==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTITUMOR PROTEIN 28-MAY-04 1WHL . COMPND 2 MOLECULE: CYLINDROMATOSIS TUMOR SUPPRESSOR CYLD; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6695.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 26.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 5,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 100.0 21.2 7.3 5.3 2 2 A S + 0 0 121 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.498 360.0 133.9-135.0 65.0 20.5 6.4 1.7 3 3 A S S S- 0 0 128 -2,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.800 85.9 -81.6 -82.0 -31.5 22.7 3.5 0.8 4 4 A G S S+ 0 0 70 -3,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.606 105.6 85.6 131.0 43.1 19.9 1.6 -1.0 5 5 A S + 0 0 105 2,-0.0 -3,-0.1 0, 0.0 0, 0.0 0.585 44.8 157.4-127.1 -67.1 17.8 -0.2 1.5 6 6 A S - 0 0 89 -5,-0.2 2,-0.1 1,-0.1 -4,-0.0 0.004 24.0-151.5 60.2-172.9 15.0 2.0 3.0 7 7 A G - 0 0 52 75,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.231 7.1-162.1 162.0 103.6 11.9 0.4 4.6 8 8 A I + 0 0 12 -2,-0.1 2,-0.2 79,-0.0 74,-0.1 -0.824 20.4 162.7-102.1 137.1 8.3 1.8 4.9 9 9 A D - 0 0 101 -2,-0.4 3,-0.4 20,-0.0 20,-0.3 -0.812 47.4 -53.2-140.0 179.6 5.8 0.3 7.3 10 10 A V S S+ 0 0 74 -2,-0.2 20,-0.2 1,-0.2 38,-0.1 -0.358 120.1 28.0 -60.3 129.2 2.5 1.0 9.1 11 11 A G S S+ 0 0 51 18,-2.5 -1,-0.2 1,-0.3 19,-0.1 0.888 93.3 118.6 86.3 43.9 2.7 4.4 10.9 12 12 A C - 0 0 43 -3,-0.4 17,-2.5 17,-0.1 2,-0.3 -0.998 62.4-118.7-144.2 137.0 5.3 6.2 8.7 13 13 A P E +A 28 0A 52 0, 0.0 75,-1.3 0, 0.0 2,-0.3 -0.567 42.7 157.5 -77.2 132.3 5.1 9.3 6.6 14 14 A V E -AB 27 87A 0 13,-3.1 13,-1.2 -2,-0.3 2,-0.4 -0.989 42.2-110.9-155.5 145.8 5.8 8.9 2.8 15 15 A K E -AB 26 86A 75 71,-1.7 71,-0.6 -2,-0.3 2,-0.5 -0.650 31.2-157.4 -81.3 127.4 5.0 10.7 -0.4 16 16 A V E -AB 25 85A 0 9,-3.5 9,-2.7 -2,-0.4 2,-0.7 -0.905 6.8-144.4-110.0 131.0 2.6 8.9 -2.7 17 17 A Q E +A 24 0A 58 67,-0.8 7,-0.2 -2,-0.5 -2,-0.0 -0.832 20.0 174.4 -97.0 113.6 2.4 9.5 -6.4 18 18 A L + 0 0 58 5,-0.8 -1,-0.2 -2,-0.7 2,-0.1 0.893 68.6 39.4 -82.0 -44.3 -1.1 9.3 -7.8 19 19 A R S S- 0 0 165 4,-0.4 2,-1.5 1,-0.0 3,-0.4 -0.379 106.4 -78.7 -98.3 179.3 -0.3 10.4 -11.4 20 20 A S S S- 0 0 125 1,-0.3 -1,-0.0 -2,-0.1 -2,-0.0 -0.621 105.2 -35.9 -82.4 87.8 2.6 9.5 -13.6 21 21 A G S S+ 0 0 58 -2,-1.5 -1,-0.3 2,-0.1 3,-0.1 0.966 108.2 117.0 62.4 54.9 5.3 11.8 -12.3 22 22 A E S S- 0 0 138 -3,-0.4 2,-0.2 1,-0.1 -2,-0.1 0.726 81.3 -30.2-115.4 -50.0 3.0 14.7 -11.4 23 23 A E - 0 0 122 -4,-0.2 -5,-0.8 2,-0.0 2,-0.7 -0.763 48.2-138.1-176.6 126.9 3.2 15.2 -7.7 24 24 A K E -A 17 0A 61 -2,-0.2 -7,-0.3 -7,-0.2 -9,-0.1 -0.824 20.4-149.3 -96.0 116.7 3.7 13.0 -4.7 25 25 A F E -A 16 0A 31 -9,-2.7 -9,-3.5 -2,-0.7 2,-0.1 -0.700 17.7-123.1 -86.9 131.5 1.4 13.7 -1.7 26 26 A P E +A 15 0A 12 0, 0.0 25,-3.1 0, 0.0 28,-0.4 -0.427 42.0 154.2 -73.4 145.5 2.8 13.0 1.8 27 27 A G E -AC 14 50A 0 -13,-1.2 -13,-3.1 23,-0.3 2,-0.4 -0.973 41.7-107.5-168.3 154.6 1.0 10.7 4.1 28 28 A V E -AC 13 49A 45 21,-1.0 21,-2.9 -2,-0.3 2,-0.1 -0.728 40.8-110.5 -91.7 135.5 1.3 8.3 7.0 29 29 A V E + C 0 48A 1 -17,-2.5 -18,-2.5 -2,-0.4 19,-0.3 -0.412 38.1 169.8 -65.2 132.3 1.1 4.5 6.5 30 30 A R E + 0 0 88 17,-3.3 2,-0.3 1,-0.4 18,-0.2 0.657 64.3 1.6-113.5 -30.1 -2.1 3.0 7.9 31 31 A F E - C 0 47A 73 16,-1.3 16,-2.0 -22,-0.1 -1,-0.4 -0.955 54.9-155.9-152.8 168.3 -2.0 -0.5 6.4 32 32 A R E + C 0 46A 100 -2,-0.3 14,-0.2 14,-0.3 -22,-0.1 -0.912 35.2 110.3-155.8 124.0 0.0 -2.8 4.2 33 33 A G - 0 0 12 12,-3.3 12,-0.2 -2,-0.3 36,-0.0 -0.772 55.6 -98.1 171.6 142.5 -1.0 -5.8 2.1 34 34 A P - 0 0 81 0, 0.0 10,-0.1 0, 0.0 3,-0.1 0.209 25.4-173.0 -56.7-173.2 -1.4 -7.0 -1.5 35 35 A L + 0 0 53 1,-0.4 9,-0.1 8,-0.3 2,-0.0 0.343 58.6 48.1-148.6 -61.3 -4.8 -7.1 -3.3 36 36 A L - 0 0 53 7,-0.2 -1,-0.4 5,-0.2 2,-0.2 -0.161 64.8-141.6 -83.2-178.4 -4.7 -8.7 -6.7 37 37 A A S S- 0 0 79 -3,-0.1 5,-0.1 5,-0.1 -1,-0.0 -0.690 72.5 -38.7-152.1 92.5 -3.2 -12.1 -7.7 38 38 A E S S+ 0 0 189 -2,-0.2 4,-0.1 1,-0.1 -2,-0.0 0.833 107.3 112.0 59.3 33.1 -1.4 -12.5 -11.0 39 39 A R S S- 0 0 179 2,-0.2 -1,-0.1 0, 0.0 3,-0.1 0.718 98.0 -20.6-103.9 -31.5 -4.1 -10.3 -12.6 40 40 A T S S- 0 0 120 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.435 123.0 -13.1-141.1 -61.5 -2.0 -7.2 -13.4 41 41 A V - 0 0 104 2,-0.1 2,-1.3 0, 0.0 -5,-0.2 -0.973 57.3-118.1-156.5 139.0 1.3 -6.9 -11.4 42 42 A S + 0 0 111 -2,-0.3 2,-0.3 -5,-0.1 -5,-0.1 -0.639 60.9 133.3 -80.7 94.6 2.7 -8.6 -8.3 43 43 A G - 0 0 31 -2,-1.3 2,-0.3 -7,-0.1 -8,-0.3 -0.984 55.0-120.7-149.0 134.9 3.1 -5.7 -5.9 44 44 A I - 0 0 66 -2,-0.3 38,-0.5 -10,-0.1 2,-0.3 -0.564 29.9-133.1 -75.5 130.2 2.3 -5.2 -2.2 45 45 A F - 0 0 45 -2,-0.3 -12,-3.3 -12,-0.2 2,-0.6 -0.667 13.6-154.9 -86.5 136.1 -0.1 -2.3 -1.6 46 46 A F E -CD 32 80A 12 34,-2.4 34,-1.0 -2,-0.3 2,-0.5 -0.931 11.5-138.7-115.7 111.9 0.8 0.2 1.1 47 47 A G E +CD 31 79A 0 -16,-2.0 -17,-3.3 -2,-0.6 -16,-1.3 -0.545 29.2 175.5 -71.5 119.6 -2.1 2.1 2.7 48 48 A V E -CD 29 78A 0 30,-3.7 30,-0.9 -2,-0.5 2,-0.6 -0.987 26.9-134.2-129.9 136.7 -1.1 5.7 3.3 49 49 A E E -CD 28 77A 22 -21,-2.9 -21,-1.0 -2,-0.4 28,-0.2 -0.789 28.3-121.6 -92.3 119.1 -3.3 8.6 4.6 50 50 A L E -C 27 0A 0 26,-2.6 -23,-0.3 -2,-0.6 6,-0.1 -0.317 28.7-135.6 -59.1 133.9 -2.9 11.8 2.5 51 51 A L - 0 0 73 -25,-3.1 4,-0.4 4,-0.1 3,-0.3 -0.173 36.3 -82.5 -82.7-179.9 -1.7 14.8 4.6 52 52 A E S S+ 0 0 145 1,-0.2 3,-0.4 2,-0.2 -1,-0.1 0.798 129.0 61.1 -53.7 -29.5 -3.1 18.3 4.6 53 53 A E S S+ 0 0 144 1,-0.2 -1,-0.2 -27,-0.1 -26,-0.1 0.967 123.6 15.8 -63.3 -55.0 -0.8 18.9 1.5 54 54 A G S S+ 0 0 2 -28,-0.4 3,-0.3 -3,-0.3 -1,-0.2 -0.065 91.7 148.8-110.9 32.2 -2.5 16.3 -0.6 55 55 A R + 0 0 125 -3,-0.4 21,-0.2 -4,-0.4 -4,-0.1 -0.446 57.2 38.7 -68.7 135.6 -5.7 15.9 1.5 56 56 A G S S+ 0 0 34 19,-1.6 20,-0.2 -2,-0.2 -1,-0.2 0.820 84.1 101.3 94.0 37.3 -8.8 15.0 -0.5 57 57 A Q + 0 0 100 18,-1.5 2,-0.3 -3,-0.3 19,-0.2 -0.058 47.0 123.1-140.9 33.3 -7.3 12.6 -3.1 58 58 A G + 0 0 4 17,-0.3 20,-0.2 1,-0.1 19,-0.1 -0.772 29.3 175.5-102.5 145.7 -8.2 9.2 -1.7 59 59 A F S S+ 0 0 116 18,-0.7 -1,-0.1 -2,-0.3 19,-0.1 0.773 81.9 45.1-109.9 -50.6 -10.2 6.5 -3.6 60 60 A T S > S- 0 0 7 17,-0.4 3,-2.1 1,-0.1 18,-0.2 0.899 79.1-163.5 -62.8 -41.8 -10.2 3.5 -1.3 61 61 A D T 3 S- 0 0 54 16,-1.1 11,-0.5 1,-0.3 17,-0.1 0.812 75.8 -50.1 60.0 30.5 -11.1 5.7 1.7 62 62 A G T 3 S+ 0 0 0 1,-0.2 8,-1.9 9,-0.2 7,-0.7 0.187 129.4 88.6 94.3 -17.3 -10.0 2.8 4.0 63 63 A V E < -E 68 0B 45 -3,-2.1 2,-0.5 5,-0.3 5,-0.3 -0.939 53.7-169.0-119.1 138.8 -12.2 0.3 2.1 64 64 A Y E > S-E 67 0B 59 3,-3.0 3,-1.8 -2,-0.4 -4,-0.1 -0.938 76.4 -24.0-130.1 110.0 -11.2 -1.8 -1.0 65 65 A Q T 3 S- 0 0 168 -2,-0.5 3,-0.1 1,-0.3 -1,-0.1 0.796 128.5 -49.8 61.8 28.7 -13.9 -3.7 -2.9 66 66 A G T 3 S+ 0 0 67 1,-0.2 2,-0.7 0, 0.0 -1,-0.3 0.018 115.5 116.7 100.0 -27.8 -16.0 -3.7 0.2 67 67 A K E < -E 64 0B 154 -3,-1.8 -3,-3.0 1,-0.1 2,-1.4 -0.668 60.8-143.8 -80.3 114.7 -13.2 -5.0 2.4 68 68 A Q E +E 63 0B 115 -2,-0.7 -5,-0.3 -5,-0.3 3,-0.1 -0.635 29.1 167.3 -81.4 92.1 -12.4 -2.3 5.1 69 69 A L - 0 0 43 -2,-1.4 2,-0.3 -7,-0.7 -1,-0.2 0.928 66.6 -5.9 -70.5 -46.6 -8.6 -2.7 5.4 70 70 A F - 0 0 15 -8,-1.9 2,-0.5 -3,-0.2 -1,-0.2 -0.917 69.4-113.0-144.2 169.0 -8.1 0.5 7.4 71 71 A Q + 0 0 150 -2,-0.3 2,-0.3 -41,-0.1 -9,-0.2 -0.921 43.3 147.6-111.8 130.1 -10.0 3.5 8.6 72 72 A C - 0 0 16 -11,-0.5 3,-0.1 -2,-0.5 -2,-0.0 -0.928 45.2 -81.9-149.9 172.1 -9.3 7.0 7.3 73 73 A D >> - 0 0 95 -2,-0.3 3,-1.0 1,-0.2 4,-0.7 -0.011 68.7 -63.1 -68.8-180.0 -11.0 10.4 6.6 74 74 A E T 34 S- 0 0 157 1,-0.3 -1,-0.2 2,-0.1 -18,-0.1 -0.547 120.6 -4.9 -71.7 121.1 -12.9 11.2 3.4 75 75 A D T 34 S+ 0 0 73 -2,-0.4 -19,-1.6 -19,-0.1 -18,-1.5 0.949 111.2 99.5 60.8 51.6 -10.6 11.0 0.3 76 76 A C T <4 + 0 0 2 -3,-1.0 -26,-2.6 -20,-0.2 -2,-0.1 0.593 52.8 83.8-130.1 -46.8 -7.5 10.4 2.4 77 77 A G E < +D 49 0A 0 -4,-0.7 -16,-1.1 -28,-0.2 -18,-0.7 -0.375 52.8 168.2 -67.2 141.7 -6.7 6.7 2.4 78 78 A V E -D 48 0A 0 -30,-0.9 -30,-3.7 -20,-0.2 2,-0.4 -0.976 25.3-143.2-157.0 141.1 -4.7 5.3 -0.5 79 79 A F E +D 47 0A 4 -2,-0.3 2,-0.3 -32,-0.3 -32,-0.2 -0.901 31.0 150.8-110.4 134.1 -2.9 2.1 -1.4 80 80 A V E -D 46 0A 9 -34,-1.0 -34,-2.4 -2,-0.4 5,-0.1 -0.990 44.8 -91.7-156.9 156.6 0.3 2.0 -3.4 81 81 A A >> - 0 0 10 -2,-0.3 3,-1.8 -36,-0.2 4,-1.2 -0.305 40.6-110.1 -69.5 154.3 3.5 -0.0 -3.9 82 82 A L G >4 S+ 0 0 71 -38,-0.5 3,-0.9 1,-0.3 -1,-0.1 0.891 120.8 59.5 -50.4 -43.9 6.6 0.8 -1.8 83 83 A D G 34 S+ 0 0 122 1,-0.3 -1,-0.3 3,-0.1 -2,-0.0 0.793 104.4 51.8 -56.6 -28.0 8.3 2.0 -5.0 84 84 A K G <4 S+ 0 0 84 -3,-1.8 -67,-0.8 -68,-0.0 -1,-0.3 0.767 98.9 80.5 -79.6 -27.1 5.4 4.5 -5.2 85 85 A L E << S-B 16 0A 11 -4,-1.2 2,-0.5 -3,-0.9 -69,-0.2 -0.471 70.8-145.8 -80.7 152.4 6.0 5.7 -1.6 86 86 A E E -B 15 0A 76 -71,-0.6 -71,-1.7 -2,-0.1 2,-0.2 -0.931 14.0-132.7-124.9 108.4 8.8 8.2 -0.8 87 87 A L E -B 14 0A 87 -2,-0.5 2,-0.4 -73,-0.2 -73,-0.2 -0.373 25.5-159.4 -59.9 124.3 10.5 7.8 2.6 88 88 A I - 0 0 55 -75,-1.3 2,-0.1 -2,-0.2 -1,-0.0 -0.895 19.4-111.3-112.0 138.6 10.7 11.2 4.3 89 89 A E - 0 0 160 -2,-0.4 -1,-0.0 1,-0.1 0, 0.0 -0.365 14.8-144.8 -65.7 141.5 13.1 12.1 7.1 90 90 A S S S+ 0 0 116 1,-0.2 -1,-0.1 -2,-0.1 3,-0.1 -0.116 81.3 81.2 -98.4 35.4 11.6 12.6 10.5 91 91 A G + 0 0 31 1,-0.1 -1,-0.2 3,-0.0 -2,-0.1 -0.457 41.7 161.0-139.5 66.1 14.0 15.4 11.4 92 92 A P S S+ 0 0 132 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 0.875 74.2 53.7 -52.3 -41.7 12.9 18.8 9.8 93 93 A S + 0 0 112 -3,-0.1 2,-0.3 2,-0.0 -3,-0.0 -0.874 69.6 151.4-102.6 117.9 15.1 20.7 12.3 94 94 A S 0 0 110 -2,-0.6 -3,-0.0 0, 0.0 0, 0.0 -0.963 360.0 360.0-149.0 127.5 18.8 19.6 12.4 95 95 A G 0 0 156 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.395 360.0 360.0-133.0 360.0 21.9 21.6 13.2