==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 28-MAY-04 1WH9 . COMPND 2 MOLECULE: 40S RIBOSOMAL PROTEIN S3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.NAMEKI,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6836.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 8.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 28.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 92 0, 0.0 2,-0.3 0, 0.0 30,-0.0 0.000 360.0 360.0 360.0 169.7 -4.6 -7.8 -9.9 2 2 A S - 0 0 113 0, 0.0 2,-0.1 0, 0.0 0, 0.0 -0.978 360.0 -89.4-154.3 157.4 -7.3 -9.9 -8.2 3 3 A S S S+ 0 0 127 -2,-0.3 2,-0.3 3,-0.0 3,-0.0 -0.402 71.6 84.5 -74.7 150.7 -8.1 -11.6 -4.8 4 4 A G S S- 0 0 64 -2,-0.1 2,-0.1 0, 0.0 0, 0.0 -0.966 84.4 -12.3 156.7-161.8 -7.0 -15.2 -4.0 5 5 A S S S+ 0 0 124 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.427 73.2 121.1 -55.4 143.9 -3.8 -16.9 -2.6 6 6 A S - 0 0 98 -2,-0.1 2,-1.3 -3,-0.0 3,-0.4 0.254 47.0-153.7 174.4 -8.7 -0.7 -14.5 -2.5 7 7 A G S >> S+ 0 0 55 1,-0.3 3,-1.5 2,-0.1 4,-1.2 -0.470 81.9 55.5 74.0 -91.2 0.5 -14.2 1.1 8 8 A F H 3> S+ 0 0 54 -2,-1.3 4,-2.7 1,-0.3 5,-0.3 0.820 99.5 60.3 -45.4 -49.8 2.2 -10.8 1.3 9 9 A K H 3> S+ 0 0 52 -3,-0.4 4,-1.8 1,-0.2 -1,-0.3 0.791 104.6 50.1 -57.9 -31.7 -0.8 -8.8 0.1 10 10 A A H <> S+ 0 0 67 -3,-1.5 4,-2.2 2,-0.2 -1,-0.2 0.905 113.0 44.6 -74.7 -42.3 -3.0 -10.0 3.0 11 11 A E H X S+ 0 0 102 -4,-1.2 4,-2.3 -3,-0.2 -2,-0.2 0.904 115.7 47.9 -62.7 -46.4 -0.3 -9.1 5.7 12 12 A L H X S+ 0 0 0 -4,-2.7 4,-2.9 2,-0.2 5,-0.2 0.876 111.4 50.0 -65.8 -38.8 0.4 -5.7 4.0 13 13 A N H X S+ 0 0 57 -4,-1.8 4,-2.2 -5,-0.3 -2,-0.2 0.914 110.9 49.5 -67.4 -42.2 -3.4 -4.9 3.7 14 14 A E H X S+ 0 0 124 -4,-2.2 4,-1.1 2,-0.2 -2,-0.2 0.900 114.4 46.9 -55.9 -46.3 -3.8 -5.8 7.5 15 15 A F H >X S+ 0 0 22 -4,-2.3 4,-1.8 1,-0.2 3,-0.9 0.982 114.4 43.9 -59.6 -61.6 -0.8 -3.5 8.2 16 16 A L H 3X S+ 0 0 1 -4,-2.9 4,-2.4 1,-0.3 -2,-0.2 0.779 102.5 67.2 -61.5 -32.2 -2.0 -0.6 6.1 17 17 A T H 3< S+ 0 0 44 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.912 109.1 38.5 -54.6 -45.4 -5.6 -0.8 7.3 18 18 A R H X< S+ 0 0 162 -4,-1.1 3,-1.4 -3,-0.9 4,-0.2 0.931 115.3 53.1 -66.4 -50.0 -4.3 0.2 10.8 19 19 A E H 3< S+ 0 0 90 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.810 122.3 28.6 -55.9 -35.5 -1.8 2.8 9.4 20 20 A L T 3X>S+ 0 0 1 -4,-2.4 5,-1.7 1,-0.1 4,-1.6 -0.077 81.1 130.7-121.1 24.8 -4.4 4.6 7.3 21 21 A A T <45S+ 0 0 73 -3,-1.4 3,-0.3 1,-0.2 4,-0.2 0.927 86.5 22.0 -51.0 -63.0 -7.5 3.9 9.4 22 22 A E T 45S+ 0 0 182 -4,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.780 111.5 76.1 -77.2 -24.9 -8.8 7.5 9.6 23 23 A D T 45S- 0 0 28 1,-0.1 22,-0.3 -4,-0.1 -2,-0.2 0.815 116.8 -98.6 -58.7 -35.5 -6.9 8.7 6.4 24 24 A G T <5 + 0 0 15 -4,-1.6 20,-2.6 -3,-0.3 -3,-0.2 0.667 56.8 176.2 120.7 35.7 -9.4 6.9 4.2 25 25 A Y E < +A 43 0A 30 -5,-1.7 18,-0.2 18,-0.2 19,-0.1 -0.069 16.8 164.4 -59.4 167.5 -7.9 3.5 3.3 26 26 A S E - 0 0 84 16,-0.9 2,-0.3 1,-0.4 17,-0.2 0.311 59.3 -55.8-148.1 -44.9 -9.7 0.8 1.2 27 27 A G E -A 42 0A 11 15,-1.4 15,-3.0 -11,-0.1 -1,-0.4 -0.947 47.4-111.4 176.3-169.5 -7.1 -1.7 0.0 28 28 A V E -A 41 0A 5 13,-0.3 2,-0.3 -2,-0.3 13,-0.3 -0.951 10.4-145.5-145.8 156.3 -3.8 -2.0 -1.9 29 29 A E E -A 40 0A 50 11,-2.3 11,-2.9 -2,-0.3 2,-0.3 -0.873 17.6-163.1-116.4 159.0 -2.6 -3.5 -5.2 30 30 A V E -A 39 0A 35 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.974 9.5-173.4-138.0 150.1 0.9 -5.0 -5.7 31 31 A R E -A 38 0A 161 7,-2.1 7,-2.6 -2,-0.3 2,-0.4 -0.959 8.2-160.5-132.9 156.8 3.1 -5.9 -8.7 32 32 A V E +A 37 0A 117 -2,-0.3 5,-0.2 5,-0.2 -2,-0.0 -0.985 22.7 174.5-136.5 124.1 6.3 -7.8 -8.8 33 33 A T - 0 0 45 3,-2.4 -2,-0.0 -2,-0.4 0, 0.0 -0.582 51.1 -95.3-120.4 176.8 8.4 -7.3 -11.9 34 34 A P S S+ 0 0 136 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 0.334 126.8 41.0 -72.1 8.1 11.9 -8.2 -13.2 35 35 A T S S- 0 0 82 1,-0.5 2,-0.3 39,-0.0 -3,-0.0 0.700 124.3 -33.0-125.8 -45.1 12.9 -4.8 -11.8 36 36 A R - 0 0 99 40,-0.0 -3,-2.4 2,-0.0 -1,-0.5 -0.964 57.8 -91.6-161.7 173.2 11.2 -4.2 -8.4 37 37 A T E -Ab 32 75A 25 37,-2.7 39,-1.3 -2,-0.3 2,-0.4 -0.779 39.1-154.6 -88.9 149.5 8.1 -4.8 -6.3 38 38 A E E -Ab 31 76A 33 -7,-2.6 -7,-2.1 -2,-0.3 2,-0.4 -0.976 7.4-165.2-128.2 138.4 5.4 -2.1 -6.5 39 39 A I E -Ab 30 77A 3 37,-2.0 39,-2.9 -2,-0.4 2,-0.5 -0.997 5.4-176.0-132.2 120.7 2.9 -1.3 -3.8 40 40 A I E -Ab 29 78A 27 -11,-2.9 -11,-2.3 -2,-0.4 39,-0.2 -0.904 11.3-155.1-127.4 95.0 -0.2 0.9 -4.7 41 41 A I E -Ab 28 79A 5 37,-1.8 39,-3.3 -2,-0.5 2,-0.5 -0.386 8.4-142.8 -64.3 153.2 -2.6 1.8 -1.9 42 42 A L E +Ab 27 80A 54 -15,-3.0 -15,-1.4 37,-0.2 -16,-0.9 -0.981 36.4 155.6-118.8 108.1 -6.2 2.6 -2.8 43 43 A A E -Ab 25 81A 1 37,-1.9 39,-1.2 -2,-0.5 3,-0.4 -0.961 52.5-123.3-138.9 157.9 -7.6 5.5 -0.6 44 44 A T S S+ 0 0 70 -20,-2.6 2,-0.4 -2,-0.3 -20,-0.1 0.840 108.4 31.9 -64.1 -34.2 -10.2 8.2 -0.6 45 45 A R >> - 0 0 157 -22,-0.3 4,-1.4 -21,-0.1 3,-1.2 -0.793 63.8-176.4-134.9 82.6 -7.7 11.0 -0.1 46 46 A T H 3> S+ 0 0 40 -2,-0.4 4,-2.0 -3,-0.4 5,-0.2 0.841 82.3 63.5 -53.4 -35.4 -4.2 10.3 -1.6 47 47 A Q H 3> S+ 0 0 126 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.856 102.9 48.2 -60.8 -36.6 -2.7 13.6 -0.2 48 48 A N H <4 S+ 0 0 81 -3,-1.2 -1,-0.2 2,-0.2 -2,-0.2 0.944 111.0 50.4 -67.0 -45.3 -3.3 12.4 3.4 49 49 A V H < S+ 0 0 5 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.779 115.6 43.5 -64.3 -30.2 -1.7 9.0 2.6 50 50 A L H < S- 0 0 52 -4,-2.0 7,-1.6 6,-0.2 6,-0.9 0.867 100.4-160.3 -76.2 -40.2 1.3 10.9 1.1 51 51 A G >< - 0 0 10 -4,-2.4 3,-2.0 4,-0.2 2,-0.2 -0.158 49.1 -15.1 76.3 179.7 1.5 13.4 4.0 52 52 A E G > S- 0 0 156 1,-0.3 3,-1.8 2,-0.2 -4,-0.0 -0.363 137.7 -23.4 -57.1 114.9 3.2 16.8 3.8 53 53 A K G 3 S- 0 0 200 1,-0.3 -1,-0.3 -2,-0.2 -2,-0.1 0.817 131.3 -46.0 39.5 46.8 5.3 16.7 0.7 54 54 A G G <> S+ 0 0 21 -3,-2.0 4,-2.4 -7,-0.2 -1,-0.3 0.562 97.5 139.6 85.9 9.5 5.5 12.9 0.8 55 55 A R H <> S+ 0 0 173 -3,-1.8 4,-2.4 1,-0.2 -4,-0.2 0.916 73.3 40.5 -43.9 -62.4 6.2 12.6 4.6 56 56 A R H > S+ 0 0 140 -6,-0.9 4,-3.2 1,-0.2 -5,-0.2 0.893 114.4 51.3 -69.0 -40.8 4.0 9.6 5.4 57 57 A I H > S+ 0 0 29 -7,-1.6 4,-2.3 2,-0.2 -1,-0.2 0.917 110.7 49.9 -63.0 -41.3 4.7 7.6 2.2 58 58 A R H X S+ 0 0 126 -4,-2.4 4,-1.9 -8,-0.4 -2,-0.2 0.967 115.4 42.7 -60.0 -52.6 8.5 8.0 2.9 59 59 A E H X S+ 0 0 133 -4,-2.4 4,-2.5 1,-0.2 5,-0.2 0.925 112.8 52.6 -58.5 -47.1 8.1 6.8 6.5 60 60 A L H X S+ 0 0 14 -4,-3.2 4,-2.2 1,-0.2 -1,-0.2 0.828 106.5 55.4 -62.0 -30.2 5.6 4.0 5.4 61 61 A T H X S+ 0 0 22 -4,-2.3 4,-3.0 -5,-0.2 -1,-0.2 0.961 109.9 45.4 -61.2 -51.7 8.3 2.9 2.9 62 62 A A H X S+ 0 0 45 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.916 114.1 46.7 -62.2 -48.7 10.9 2.6 5.7 63 63 A V H X S+ 0 0 44 -4,-2.5 4,-3.1 2,-0.2 5,-0.2 0.945 115.3 46.9 -59.9 -46.2 8.6 0.7 8.1 64 64 A V H X>S+ 0 0 2 -4,-2.2 4,-3.1 2,-0.2 5,-0.6 0.929 109.9 54.2 -60.4 -45.7 7.5 -1.7 5.2 65 65 A Q H X5S+ 0 0 28 -4,-3.0 4,-1.4 1,-0.2 5,-0.3 0.908 115.5 40.0 -51.9 -44.3 11.2 -2.1 4.3 66 66 A K H <5S+ 0 0 186 -4,-2.4 -2,-0.2 3,-0.2 -1,-0.2 0.940 118.8 45.1 -70.8 -50.8 11.8 -3.2 7.9 67 67 A R H <5S+ 0 0 152 -4,-3.1 -2,-0.2 1,-0.2 -3,-0.2 0.886 127.6 26.6 -64.1 -44.9 8.7 -5.3 8.4 68 68 A F H <5S- 0 0 57 -4,-3.1 -1,-0.2 -5,-0.2 -3,-0.2 0.594 103.8-121.8-103.6 -13.7 8.8 -7.2 5.1 69 69 A G << + 0 0 58 -4,-1.4 -3,-0.2 -5,-0.6 -4,-0.2 0.699 44.2 177.9 86.3 20.4 12.6 -7.0 4.5 70 70 A F - 0 0 31 -6,-0.4 2,-0.2 -5,-0.3 -1,-0.2 -0.288 30.7-119.7 -62.3 138.4 12.5 -5.2 1.1 71 71 A P > - 0 0 83 0, 0.0 3,-1.2 0, 0.0 4,-0.2 -0.537 38.6-106.4 -69.0 141.6 15.7 -4.3 -0.7 72 72 A E T 3 S+ 0 0 137 1,-0.2 4,-0.1 -2,-0.2 0, 0.0 -0.391 104.9 21.4 -75.5 147.4 15.9 -0.5 -1.2 73 73 A G T 3 S+ 0 0 58 2,-0.4 -1,-0.2 -2,-0.1 3,-0.1 0.331 116.0 75.8 72.0 -7.4 15.3 0.8 -4.8 74 74 A S S < S+ 0 0 44 -3,-1.2 -37,-2.7 -38,-0.1 2,-0.4 0.271 86.1 61.3-122.0 7.2 13.5 -2.5 -5.3 75 75 A V E -b 37 0A 9 -39,-0.2 -2,-0.4 -4,-0.2 2,-0.4 -0.990 67.3-173.0-121.1 136.8 10.4 -1.6 -3.4 76 76 A E E -b 38 0A 78 -39,-1.3 -37,-2.0 -2,-0.4 2,-0.4 -0.992 9.3-153.1-127.7 140.8 8.3 1.3 -4.7 77 77 A L E +b 39 0A 12 -2,-0.4 2,-0.2 -39,-0.2 -37,-0.2 -0.965 20.4 167.1-120.5 126.7 5.3 2.9 -2.9 78 78 A Y E -b 40 0A 72 -39,-2.9 -37,-1.8 -2,-0.4 2,-0.4 -0.784 24.7-137.9-129.9 168.2 2.5 4.6 -4.8 79 79 A A E -b 41 0A 33 -2,-0.2 2,-0.3 -39,-0.2 -37,-0.2 -0.976 14.0-169.2-138.6 122.1 -1.0 5.9 -4.0 80 80 A E E -b 42 0A 103 -39,-3.3 -37,-1.9 -2,-0.4 2,-0.3 -0.760 21.3-125.4-103.4 155.3 -4.1 5.5 -6.2 81 81 A K E -b 43 0A 115 -2,-0.3 2,-0.2 -39,-0.2 -37,-0.2 -0.732 24.8-109.8-101.2 149.5 -7.4 7.3 -5.6 82 82 A V + 0 0 71 -39,-1.2 2,-0.3 -2,-0.3 -36,-0.1 -0.562 45.4 160.2 -81.8 144.2 -10.7 5.5 -5.4 83 83 A A - 0 0 80 -2,-0.2 2,-0.1 0, 0.0 -39,-0.0 -0.949 37.2-107.3-164.6 139.5 -13.2 6.0 -8.2 84 84 A T - 0 0 117 -2,-0.3 2,-0.2 1,-0.1 0, 0.0 -0.364 27.6-117.7 -70.2 148.1 -16.2 4.1 -9.5 85 85 A R S S+ 0 0 240 -2,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.566 83.6 49.5 -65.9 155.3 -16.3 2.0 -12.6 86 86 A G + 0 0 56 1,-0.2 0, 0.0 -2,-0.2 0, 0.0 -0.524 64.7 85.4 103.3-174.8 -19.0 3.6 -14.9 87 87 A S - 0 0 120 -2,-0.2 -1,-0.2 3,-0.0 3,-0.1 0.213 68.9 -90.1 60.1 173.1 -19.6 7.2 -16.1 88 88 A G - 0 0 47 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.380 21.4-115.7-101.1 178.7 -18.0 9.0 -19.1 89 89 A P S S- 0 0 134 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.935 88.5 -60.7 -70.1 -69.5 -15.0 11.2 -19.7 90 90 A S - 0 0 94 -3,-0.1 -2,-0.1 0, 0.0 -3,-0.0 0.364 53.3-138.2-142.9 -32.4 -17.2 14.1 -20.7 91 91 A S 0 0 118 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.456 360.0 360.0 70.8 6.7 -19.2 12.8 -23.7 92 92 A G 0 0 107 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.140 360.0 360.0-161.3 360.0 -18.6 16.3 -25.2