==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 02-JUL-04 1WM2 . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.-C.HUANG,T.-P.KO,S.S.-L.LI,A.H.-J.WANG . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5357.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A T > 0 0 105 0, 0.0 3,-1.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-177.7 18.1 -12.9 22.0 2 13 A E T 3 + 0 0 191 1,-0.3 4,-0.1 3,-0.0 0, 0.0 0.546 360.0 67.2 -76.2 -6.5 16.5 -12.5 25.4 3 14 A N T 3 S+ 0 0 152 2,-0.1 -1,-0.3 0, 0.0 2,-0.2 0.247 84.5 87.1 -97.8 9.5 19.8 -11.3 26.7 4 15 A N S < S- 0 0 64 -3,-1.2 2,-0.7 21,-0.0 20,-0.0 -0.562 87.0-109.5 -99.3 169.6 19.8 -8.1 24.8 5 16 A D - 0 0 114 -2,-0.2 20,-2.8 2,-0.0 2,-0.4 -0.932 37.0-163.4 -97.3 117.1 18.2 -4.8 25.9 6 17 A H E -A 24 0A 80 -2,-0.7 2,-0.4 18,-0.3 18,-0.3 -0.834 3.2-153.0-103.1 141.8 15.2 -4.3 23.6 7 18 A I E -A 23 0A 8 16,-3.1 16,-1.9 -2,-0.4 2,-0.5 -0.945 7.1-139.8-117.1 134.2 13.8 -0.9 23.5 8 19 A N E -A 22 0A 31 -2,-0.4 62,-2.4 14,-0.2 63,-0.6 -0.829 27.3-173.3 -88.7 132.6 10.1 -0.1 22.7 9 20 A L E -Ab 21 71A 0 12,-2.8 12,-2.5 -2,-0.5 2,-0.4 -0.960 17.7-147.9-129.0 147.3 9.8 2.9 20.6 10 21 A K E -Ab 20 72A 82 61,-2.6 63,-3.1 -2,-0.4 2,-0.6 -0.950 6.8-155.9-110.0 135.5 6.8 4.9 19.3 11 22 A V E -Ab 19 73A 0 8,-3.2 8,-2.3 -2,-0.4 2,-0.6 -0.944 14.8-165.5-110.5 116.6 7.0 6.6 15.9 12 23 A A E -Ab 18 74A 20 61,-3.0 63,-2.3 -2,-0.6 6,-0.2 -0.899 3.8-153.3-110.2 117.1 4.5 9.6 15.9 13 24 A G E > - b 0 75A 10 4,-2.2 3,-1.7 -2,-0.6 63,-0.2 -0.370 28.7-116.1 -82.0 164.5 3.5 11.1 12.6 14 25 A Q T 3 S+ 0 0 117 61,-1.0 -1,-0.1 1,-0.3 62,-0.1 0.656 115.0 68.1 -73.1 -9.3 2.4 14.7 12.2 15 26 A D T 3 S- 0 0 121 60,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.354 122.1-103.1 -88.8 5.4 -0.8 13.1 11.1 16 27 A G S < S+ 0 0 63 -3,-1.7 -2,-0.1 1,-0.3 -1,-0.0 0.196 76.3 138.0 97.4 -16.6 -1.6 11.8 14.5 17 28 A S - 0 0 33 -5,-0.1 -4,-2.2 1,-0.0 2,-0.4 -0.309 35.7-163.0 -67.0 143.1 -0.6 8.2 13.8 18 29 A V E -A 12 0A 95 -6,-0.2 2,-0.4 -3,-0.1 -6,-0.2 -0.959 9.2-176.3-129.3 114.0 1.4 6.3 16.5 19 30 A V E -A 11 0A 27 -8,-2.3 -8,-3.2 -2,-0.4 2,-0.3 -0.909 16.4-137.0-113.1 135.4 3.2 3.1 15.3 20 31 A Q E +A 10 0A 90 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.733 20.7 178.1-102.3 143.0 5.2 0.9 17.7 21 32 A F E -A 9 0A 29 -12,-2.5 -12,-2.8 -2,-0.3 2,-0.4 -0.927 13.6-161.9-131.8 155.4 8.6 -0.8 17.2 22 33 A K E +A 8 0A 136 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.933 26.4 154.4-137.8 118.5 10.7 -3.0 19.4 23 34 A I E -A 7 0A 10 -16,-1.9 -16,-3.1 -2,-0.4 2,-0.1 -0.929 49.0 -87.0-138.8 165.8 14.4 -3.3 18.5 24 35 A K E > -A 6 0A 83 -2,-0.3 3,-2.0 -18,-0.3 -18,-0.3 -0.403 43.1-113.9 -70.5 153.2 17.7 -4.1 20.3 25 36 A R T 3 S+ 0 0 94 -20,-2.8 38,-2.8 1,-0.3 39,-0.4 0.780 114.8 47.4 -61.0 -25.8 19.3 -1.0 21.8 26 37 A H T 3 S+ 0 0 133 -21,-0.2 -1,-0.3 36,-0.2 -2,-0.1 0.220 84.3 117.0-102.7 16.0 22.4 -1.2 19.4 27 38 A T S < S- 0 0 28 -3,-2.0 36,-0.1 1,-0.1 2,-0.1 -0.698 72.6-111.0 -86.1 133.8 20.3 -1.7 16.2 28 39 A P > - 0 0 50 0, 0.0 3,-2.1 0, 0.0 4,-0.4 -0.359 20.2-128.6 -62.4 140.2 20.7 1.0 13.5 29 40 A L T 3> S+ 0 0 1 31,-3.3 4,-3.0 28,-0.4 5,-0.2 0.616 99.2 84.9 -71.7 -10.3 17.5 3.0 13.1 30 41 A S H 3> S+ 0 0 28 28,-1.8 4,-2.7 30,-0.3 5,-0.3 0.840 84.6 61.3 -53.5 -31.1 17.6 2.3 9.4 31 42 A K H <> S+ 0 0 130 -3,-2.1 4,-1.8 27,-0.2 -1,-0.2 0.944 110.0 37.8 -60.9 -48.5 15.9 -0.9 10.4 32 43 A L H > S+ 0 0 1 -4,-0.4 4,-2.7 -3,-0.2 -2,-0.2 0.899 115.3 52.7 -70.3 -42.2 12.9 1.0 11.8 33 44 A M H X S+ 0 0 16 -4,-3.0 4,-2.3 1,-0.2 5,-0.2 0.916 111.9 44.9 -66.0 -42.0 12.9 3.7 9.1 34 45 A K H X S+ 0 0 106 -4,-2.7 4,-2.6 -5,-0.2 -1,-0.2 0.924 115.2 48.0 -63.9 -44.7 12.8 1.3 6.2 35 46 A A H X S+ 0 0 19 -4,-1.8 4,-2.6 -5,-0.3 5,-0.3 0.893 111.3 51.1 -60.1 -44.5 10.1 -0.9 7.9 36 47 A Y H X S+ 0 0 4 -4,-2.7 4,-2.5 2,-0.2 6,-0.3 0.930 111.0 46.8 -61.9 -47.6 8.0 2.2 8.7 37 48 A C H X>S+ 0 0 10 -4,-2.3 5,-2.0 -5,-0.2 4,-0.6 0.941 115.4 46.9 -64.8 -41.7 8.1 3.5 5.1 38 49 A E H <5S+ 0 0 136 -4,-2.6 3,-0.4 -5,-0.2 -2,-0.2 0.946 118.8 38.0 -62.7 -48.6 7.3 0.1 3.7 39 50 A R H <5S+ 0 0 201 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.766 117.4 47.0 -74.5 -32.4 4.4 -0.7 6.1 40 51 A Q H <5S- 0 0 86 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.417 111.0-114.1 -94.9 4.5 2.8 2.7 6.4 41 52 A G T <5S+ 0 0 65 -4,-0.6 2,-0.3 -3,-0.4 -3,-0.2 0.860 71.5 131.5 69.5 37.8 2.9 3.3 2.6 42 53 A L < - 0 0 37 -5,-2.0 2,-0.4 -6,-0.3 -1,-0.2 -0.777 53.0-128.7-119.1 160.1 5.3 6.2 2.7 43 54 A S >> - 0 0 60 -2,-0.3 3,-1.4 1,-0.1 4,-0.7 -0.896 18.0-128.6-110.1 143.4 8.5 6.8 0.7 44 55 A M G >4 S+ 0 0 86 -2,-0.4 3,-0.8 1,-0.3 -1,-0.1 0.851 107.0 57.2 -58.7 -38.3 11.8 7.7 2.5 45 56 A R G 34 S+ 0 0 206 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.727 106.8 50.2 -68.4 -17.4 12.4 10.8 0.4 46 57 A Q G <4 S+ 0 0 65 -3,-1.4 32,-5.4 32,-0.1 2,-0.3 0.562 106.7 56.4 -97.8 -9.4 9.1 12.2 1.5 47 58 A I E << -C 77 0A 4 -3,-0.8 2,-0.4 -4,-0.7 30,-0.2 -0.870 62.8-153.5-122.4 157.4 9.4 11.8 5.3 48 59 A R E -C 76 0A 102 28,-2.5 28,-2.3 -2,-0.3 2,-0.5 -0.996 8.8-149.3-129.6 131.2 11.9 12.9 7.8 49 60 A F E +C 75 0A 11 -2,-0.4 7,-2.1 7,-0.2 2,-0.3 -0.905 21.2 174.7-102.8 131.0 12.6 11.1 11.1 50 61 A R E -CD 74 55A 91 24,-2.8 24,-2.6 -2,-0.5 2,-0.4 -0.946 19.7-160.3-133.1 154.4 13.7 13.1 14.1 51 62 A F E > S- D 0 54A 27 3,-2.7 3,-2.1 -2,-0.3 22,-0.1 -0.979 83.9 -16.0-134.2 124.1 14.4 12.5 17.8 52 63 A D T 3 S- 0 0 129 -2,-0.4 -1,-0.1 20,-0.4 21,-0.1 0.902 131.0 -53.6 49.4 42.3 14.5 15.3 20.3 53 64 A G T 3 S+ 0 0 49 1,-0.2 -1,-0.3 -3,-0.0 0, 0.0 0.245 115.6 109.4 81.0 -11.3 14.7 17.6 17.2 54 65 A Q E < S-D 51 0A 123 -3,-2.1 -3,-2.7 1,-0.1 -1,-0.2 -0.760 73.2-112.2 -98.9 139.6 17.7 16.1 15.6 55 66 A P E -D 50 0A 73 0, 0.0 2,-0.5 0, 0.0 -5,-0.2 -0.383 30.8-124.4 -68.0 150.4 17.5 14.1 12.4 56 67 A I - 0 0 16 -7,-2.1 -7,-0.2 -27,-0.0 2,-0.2 -0.847 22.2-146.2 -95.6 126.0 18.2 10.4 12.8 57 68 A N > - 0 0 101 -2,-0.5 3,-1.7 1,-0.1 -28,-0.4 -0.554 27.4-103.2 -89.8 159.1 20.9 9.0 10.5 58 69 A E T 3 S+ 0 0 132 1,-0.3 -28,-1.8 -2,-0.2 -27,-0.2 0.854 119.5 37.5 -45.2 -48.2 21.0 5.5 9.0 59 70 A T T 3 S+ 0 0 87 -31,-0.2 -1,-0.3 -30,-0.2 2,-0.1 0.364 86.0 117.1 -97.6 9.7 23.5 4.1 11.5 60 71 A D < - 0 0 14 -3,-1.7 -31,-3.3 -32,-0.1 -30,-0.3 -0.460 50.5-157.2 -69.2 141.0 22.3 5.9 14.6 61 72 A T > - 0 0 17 -33,-0.3 4,-2.4 -2,-0.1 6,-0.2 -0.830 29.0-111.0-117.3 160.0 21.1 3.5 17.2 62 73 A P T 4>S+ 0 0 0 0, 0.0 5,-2.9 0, 0.0 4,-0.3 0.941 121.0 49.5 -54.9 -40.9 18.7 4.0 20.1 63 74 A A T >45S+ 0 0 17 -38,-2.8 3,-1.3 1,-0.2 -37,-0.1 0.929 109.6 50.3 -64.0 -43.1 21.7 3.6 22.5 64 75 A Q T 345S+ 0 0 123 -39,-0.4 -1,-0.2 1,-0.3 -38,-0.1 0.873 111.6 47.7 -63.2 -34.9 23.8 6.0 20.6 65 76 A L T 3<5S- 0 0 46 -4,-2.4 -1,-0.3 1,-0.0 -2,-0.2 0.420 114.8-118.9 -86.5 3.2 21.1 8.6 20.6 66 77 A E T < 5 + 0 0 166 -3,-1.3 -3,-0.2 -4,-0.3 -2,-0.1 0.854 52.6 170.1 61.8 35.8 20.6 8.0 24.4 67 78 A M < - 0 0 8 -5,-2.9 2,-0.3 -6,-0.2 -1,-0.2 -0.436 20.4-148.4 -71.4 154.9 17.0 6.9 23.9 68 79 A E > - 0 0 137 -2,-0.1 3,-1.8 1,-0.1 -61,-0.0 -0.831 36.5 -73.2-121.6 159.3 15.1 5.3 26.7 69 80 A D T 3 S+ 0 0 88 -2,-0.3 -60,-0.1 1,-0.3 -1,-0.1 -0.246 119.8 17.5 -53.0 139.3 12.3 2.7 26.6 70 81 A E T 3 S+ 0 0 86 -62,-2.4 -1,-0.3 1,-0.2 -61,-0.2 0.590 88.1 151.0 67.5 19.0 9.0 4.1 25.3 71 82 A D E < -b 9 0A 47 -3,-1.8 -61,-2.6 -63,-0.6 2,-0.4 -0.340 41.2-124.1 -72.3 162.6 10.7 7.2 23.8 72 83 A T E -b 10 0A 53 -63,-0.2 2,-0.5 -61,-0.1 -20,-0.4 -0.900 12.5-155.7-114.9 132.6 9.0 8.8 20.7 73 84 A I E -b 11 0A 0 -63,-3.1 -61,-3.0 -2,-0.4 2,-0.4 -0.908 21.4-135.6 -99.8 134.2 10.5 9.4 17.3 74 85 A D E -bC 12 50A 56 -24,-2.6 -24,-2.8 -2,-0.5 2,-0.4 -0.745 13.9-159.3 -94.1 139.4 8.8 12.2 15.3 75 86 A V E -bC 13 49A 3 -63,-2.3 -61,-1.0 -2,-0.4 2,-0.4 -0.971 5.6-170.8-118.6 130.5 7.9 11.9 11.6 76 87 A F E - C 0 48A 75 -28,-2.3 -28,-2.5 -2,-0.4 2,-0.4 -0.944 19.7-131.3-117.5 143.0 7.3 14.8 9.3 77 88 A Q E C 0 47A 109 -2,-0.4 -30,-0.3 -30,-0.2 -31,-0.1 -0.792 360.0 360.0 -95.3 138.0 6.0 14.5 5.8 78 89 A Q 0 0 144 -32,-5.4 -31,-0.2 -2,-0.4 -1,-0.1 0.501 360.0 360.0-113.4 360.0 7.8 16.4 3.0