==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 02-JUL-04 1WM3 . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.-C.HUANG,T.-P.KO,S.S.-L.LI,A.H.-J.WANG . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4980.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 15.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 17 A H 0 0 127 0, 0.0 2,-0.4 0, 0.0 18,-0.3 0.000 360.0 360.0 360.0 153.6 -11.6 9.0 6.3 2 18 A I E -A 18 0A 19 16,-2.8 16,-2.3 61,-0.1 2,-0.4 -0.898 360.0-122.9-114.1 155.7 -7.9 9.4 5.6 3 19 A N E -A 17 0A 53 -2,-0.4 62,-3.2 14,-0.2 63,-0.5 -0.792 30.1-174.2 -94.8 130.8 -5.2 7.3 7.2 4 20 A L E -Ab 16 66A 0 12,-2.8 12,-2.5 -2,-0.4 2,-0.4 -0.973 15.3-142.4-128.2 148.3 -2.5 9.1 9.1 5 21 A K E -Ab 15 67A 67 61,-2.6 63,-3.1 -2,-0.4 2,-0.5 -0.826 4.7-153.7-104.3 141.8 0.7 7.9 10.8 6 22 A V E -Ab 14 68A 0 8,-2.7 8,-2.3 -2,-0.4 2,-0.5 -0.976 18.6-163.2-117.0 112.6 2.0 9.3 14.1 7 23 A A E -Ab 13 69A 19 61,-2.7 63,-2.3 -2,-0.5 6,-0.2 -0.882 3.4-156.5-106.5 123.6 5.8 8.9 14.3 8 24 A G > - 0 0 13 4,-2.3 3,-2.0 -2,-0.5 63,-0.1 -0.462 33.0-109.6 -89.5 165.6 7.8 9.1 17.4 9 25 A Q T 3 S+ 0 0 152 61,-0.4 -1,-0.1 1,-0.3 62,-0.1 0.744 117.7 64.5 -67.9 -18.4 11.5 9.9 17.6 10 26 A D T 3 S- 0 0 136 2,-0.1 -1,-0.3 1,-0.0 -3,-0.0 0.472 123.0-103.8 -78.9 -1.0 12.1 6.3 18.7 11 27 A G S < S+ 0 0 56 -3,-2.0 -2,-0.1 1,-0.3 2,-0.0 0.293 72.7 146.1 92.1 -7.0 10.8 5.1 15.2 12 28 A S - 0 0 37 -5,-0.1 -4,-2.3 1,-0.0 2,-0.4 -0.351 30.5-163.3 -62.3 140.7 7.4 4.0 16.5 13 29 A V E -A 7 0A 81 -6,-0.2 2,-0.4 -8,-0.0 -6,-0.2 -0.973 6.9-175.6-130.2 116.7 4.6 4.5 13.9 14 30 A V E -A 6 0A 31 -8,-2.3 -8,-2.7 -2,-0.4 2,-0.3 -0.905 17.3-135.1-116.1 141.7 1.0 4.4 15.2 15 31 A Q E +A 5 0A 102 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.737 23.3 172.2-107.7 144.5 -2.0 4.6 12.8 16 32 A F E -A 4 0A 32 -12,-2.5 -12,-2.8 -2,-0.3 2,-0.4 -0.940 20.7-144.5-135.9 160.4 -5.2 6.6 13.0 17 33 A K E +A 3 0A 132 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.984 26.7 167.3-125.9 140.1 -8.1 7.3 10.6 18 34 A I E -A 2 0A 4 -16,-2.3 -16,-2.8 -2,-0.4 2,-0.1 -0.991 36.6-109.8-152.3 141.8 -9.8 10.7 10.7 19 35 A K > - 0 0 123 -2,-0.3 3,-1.6 -18,-0.3 39,-0.1 -0.433 35.6-115.3 -74.7 151.6 -12.2 12.6 8.4 20 36 A R T 3 S+ 0 0 117 1,-0.3 38,-2.8 37,-0.1 39,-0.4 0.756 112.1 41.7 -65.7 -26.6 -10.8 15.5 6.6 21 37 A H T 3 S+ 0 0 138 36,-0.2 -1,-0.3 35,-0.1 -2,-0.0 0.251 90.8 104.0-108.3 15.7 -12.9 18.2 8.3 22 38 A T S < S- 0 0 42 -3,-1.6 36,-0.1 1,-0.1 2,-0.0 -0.759 82.5-100.8 -94.2 138.2 -12.6 16.7 11.9 23 39 A P > - 0 0 53 0, 0.0 3,-2.1 0, 0.0 4,-0.4 -0.293 20.4-132.2 -61.9 137.9 -10.2 18.5 14.3 24 40 A L T 3> S+ 0 0 0 31,-3.2 4,-2.7 1,-0.3 3,-0.4 0.678 99.2 82.1 -64.1 -17.2 -6.9 16.8 14.8 25 41 A S H 3> S+ 0 0 24 28,-0.8 4,-2.4 30,-0.3 -1,-0.3 0.792 83.6 63.1 -58.2 -26.6 -7.3 17.2 18.5 26 42 A K H <> S+ 0 0 142 -3,-2.1 4,-1.8 2,-0.2 -1,-0.2 0.947 109.1 39.5 -55.5 -49.2 -9.5 14.0 18.2 27 43 A L H > S+ 0 0 5 -3,-0.4 4,-2.9 -4,-0.4 5,-0.2 0.885 114.0 53.1 -67.0 -44.8 -6.3 12.2 17.0 28 44 A M H X S+ 0 0 14 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.934 111.2 45.8 -61.7 -43.9 -4.0 13.9 19.5 29 45 A K H X S+ 0 0 145 -4,-2.4 4,-2.5 2,-0.2 5,-0.2 0.911 113.4 50.3 -65.5 -41.8 -6.2 12.9 22.5 30 46 A A H X S+ 0 0 33 -4,-1.8 4,-3.0 -5,-0.3 5,-0.3 0.931 109.3 51.3 -64.4 -39.0 -6.5 9.3 21.2 31 47 A Y H X S+ 0 0 8 -4,-2.9 4,-2.2 1,-0.2 6,-0.3 0.938 111.3 47.4 -60.4 -46.7 -2.8 9.0 20.7 32 48 A C H X>S+ 0 0 11 -4,-2.2 5,-2.3 -5,-0.2 4,-0.9 0.948 114.8 45.7 -62.7 -45.2 -2.2 10.2 24.2 33 49 A E H ><5S+ 0 0 171 -4,-2.5 3,-0.5 1,-0.2 -2,-0.2 0.924 116.5 43.9 -62.6 -48.7 -4.8 7.8 25.7 34 50 A R H 3<5S+ 0 0 209 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.836 119.4 42.3 -69.5 -30.1 -3.7 4.8 23.7 35 51 A Q H 3<5S- 0 0 84 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.478 108.0-118.4 -99.6 -0.6 0.1 5.4 24.3 36 52 A G T <<5 + 0 0 68 -4,-0.9 2,-0.3 -3,-0.5 -3,-0.2 0.863 69.0 135.4 64.0 38.0 -0.2 6.3 28.0 37 53 A L < - 0 0 66 -5,-2.3 2,-0.4 -6,-0.3 -1,-0.2 -0.753 49.1-126.3-115.6 163.4 1.2 9.8 27.3 38 54 A S >> - 0 0 26 -2,-0.3 3,-1.8 1,-0.1 4,-1.0 -0.919 11.5-139.2-113.7 138.7 0.3 13.3 28.4 39 55 A M T 34 S+ 0 0 83 -2,-0.4 -1,-0.1 1,-0.3 3,-0.0 0.734 104.6 70.4 -60.9 -22.9 -0.3 16.4 26.4 40 56 A R T 34 S+ 0 0 224 1,-0.2 -1,-0.3 3,-0.0 3,-0.0 0.825 109.7 30.2 -62.2 -26.5 1.7 18.1 29.1 41 57 A Q T <4 S+ 0 0 79 -3,-1.8 2,-0.3 2,-0.0 -1,-0.2 0.498 112.3 60.2-113.9 -11.5 4.8 16.4 27.8 42 58 A I < - 0 0 16 -4,-1.0 2,-0.3 28,-0.0 30,-0.2 -0.869 53.8-161.7-125.2 159.6 4.4 15.9 24.0 43 59 A R E -C 71 0A 127 28,-2.5 28,-2.7 -2,-0.3 2,-0.4 -0.973 11.4-142.4-134.6 146.7 3.8 18.1 21.0 44 60 A F E -C 70 0A 9 -2,-0.3 7,-2.0 7,-0.3 2,-0.3 -0.916 19.0-179.8-115.9 136.6 2.6 17.3 17.5 45 61 A R E -CD 69 50A 96 24,-2.7 24,-2.6 -2,-0.4 2,-0.4 -0.969 16.3-158.1-133.2 151.4 3.9 18.8 14.2 46 62 A F E > S- D 0 49A 23 3,-2.3 3,-2.1 -2,-0.3 22,-0.1 -0.988 84.0 -20.8-130.0 116.5 3.0 18.4 10.6 47 63 A D T 3 S- 0 0 136 -2,-0.4 -1,-0.1 20,-0.4 21,-0.1 0.881 130.2 -50.4 46.6 45.6 5.7 19.4 8.1 48 64 A G T 3 S+ 0 0 59 1,-0.2 -1,-0.3 21,-0.0 0, 0.0 0.358 114.3 113.1 84.7 -2.8 7.3 21.5 10.8 49 65 A Q E < -D 46 0A 82 -3,-2.1 -3,-2.3 1,-0.0 -1,-0.2 -0.796 69.7-115.8-105.4 137.7 4.2 23.4 11.9 50 66 A P E -D 45 0A 66 0, 0.0 2,-0.6 0, 0.0 -5,-0.2 -0.363 27.2-128.4 -64.1 145.5 2.6 22.9 15.3 51 67 A I - 0 0 15 -7,-2.0 -7,-0.3 -27,-0.0 2,-0.1 -0.906 24.4-154.1 -98.7 123.9 -0.9 21.4 15.2 52 68 A N > - 0 0 104 -2,-0.6 3,-1.0 4,-0.1 -28,-0.2 -0.413 31.2 -93.8 -92.1 169.3 -3.5 23.5 17.2 53 69 A E T 3 S+ 0 0 156 1,-0.3 -28,-0.8 -2,-0.1 -27,-0.1 0.746 120.7 33.5 -57.6 -34.0 -6.7 22.3 18.8 54 70 A T T 3 S+ 0 0 106 -30,-0.1 -1,-0.3 -31,-0.1 2,-0.1 0.507 84.6 122.4-109.5 -0.8 -9.0 23.1 16.0 55 71 A D < - 0 0 28 -3,-1.0 -31,-3.2 -32,-0.1 -30,-0.3 -0.410 46.8-154.8 -61.9 138.8 -6.8 22.4 12.9 56 72 A T > - 0 0 12 -33,-0.3 4,-2.0 -32,-0.1 5,-0.2 -0.698 28.0-110.7-109.2 160.4 -8.2 19.8 10.6 57 73 A P T 4>S+ 0 0 0 0, 0.0 5,-2.8 0, 0.0 4,-0.3 0.904 119.9 51.9 -55.6 -40.4 -6.4 17.5 8.1 58 74 A A T >45S+ 0 0 19 -38,-2.8 3,-1.2 1,-0.2 -37,-0.1 0.908 107.7 50.6 -65.0 -42.2 -8.0 19.6 5.2 59 75 A Q T 345S+ 0 0 118 -39,-0.4 -1,-0.2 1,-0.3 -38,-0.1 0.868 113.7 45.4 -60.6 -38.3 -6.7 22.9 6.6 60 76 A L T 3<5S- 0 0 20 -4,-2.0 -1,-0.3 2,-0.0 -2,-0.2 0.333 113.1-120.4 -88.0 7.2 -3.2 21.4 7.0 61 77 A E T < 5 + 0 0 154 -3,-1.2 -3,-0.2 -4,-0.3 2,-0.2 0.853 51.8 168.4 58.3 39.6 -3.4 19.9 3.5 62 78 A M < - 0 0 4 -5,-2.8 2,-0.3 -6,-0.2 -1,-0.2 -0.540 15.5-163.3 -83.5 149.0 -2.9 16.4 4.8 63 79 A E > - 0 0 138 -2,-0.2 3,-2.3 1,-0.1 -61,-0.1 -0.847 37.6 -65.7-128.3 160.6 -3.4 13.4 2.5 64 80 A D T 3 S+ 0 0 81 -2,-0.3 -60,-0.2 1,-0.3 -1,-0.1 -0.238 120.7 15.9 -47.6 132.2 -3.9 9.7 3.1 65 81 A E T 3 S+ 0 0 84 -62,-3.2 -1,-0.3 1,-0.3 -61,-0.2 0.439 89.5 144.9 75.2 11.8 -0.8 8.0 4.6 66 82 A D E < -b 4 0A 47 -3,-2.3 -61,-2.6 -63,-0.5 2,-0.4 -0.311 44.2-123.1 -66.9 162.4 0.8 11.3 5.7 67 83 A T E -b 5 0A 52 -63,-0.2 2,-0.4 -61,-0.1 -20,-0.4 -0.917 13.2-157.9-117.7 130.9 2.9 11.4 8.9 68 84 A I E -b 6 0A 1 -63,-3.1 -61,-2.7 -2,-0.4 2,-0.4 -0.911 21.5-138.1 -96.0 133.1 2.5 13.6 12.0 69 85 A D E -bC 7 45A 58 -24,-2.6 -24,-2.7 -2,-0.4 2,-0.4 -0.778 12.3-156.0 -96.7 134.2 5.7 13.9 14.1 70 86 A V E + C 0 44A 9 -63,-2.3 -61,-0.4 -2,-0.4 2,-0.3 -0.917 14.9 179.3-111.6 136.5 5.5 13.7 17.9 71 87 A F E C 0 43A 71 -28,-2.7 -28,-2.5 -2,-0.4 -63,-0.0 -0.925 360.0 360.0-129.4 157.4 8.1 15.3 20.1 72 88 A Q 0 0 163 -2,-0.3 -1,-0.1 -30,-0.2 -2,-0.0 0.752 360.0 360.0 -75.0 360.0 8.8 15.7 23.8