==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS,UNKNOWN FUNCTION 02-MAY-05 1X3A . COMPND 2 MOLECULE: SYNAPSE ASSOCIATED PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7500.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 70.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 107.7 -25.1 21.4 -5.9 2 2 A S - 0 0 131 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.599 360.0-162.1-104.0 166.7 -21.7 21.4 -7.6 3 3 A S + 0 0 122 -2,-0.2 3,-0.1 1,-0.1 0, 0.0 -0.834 34.4 129.1-153.9 109.9 -18.3 20.0 -6.5 4 4 A G + 0 0 82 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.652 57.7 69.6-126.1 -47.3 -14.9 21.0 -7.9 5 5 A S + 0 0 118 1,-0.2 -1,-0.2 2,-0.0 0, 0.0 -0.535 45.0 166.5 -80.5 144.6 -12.6 21.9 -5.1 6 6 A S - 0 0 77 -2,-0.2 2,-1.4 1,-0.1 -1,-0.2 0.684 8.4-177.3-120.1 -60.6 -11.3 19.2 -2.8 7 7 A G + 0 0 76 1,-0.2 -1,-0.1 3,-0.0 3,-0.1 -0.569 48.7 102.7 93.0 -73.7 -8.4 20.4 -0.7 8 8 A T S S- 0 0 89 -2,-1.4 -1,-0.2 1,-0.1 4,-0.1 -0.066 86.3 -91.0 -45.0 142.4 -7.5 17.2 1.2 9 9 A N > - 0 0 120 1,-0.2 2,-2.6 -3,-0.1 3,-0.6 0.085 53.1 -80.9 -49.6 169.3 -4.4 15.4 -0.2 10 10 A D T 3 S+ 0 0 114 1,-0.2 4,-0.5 81,-0.2 -1,-0.2 -0.395 92.0 118.8 -76.1 66.1 -4.9 12.8 -2.9 11 11 A E T 3> + 0 0 119 -2,-2.6 4,-0.9 2,-0.2 -1,-0.2 0.669 58.2 69.5-102.2 -24.6 -5.8 10.1 -0.4 12 12 A E H <> S+ 0 0 138 -3,-0.6 4,-0.5 1,-0.2 -2,-0.1 0.788 107.1 41.0 -64.2 -27.5 -9.3 9.4 -1.7 13 13 A T H >> S+ 0 0 52 2,-0.2 4,-2.1 1,-0.2 3,-0.6 0.823 95.3 77.5 -88.5 -36.5 -7.7 7.8 -4.8 14 14 A I H 3> S+ 0 0 29 -4,-0.5 4,-1.7 1,-0.3 -2,-0.2 0.830 99.4 46.9 -41.1 -39.1 -4.9 6.0 -2.9 15 15 A Q H 3X S+ 0 0 70 -4,-0.9 4,-1.0 2,-0.2 -1,-0.3 0.885 105.2 58.2 -72.7 -40.3 -7.5 3.5 -2.0 16 16 A Q H X S+ 0 0 86 -4,-2.1 4,-1.0 1,-0.2 3,-0.6 0.935 105.5 56.0 -70.7 -48.1 -5.4 2.2 -6.7 18 18 A I H 3X S+ 0 0 16 -4,-1.7 4,-0.6 -5,-0.3 -1,-0.2 0.687 105.8 56.8 -58.2 -16.9 -4.9 -0.4 -4.0 19 19 A L H >X S+ 0 0 53 -4,-1.0 4,-1.1 -3,-0.2 3,-0.8 0.868 94.1 62.3 -82.2 -40.3 -8.1 -1.9 -5.3 20 20 A A H << S+ 0 0 67 -4,-1.1 3,-0.2 -3,-0.6 -2,-0.2 0.810 97.0 62.4 -54.9 -30.9 -7.0 -2.4 -8.9 21 21 A L H >< S+ 0 0 25 -4,-1.0 3,-2.3 1,-0.2 -1,-0.3 0.907 96.0 57.0 -62.3 -43.2 -4.3 -4.7 -7.5 22 22 A S H << S+ 0 0 1 -3,-0.8 -1,-0.2 -4,-0.6 -2,-0.2 0.850 101.7 56.7 -57.0 -35.6 -7.0 -7.1 -6.2 23 23 A A T 3< S+ 0 0 72 -4,-1.1 2,-0.4 -3,-0.2 -1,-0.3 0.310 103.5 73.5 -79.5 10.2 -8.4 -7.4 -9.7 24 24 A D < - 0 0 53 -3,-2.3 4,-0.2 1,-0.1 38,-0.0 -0.955 50.4-178.0-127.6 145.8 -4.9 -8.5 -10.8 25 25 A K S > S+ 0 0 84 -2,-0.4 4,-1.4 2,-0.1 3,-0.3 0.665 79.3 71.4-110.0 -28.6 -3.0 -11.8 -10.3 26 26 A R H > S+ 0 0 182 1,-0.2 4,-2.8 2,-0.2 -1,-0.0 0.787 95.9 57.5 -59.4 -27.6 0.3 -10.9 -12.0 27 27 A N H 4 S+ 0 0 7 -6,-0.2 -1,-0.2 2,-0.2 -2,-0.1 0.903 100.6 54.3 -70.2 -42.5 1.0 -8.6 -9.0 28 28 A F H 4 S+ 0 0 0 -3,-0.3 51,-0.2 -4,-0.2 -1,-0.2 0.842 117.4 38.1 -60.3 -34.1 0.6 -11.5 -6.5 29 29 A L H < S+ 0 0 76 -4,-1.4 -2,-0.2 50,-0.1 -1,-0.2 0.889 98.9 88.8 -83.6 -44.2 3.3 -13.4 -8.5 30 30 A R < - 0 0 179 -4,-2.8 0, 0.0 -5,-0.2 0, 0.0 -0.267 62.4-165.8 -57.1 137.9 5.5 -10.5 -9.4 31 31 A D - 0 0 101 51,-0.0 -2,-0.0 48,-0.0 -3,-0.0 -0.953 20.9-104.8-130.9 149.5 8.2 -9.8 -6.7 32 32 A P - 0 0 14 0, 0.0 47,-0.0 0, 0.0 50,-0.0 -0.297 38.8-109.7 -69.7 153.4 10.5 -6.8 -6.1 33 33 A P - 0 0 92 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.095 23.5-111.5 -69.8-172.5 14.2 -7.0 -6.9 34 34 A A S S+ 0 0 97 1,-0.1 4,-0.2 3,-0.1 0, 0.0 0.870 107.3 66.1 -91.1 -46.1 17.1 -7.1 -4.5 35 35 A G S S+ 0 0 74 2,-0.1 2,-0.3 3,-0.0 -1,-0.1 0.851 86.9 84.4 -43.6 -41.9 18.7 -3.7 -5.0 36 36 A V S S- 0 0 55 1,-0.1 2,-1.6 2,-0.1 0, 0.0 -0.502 80.4-138.7 -69.3 125.3 15.5 -2.2 -3.6 37 37 A Q + 0 0 173 -2,-0.3 2,-0.9 1,-0.1 -1,-0.1 -0.615 37.3 160.9 -87.1 81.2 15.7 -2.0 0.2 38 38 A F - 0 0 54 -2,-1.6 2,-1.7 -4,-0.2 -1,-0.1 -0.721 20.1-168.1-105.1 82.3 12.1 -3.1 1.0 39 39 A N + 0 0 139 -2,-0.9 2,-0.5 2,-0.0 -2,-0.1 -0.522 17.6 173.8 -72.6 88.0 12.3 -4.2 4.7 40 40 A F - 0 0 38 -2,-1.7 2,-0.7 4,-0.0 -2,-0.1 -0.851 21.0-155.0-102.6 131.4 8.8 -5.9 4.9 41 41 A D > - 0 0 95 -2,-0.5 4,-3.0 1,-0.2 5,-0.2 -0.885 5.3-169.5-108.9 105.5 7.8 -7.8 8.0 42 42 A F H > S+ 0 0 44 -2,-0.7 4,-2.0 2,-0.2 3,-0.4 0.982 87.6 50.8 -52.8 -75.2 5.2 -10.4 7.4 43 43 A D H 4 S+ 0 0 102 1,-0.3 -1,-0.2 2,-0.2 -2,-0.0 0.768 116.1 48.4 -34.4 -32.6 4.3 -11.3 11.0 44 44 A Q H > S+ 0 0 122 -3,-0.2 4,-0.6 1,-0.2 -1,-0.3 0.941 122.4 29.4 -76.8 -51.1 3.9 -7.5 11.3 45 45 A M H X S+ 0 0 60 -4,-3.0 4,-0.5 -3,-0.4 -2,-0.2 0.228 101.5 91.8 -92.9 13.2 1.8 -6.9 8.2 46 46 A Y H < S+ 0 0 95 -4,-2.0 4,-0.4 -5,-0.2 3,-0.4 0.978 95.5 28.4 -69.8 -58.7 0.3 -10.4 8.5 47 47 A P H >> S+ 0 0 56 0, 0.0 3,-2.2 0, 0.0 4,-0.8 0.908 112.9 64.4 -69.8 -44.2 -2.8 -9.5 10.7 48 48 A V H 3X S+ 0 0 77 -4,-0.6 4,-0.5 1,-0.3 3,-0.3 0.751 98.7 58.5 -52.2 -24.0 -3.1 -5.9 9.4 49 49 A A H 3X S+ 0 0 0 -4,-0.5 4,-1.1 -3,-0.4 3,-0.5 0.761 90.3 69.7 -77.6 -26.2 -3.8 -7.6 6.0 50 50 A L H <> S+ 0 0 87 -3,-2.2 4,-1.7 -4,-0.4 3,-0.3 0.852 96.5 53.2 -59.6 -35.4 -6.8 -9.4 7.5 51 51 A V H X S+ 0 0 83 -4,-0.8 4,-1.2 -3,-0.3 -1,-0.2 0.804 105.9 53.2 -70.1 -29.8 -8.6 -6.1 7.7 52 52 A M H X S+ 0 0 38 -4,-0.5 4,-1.3 -3,-0.5 -1,-0.2 0.701 106.8 55.0 -77.6 -20.2 -8.0 -5.4 4.1 53 53 A L H < S+ 0 0 14 -4,-1.1 7,-0.4 -3,-0.3 6,-0.2 0.975 105.0 47.1 -75.8 -60.5 -9.5 -8.8 3.1 54 54 A Q H < S+ 0 0 134 -4,-1.7 3,-0.2 1,-0.3 -2,-0.2 0.891 117.2 45.8 -47.9 -45.8 -12.9 -8.5 4.8 55 55 A E H < S+ 0 0 77 -4,-1.2 2,-0.7 1,-0.2 -1,-0.3 0.891 117.5 46.3 -66.2 -40.6 -13.2 -5.0 3.3 56 56 A D X - 0 0 11 -4,-1.3 4,-1.1 1,-0.2 -1,-0.2 -0.861 62.4-179.6-109.4 99.6 -12.0 -6.2 -0.1 57 57 A E H > S+ 0 0 103 -2,-0.7 4,-2.9 1,-0.2 5,-0.4 0.861 85.3 56.4 -63.4 -36.4 -13.7 -9.5 -1.1 58 58 A L H > S+ 0 0 81 1,-0.2 4,-1.4 2,-0.2 5,-0.3 0.877 104.0 52.8 -63.3 -38.5 -11.7 -9.5 -4.4 59 59 A L H > S+ 0 0 0 -7,-0.2 4,-1.1 -6,-0.2 -1,-0.2 0.789 119.9 35.4 -67.8 -27.7 -8.5 -9.4 -2.4 60 60 A S H X S+ 0 0 35 -4,-1.1 4,-2.8 -7,-0.4 5,-0.3 0.934 113.9 50.6 -88.8 -65.5 -9.6 -12.4 -0.4 61 61 A K H X S+ 0 0 144 -4,-2.9 4,-1.0 1,-0.2 -3,-0.2 0.812 120.5 42.3 -42.7 -34.9 -11.6 -14.6 -2.8 62 62 A M H >X S+ 0 0 51 -4,-1.4 4,-2.1 -5,-0.4 3,-0.8 0.977 109.0 52.6 -77.5 -64.0 -8.6 -14.2 -5.0 63 63 A R H 3< S+ 0 0 30 -4,-1.1 7,-0.2 -5,-0.3 4,-0.2 0.859 109.4 53.7 -38.8 -47.0 -5.7 -14.6 -2.6 64 64 A F H >< S+ 0 0 160 -4,-2.8 3,-0.8 1,-0.3 5,-0.4 0.925 116.3 36.5 -56.7 -47.8 -7.3 -17.9 -1.4 65 65 A A H << S+ 0 0 58 -4,-1.0 -1,-0.3 -3,-0.8 -2,-0.2 0.561 121.1 49.7 -81.9 -9.1 -7.4 -19.2 -5.0 66 66 A L T 3X>S+ 0 0 17 -4,-2.1 5,-1.2 -3,-0.2 4,-0.9 0.184 99.3 97.5-112.4 13.6 -4.1 -17.6 -5.7 67 67 A V T <45S- 0 0 14 -3,-0.8 -1,-0.2 -5,-0.3 5,-0.1 -0.891 105.9 -10.8-165.6 131.2 -2.3 -19.0 -2.6 68 68 A P T 45S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.989 128.9 77.7 -69.8 0.1 -0.7 -21.2 -2.1 69 69 A K T 45S+ 0 0 152 -5,-0.4 -2,-0.3 -6,-0.2 -3,-0.1 0.801 123.6 4.1 -30.2 -44.7 -2.0 -21.6 -5.6 70 70 A L T <5S- 0 0 35 -4,-0.9 2,-0.2 1,-0.4 -3,-0.2 0.782 136.3 -8.1-108.2 -70.4 0.5 -19.0 -6.6 71 71 A V S - 0 0 152 -2,-0.2 4,-2.7 -5,-0.1 5,-0.3 -0.461 45.0-111.3 -71.8 139.8 2.9 -18.5 0.1 73 73 A E H > S+ 0 0 74 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.813 120.9 51.1 -36.7 -39.1 0.5 -16.5 2.2 74 74 A E H > S+ 0 0 103 2,-0.2 4,-1.0 1,-0.2 3,-0.3 0.993 111.2 42.4 -65.1 -63.9 3.6 -14.7 3.4 75 75 A V H >> S+ 0 0 45 1,-0.2 4,-2.5 2,-0.2 3,-1.5 0.915 111.9 56.6 -48.9 -50.2 5.1 -13.9 0.1 76 76 A F H 3X S+ 0 0 0 -4,-2.7 4,-2.3 1,-0.3 -1,-0.2 0.912 107.2 47.8 -49.0 -49.3 1.7 -12.9 -1.3 77 77 A W H 3X S+ 0 0 2 -4,-1.7 4,-1.0 -5,-0.3 -1,-0.3 0.670 112.5 53.9 -67.3 -16.0 1.3 -10.3 1.5 78 78 A R H X S+ 0 0 4 -4,-1.7 4,-2.1 1,-0.2 3,-1.5 0.978 102.2 53.4 -56.0 -62.5 0.8 -0.5 -2.2 85 85 A S H 3X S+ 0 0 53 -4,-2.5 4,-3.0 1,-0.3 5,-0.3 0.836 106.9 56.1 -42.0 -39.2 3.4 1.4 -0.1 86 86 A L H 3X S+ 0 0 91 -4,-1.3 4,-2.2 -5,-0.4 -1,-0.3 0.892 107.6 47.5 -62.8 -40.9 4.6 2.8 -3.4 87 87 A I H X S+ 0 0 109 -4,-3.0 4,-2.4 -5,-0.3 3,-2.1 0.921 100.5 63.8 -52.8 -48.8 4.1 7.1 -0.5 90 90 A S H 3X S+ 0 0 55 -4,-2.2 4,-3.2 1,-0.3 -1,-0.2 0.895 87.5 70.3 -41.8 -52.9 3.8 8.7 -4.0 91 91 A A H 3< S+ 0 0 38 -4,-1.3 -1,-0.3 -3,-0.4 -81,-0.2 0.822 116.1 24.8 -34.0 -44.6 1.0 11.0 -2.5 92 92 A Q H X< S+ 0 0 136 -3,-2.1 3,-1.2 -4,-0.6 -2,-0.2 0.919 114.7 62.6 -88.7 -55.4 3.8 12.7 -0.6 93 93 A L H 3< S+ 0 0 144 -4,-2.4 2,-0.9 1,-0.3 3,-0.4 0.841 99.8 59.5 -37.5 -44.1 6.9 11.9 -2.8 94 94 A T T 3< + 0 0 94 -4,-3.2 -1,-0.3 -5,-0.2 -2,-0.1 -0.126 67.5 144.2 -81.5 40.5 5.2 13.9 -5.5 95 95 A S < - 0 0 99 -3,-1.2 -1,-0.2 -2,-0.9 -2,-0.1 0.903 68.9 -99.7 -44.4 -51.2 5.1 16.9 -3.2 96 96 A G S S+ 0 0 50 -3,-0.4 2,-0.2 1,-0.4 -1,-0.1 -0.438 92.7 68.6 167.2 -84.3 5.7 19.2 -6.2 97 97 A P - 0 0 122 0, 0.0 2,-0.5 0, 0.0 -1,-0.4 -0.450 65.3-144.6 -69.8 135.2 9.2 20.5 -7.0 98 98 A S + 0 0 121 -2,-0.2 2,-0.3 -3,-0.1 -4,-0.0 -0.900 25.5 167.4-107.0 124.2 11.7 18.0 -8.2 99 99 A S 0 0 120 -2,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.946 360.0 360.0-134.0 154.4 15.4 18.4 -7.3 100 100 A G 0 0 132 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.079 360.0 360.0 98.3 360.0 18.5 16.2 -7.4