0 2,-0.3 -0.991 60.4 166.8-131.2 136.6 1.5 6.2 -5.8 45 45 A A E +C 55 0A 21 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.867 11.4 153.4-152.2 111.9 3.2 3.7 -3.6 46 46 A D E -C 54 0A 81 8,-2.4 8,-2.4 -2,-0.3 2,-0.3 -0.968 17.9-165.7-139.3 153.2 5.2 4.6 -0.5 47 47 A V E -C 53 0A 35 -2,-0.3 2,-0.3 6,-0.2 6,-0.2 -0.996 4.0-166.6-141.8 143.8 6.1 2.8 2.7 48 48 A Q E > -C 52 0A 116 4,-2.0 4,-1.0 -2,-0.3 3,-0.4 -0.765 31.6 -86.3-124.8 170.3 7.4 3.9 6.1 49 49 A K T >4 S+ 0 0 180 -2,-0.3 2,-3.2 1,-0.2 3,-1.1 0.167 103.6 48.4 -61.0-172.0 9.0 2.3 9.1 50 50 A D T 34 S- 0 0 163 1,-0.2 -1,-0.2 -28,-0.1 -29,-0.0 -0.322 130.2 -68.8 73.5 -59.7 6.8 1.0 12.0 51 51 A G T 34 S+ 0 0 5 -2,-3.2 -28,-3.0 -3,-0.4 -29,-2.5 0.480 91.0 130.5 141.0 45.2 4.7 -0.8 9.5 52 52 A M E << +AC 21 48A 40 -3,-1.1 -4,-2.0 -4,-1.0 2,-0.3 -0.809 24.7 174.7-119.8 161.0 2.7 1.7 7.5 53 53 A G E -AC 20 47A 5 -33,-3.0 -33,-1.8 -2,-0.3 2,-0.3 -0.936 15.4-148.2-154.5 173.3 2.1 2.3 3.8 54 54 A M E +AC 19 46A 30 -8,-2.4 -8,-2.4 -2,-0.3 2,-0.4 -0.960 11.9 177.8-155.1 133.5 0.2 4.4 1.2 55 55 A V E -AC 18 45A 0 -37,-1.3 -37,-2.5 -2,-0.3 2,-0.4 -0.997 11.4-156.2-139.2 141.2 -1.2 3.7 -2.2 56 56 A E E -AC 17 44A 1 -12,-1.7 -13,-2.2 -2,-0.4 -12,-1.1 -0.963 9.1-156.8-121.4 135.2 -3.2 5.9 -4.6 57 57 A Y E - C 0 42A 0 -41,-3.1 -41,-0.3 -2,-0.4 -42,-0.2 -0.577 21.1-137.0-104.5 168.7 -5.5 4.7 -7.3 58 58 A L S S+ 0 0 83 -17,-0.7 2,-0.4 -2,-0.2 -16,-0.1 0.605 90.9 53.1 -96.8 -17.7 -6.7 6.3 -10.5 59 59 A R S > S- 0 0 172 -18,-0.2 4,-1.3 1,-0.1 -2,-0.1 -0.928 73.3-139.4-122.1 145.5 -10.3 5.1 -10.0 60 60 A K H >> S+ 0 0 116 -2,-0.4 4,-1.6 2,-0.2 3,-0.8 0.966 104.6 55.1 -63.3 -55.1 -12.6 5.4 -7.0 61 61 A E H 3> S+ 0 0 146 1,-0.3 4,-4.8 2,-0.2 5,-0.2 0.892 101.2 60.0 -43.2 -50.9 -13.9 1.9 -7.2 62 62 A D H 3> S+ 0 0 27 2,-0.2 4,-3.3 1,-0.2 5,-0.4 0.904 105.2 49.9 -44.1 -51.8 -10.4 0.6 -7.1 63 63 A M H S+ 0 0 0 -4,-3.3 4,-2.1 1,-0.2 5,-1.1 0.868 114.2 62.7 -57.8 -38.1 -9.1 -3.0 -2.7 67 67 A L H X5S+ 0 0 4 -4,-3.4 4,-1.8 -5,-0.4 20,-0.3 0.953 119.5 22.8 -50.9 -58.1 -10.3 -1.5 0.5 68 68 A R H <5S+ 0 0 148 -4,-3.3 -2,-0.2 2,-0.2 -3,-0.2 0.989 124.8 50.6 -72.9 -66.3 -12.9 -4.2 1.0 69 69 A K H <5S+ 0 0 134 -4,-2.7 -3,-0.2 -5,-0.3 -2,-0.2 0.885 126.8 28.5 -35.6 -61.1 -11.4 -7.0 -1.1 70 70 A L H <5S+ 0 0 9 -4,-2.1 -3,-0.2 -5,-0.4 -1,-0.2 0.988 80.7 145.5 -66.2 -62.1 -8.1 -6.6 0.6 71 71 A D S < - 0 0 5 4,-2.8 3,-1.2 -2,-0.6 -50,-0.2 -0.075 30.9-101.3 -72.9 178.5 7.7 -9.1 2.7 78 78 A H T 3 S+ 0 0 138 -52,-0.8 -1,-0.1 1,-0.3 -51,-0.1 0.525 123.8 59.5 -79.1 -6.6 10.8 -9.4 0.5 79 79 A E T 3 S- 0 0 131 2,-0.1 2,-0.5 0, 0.0 -1,-0.3 0.193 119.5-109.5-104.3 12.7 12.3 -11.4 3.4 80 80 A G S < S+ 0 0 31 -3,-1.2 -3,-0.1 1,-0.3 -2,-0.1 -0.188 81.8 125.0 87.8 -41.6 9.6 -14.0 3.2 81 81 A E - 0 0 92 -2,-0.5 -4,-2.8 -5,-0.2 2,-0.3 0.118 46.7-151.4 -43.5 165.2 8.1 -12.8 6.5 82 82 A T E -D 76 0B 54 -6,-0.3 2,-0.3 -3,-0.1 -6,-0.2 -0.917 15.1-176.7-141.5 165.9 4.5 -11.8 6.5 83 83 A S E -D 75 0B 32 -8,-1.5 -8,-2.4 -2,-0.3 2,-0.9 -0.977 34.0-104.8-162.4 153.8 2.1 -9.4 8.4 84 84 A Y E -D 74 0B 136 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.2 -0.766 38.5-174.8 -89.3 106.8 -1.5 -8.5 8.6 85 85 A I E -D 73 0B 0 -12,-1.8 -12,-2.0 -2,-0.9 2,-0.2 -0.892 13.2-143.9-105.9 129.6 -2.0 -5.1 6.9 86 86 A R E -B 21 0A 124 -65,-1.8 -65,-0.9 -2,-0.5 2,-0.6 -0.601 5.5-141.1 -90.9 152.0 -5.4 -3.4 6.9 87 87 A V E +B 20 0A 5 -20,-0.3 -67,-0.2 -2,-0.2 -16,-0.1 -0.953 37.0 144.9-118.2 113.4 -6.9 -1.5 4.1 88 88 A Y E -B 19 0A 65 -69,-1.7 -69,-3.6 -2,-0.6 -24,-0.0 -0.963 43.7-104.4-144.9 159.6 -8.8 1.7 5.0 89 89 A P - 0 0 51 0, 0.0 2,-0.6 0, 0.0 -71,-0.1 -0.097 41.3 -97.7 -75.1 178.1 -9.5 5.2 3.6 90 90 A E - 0 0 89 -73,-0.2 2,-0.3 2,-0.0 -73,-0.1 -0.901 41.9-179.2-105.7 122.3 -8.0 8.4 5.0 91 91 A R + 0 0 197 -2,-0.6 2,-0.1 3,-0.0 0, 0.0 -0.886 14.4 154.7-120.6 151.4 -10.0 10.5 7.4 92 92 A S S S- 0 0 95 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.455 74.6 -41.0-177.2 95.3 -9.3 13.7 9.1 93 93 A S S S- 0 0 132 -2,-0.1 -2,-0.0 1,-0.1 0, 0.0 0.926 76.0-140.4 40.3 79.6 -12.0 16.1 10.3 94 94 A G - 0 0 62 1,-0.1 3,-0.1 2,-0.0 -1,-0.1 -0.195 7.5-128.9 -65.0 159.1 -14.3 15.8 7.3 95 95 A P + 0 0 120 0, 0.0 2,-3.4 0, 0.0 -1,-0.1 0.920 32.9 173.7 -75.0 -47.3 -16.1 18.8 5.9 96 96 A S S S+ 0 0 128 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.306 71.4 4.0 71.7 -59.6 -19.6 17.3 5.9 97 97 A S 0 0 104 -2,-3.4 0, 0.0 -3,-0.1 0, 0.0 -0.928 360.0 360.0-159.6 131.4 -21.1 20.6 4.9 98 98 A G 0 0 133 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.818 360.0 360.0 -84.5 360.0 -19.6 24.0 4.0