==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 07-OCT-04 1WR0 . COMPND 2 MOLECULE: SKD1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.TAKASU,J.G.JEE,A.OHNO,N.GODA,K.FUJIWARA,H.TOCHIO, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5824.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 85.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 19.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 58.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 110 0, 0.0 4,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0-139.4 5.4 -25.9 -0.5 2 2 A S >> + 0 0 81 3,-0.1 4,-1.0 2,-0.1 3,-0.9 0.921 360.0 173.6 -66.9 -47.8 5.8 -23.1 -3.1 3 3 A D T 34 S- 0 0 115 1,-0.3 2,-1.0 2,-0.2 -1,-0.0 0.797 74.7 -65.5 38.7 52.2 3.3 -20.8 -1.2 4 4 A H T >> S+ 0 0 147 1,-0.1 3,-2.1 3,-0.0 4,-2.0 0.005 121.5 101.8 61.3 -22.4 4.1 -17.8 -3.6 5 5 A M T <4 S+ 0 0 116 -2,-1.0 -2,-0.2 -3,-0.9 -1,-0.1 0.779 72.0 63.8 -58.0 -29.0 7.7 -17.6 -2.3 6 6 A S T 3< S+ 0 0 93 -4,-1.0 -1,-0.3 1,-0.2 -3,-0.1 0.682 123.5 15.5 -64.2 -19.9 8.9 -19.3 -5.5 7 7 A S T <4 S+ 0 0 77 -3,-2.1 2,-0.4 1,-0.2 -2,-0.2 0.451 120.2 61.5-135.4 -10.5 7.7 -16.3 -7.6 8 8 A T S < S- 0 0 36 -4,-2.0 -1,-0.2 4,-0.0 0, 0.0 -0.989 76.3-120.7-132.7 132.0 7.1 -13.3 -5.1 9 9 A S > - 0 0 32 -2,-0.4 4,-2.6 43,-0.1 5,-0.1 -0.241 23.2-118.8 -68.1 157.0 9.6 -11.5 -2.8 10 10 A P H > S+ 0 0 78 0, 0.0 4,-2.4 0, 0.0 5,-0.1 0.855 117.1 54.0 -65.8 -30.5 9.1 -11.4 1.0 11 11 A N H > S+ 0 0 48 2,-0.2 4,-2.8 1,-0.2 5,-0.1 0.927 110.3 45.4 -65.7 -45.2 8.9 -7.6 0.7 12 12 A L H > S+ 0 0 33 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.922 112.1 51.8 -65.0 -43.5 6.1 -7.8 -1.9 13 13 A Q H X S+ 0 0 67 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.942 113.3 45.1 -55.1 -50.0 4.3 -10.5 0.3 14 14 A K H X S+ 0 0 95 -4,-2.4 4,-2.3 1,-0.2 5,-0.3 0.955 109.5 55.7 -55.6 -55.3 4.5 -8.1 3.3 15 15 A A H X S+ 0 0 0 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.868 111.6 42.2 -48.5 -48.1 3.4 -5.1 1.3 16 16 A I H X S+ 0 0 77 -4,-2.0 4,-2.7 2,-0.2 -1,-0.2 0.886 111.0 55.0 -71.7 -40.6 0.1 -6.7 0.1 17 17 A D H X S+ 0 0 103 -4,-2.0 4,-1.4 -5,-0.2 -2,-0.2 0.904 115.4 40.0 -57.6 -41.1 -0.7 -8.3 3.5 18 18 A L H X S+ 0 0 9 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.868 112.0 55.2 -80.8 -36.0 -0.4 -4.8 5.1 19 19 A A H X S+ 0 0 3 -4,-2.4 4,-1.7 -5,-0.3 -2,-0.2 0.911 108.5 50.5 -58.2 -43.8 -2.2 -3.1 2.2 20 20 A S H X S+ 0 0 86 -4,-2.7 4,-1.6 1,-0.2 -2,-0.2 0.907 111.4 47.6 -60.0 -42.5 -5.1 -5.6 2.7 21 21 A K H X S+ 0 0 94 -4,-1.4 4,-2.4 2,-0.2 5,-0.2 0.845 103.8 62.0 -69.4 -33.3 -5.1 -4.7 6.5 22 22 A A H X S+ 0 0 0 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.962 107.6 43.1 -55.0 -53.7 -5.1 -0.9 5.6 23 23 A A H X S+ 0 0 36 -4,-1.7 4,-2.7 1,-0.2 5,-0.3 0.861 110.1 58.3 -57.7 -40.4 -8.5 -1.4 3.9 24 24 A Q H X S+ 0 0 130 -4,-1.6 4,-0.7 2,-0.2 -2,-0.2 0.910 112.5 38.5 -58.6 -46.9 -9.7 -3.6 6.8 25 25 A E H <>S+ 0 0 40 -4,-2.4 5,-1.9 2,-0.1 6,-0.7 0.916 120.3 48.1 -67.4 -46.1 -9.1 -0.7 9.4 26 26 A D H ><5S+ 0 0 5 -4,-2.5 3,-2.7 -5,-0.2 5,-0.2 0.982 111.1 45.4 -58.4 -65.7 -10.3 2.0 6.9 27 27 A K H 3<5S+ 0 0 156 -4,-2.7 -1,-0.2 1,-0.3 -3,-0.1 0.643 108.2 58.4 -64.7 -13.6 -13.6 0.4 5.7 28 28 A A T 3<5S- 0 0 60 -4,-0.7 -1,-0.3 -5,-0.3 -2,-0.2 0.481 112.2-127.3 -80.8 -6.2 -14.5 -0.5 9.3 29 29 A G T < 5S+ 0 0 32 -3,-2.7 -3,-0.2 -4,-0.1 -2,-0.1 0.753 70.3 134.3 49.1 39.4 -14.2 3.3 9.9 30 30 A N < - 0 0 86 -5,-1.9 51,-0.3 -6,-0.2 -4,-0.2 0.860 38.8-172.7 -64.0 -38.3 -11.8 2.8 12.8 31 31 A Y + 0 0 63 -6,-0.7 50,-2.3 -5,-0.2 -5,-0.1 0.873 55.4 91.8 36.2 55.9 -9.8 5.6 11.1 32 32 A E S S+ 0 0 135 48,-0.2 4,-0.4 49,-0.2 3,-0.2 0.464 93.8 16.4-130.8 -75.2 -6.9 5.0 13.5 33 33 A E S > S+ 0 0 79 1,-0.2 4,-1.7 2,-0.1 3,-0.4 0.748 108.1 85.6 -77.2 -23.7 -4.3 2.5 12.3 34 34 A A H >> S+ 0 0 0 1,-0.2 4,-2.4 2,-0.2 3,-0.6 0.879 82.8 54.9 -44.3 -60.4 -5.6 2.8 8.6 35 35 A L H 3> S+ 0 0 31 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.872 110.1 45.1 -43.5 -54.6 -3.5 5.9 7.6 36 36 A Q H 3> S+ 0 0 97 -4,-0.4 4,-2.3 -3,-0.4 -1,-0.2 0.821 111.4 54.1 -67.9 -28.1 -0.1 4.3 8.7 37 37 A L H X S+ 0 0 0 -4,-2.3 4,-2.4 1,-0.2 3,-0.6 0.945 109.3 41.6 -46.7 -58.1 2.2 -0.6 2.0 42 42 A V H 3X S+ 0 0 16 -4,-1.1 4,-2.9 1,-0.2 5,-0.3 0.825 103.4 68.0 -69.0 -28.3 3.8 1.7 -0.7 43 43 A Q H 3X S+ 0 0 95 -4,-1.8 4,-1.0 2,-0.2 -1,-0.2 0.900 111.4 34.9 -52.0 -42.8 7.0 2.0 1.4 44 44 A Y H + 0 0 135 2,-0.1 5,-0.7 1,-0.1 -1,-0.1 -0.941 55.9 29.1-145.1 158.3 10.9 -8.9 -12.0 55 55 A G T > 5S- 0 0 56 -2,-0.3 3,-2.2 3,-0.2 2,-0.8 0.739 93.7-108.3 63.3 29.5 9.4 -9.9 -15.4 56 56 A D G > 5S+ 0 0 154 1,-0.3 3,-0.6 2,-0.1 -2,-0.1 -0.344 110.7 18.5 48.9 -89.4 10.7 -6.7 -17.3 57 57 A K G > 5S+ 0 0 149 -2,-0.8 3,-2.4 1,-0.2 -1,-0.3 0.742 107.4 86.5 -71.4 -25.1 7.3 -4.8 -17.8 58 58 A A G X 5 + 0 0 60 -3,-2.2 3,-2.4 1,-0.3 4,-0.2 0.721 68.4 78.2 -57.3 -25.4 5.5 -6.9 -15.0 59 59 A K G X> S+ 0 0 95 -3,-2.4 4,-1.7 1,-0.2 -1,-0.3 0.710 74.4 79.2 -58.4 -21.4 3.9 -2.2 -13.5 61 61 A S H <> S+ 0 0 70 -3,-2.4 4,-1.0 1,-0.2 -1,-0.2 0.911 98.5 38.6 -52.3 -48.7 1.6 -4.5 -11.4 62 62 A I H <> S+ 0 0 7 -3,-1.1 4,-3.1 -4,-0.2 5,-0.3 0.840 106.9 65.6 -74.1 -30.9 2.6 -2.7 -8.2 63 63 A R H X S+ 0 0 141 -4,-0.9 4,-1.6 1,-0.2 -2,-0.2 0.893 101.3 50.1 -61.5 -38.6 2.7 0.8 -9.8 64 64 A A H X S+ 0 0 64 -4,-1.7 4,-0.6 2,-0.2 -1,-0.2 0.908 117.9 38.5 -62.1 -46.1 -1.1 0.6 -10.4 65 65 A K H >X S+ 0 0 44 -4,-1.0 4,-2.0 2,-0.2 3,-1.1 0.939 113.3 52.9 -73.8 -47.6 -1.9 -0.4 -6.7 66 66 A C H 3X S+ 0 0 6 -4,-3.1 4,-2.1 1,-0.3 5,-0.2 0.897 102.6 59.4 -59.9 -40.4 0.7 1.8 -4.9 67 67 A T H 3< S+ 0 0 87 -4,-1.6 4,-0.4 -5,-0.3 -1,-0.3 0.779 109.9 44.3 -59.1 -28.9 -0.6 5.0 -6.7 68 68 A E H XX S+ 0 0 106 -3,-1.1 4,-3.0 -4,-0.6 3,-0.9 0.920 109.2 54.6 -79.5 -45.5 -4.0 4.4 -5.1 69 69 A Y H 3X S+ 0 0 41 -4,-2.0 4,-1.0 1,-0.3 -2,-0.2 0.861 109.0 47.8 -62.8 -34.6 -2.7 3.5 -1.6 70 70 A L H 3< S+ 0 0 85 -4,-2.1 4,-0.3 2,-0.2 -1,-0.3 0.732 118.0 42.6 -73.4 -22.8 -0.8 6.8 -1.3 71 71 A D H X4 S+ 0 0 77 -3,-0.9 3,-1.3 -4,-0.4 4,-0.5 0.870 106.9 58.1 -89.0 -44.7 -3.9 8.8 -2.6 72 72 A R H >X S+ 0 0 120 -4,-3.0 4,-1.1 1,-0.3 3,-0.8 0.763 95.0 66.5 -64.1 -25.2 -6.6 7.0 -0.6 73 73 A A H 3X S+ 0 0 5 -4,-1.0 4,-1.2 -5,-0.3 -1,-0.3 0.858 91.4 63.1 -60.0 -35.2 -4.9 7.9 2.7 74 74 A E H <4 S+ 0 0 107 -3,-1.3 -1,-0.2 -4,-0.3 -2,-0.2 0.783 99.0 55.2 -64.9 -24.7 -5.7 11.7 2.0 75 75 A K H X4 S+ 0 0 88 -3,-0.8 3,-1.2 -4,-0.5 4,-0.3 0.881 102.1 56.0 -73.7 -38.3 -9.4 10.8 2.2 76 76 A L H >X S+ 0 0 2 -4,-1.1 4,-2.8 1,-0.2 3,-2.2 0.850 88.3 78.5 -58.0 -35.8 -9.0 9.3 5.7 77 77 A K T 3< S+ 0 0 118 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.1 0.631 81.7 68.0 -56.5 -16.7 -7.5 12.6 7.0 78 78 A E T <4 S+ 0 0 137 -3,-1.2 -1,-0.3 -4,-0.2 -2,-0.2 0.871 123.8 8.2 -61.4 -41.6 -11.1 14.0 7.2 79 79 A Y T <4 S+ 0 0 93 -3,-2.2 -2,-0.2 -4,-0.3 -3,-0.1 0.551 86.9 135.4-126.3 -17.0 -12.0 11.7 10.1 80 80 A L < 0 0 45 -4,-2.8 -48,-0.2 1,-0.1 -49,-0.1 -0.177 360.0 360.0 -38.5 107.2 -8.7 10.0 11.2 81 81 A K 0 0 218 -50,-2.3 -49,-0.2 -51,-0.3 -1,-0.1 0.889 360.0 360.0 -52.9 360.0 -8.7 10.2 15.0