==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 13-MAY-05 1X45 . COMPND 2 MOLECULE: AMYLOID BETA (A4) PRECURSOR PROTEIN-BINDING, . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 58.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 23.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 115 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-107.5 -4.8 16.2 -16.0 2 2 A S + 0 0 128 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.100 360.0 131.4 -39.8 108.8 -8.0 15.3 -14.2 3 3 A S + 0 0 98 2,-0.0 2,-0.1 1,-0.0 -1,-0.0 -0.912 9.4 123.9-167.5 137.8 -7.9 11.5 -14.1 4 4 A G + 0 0 59 -2,-0.3 2,-0.3 5,-0.0 5,-0.1 -0.335 19.3 142.7 162.1 112.1 -8.3 8.8 -11.6 5 5 A S - 0 0 108 3,-0.2 2,-0.2 -2,-0.1 86,-0.2 -0.961 63.1 -47.8-154.0 167.9 -10.6 5.7 -11.4 6 6 A S S S+ 0 0 78 -2,-0.3 2,-0.3 84,-0.1 86,-0.2 -0.146 104.8 64.6 -43.0 98.8 -10.7 2.1 -10.3 7 7 A G S S+ 0 0 18 84,-0.3 84,-2.3 -2,-0.2 2,-0.4 -0.929 91.2 0.5 176.8-152.6 -7.5 0.9 -11.9 8 8 A D E -A 90 0A 106 -2,-0.3 2,-0.3 82,-0.2 82,-0.2 -0.479 64.7-166.6 -65.6 116.5 -3.7 1.3 -11.9 9 9 A V E -A 89 0A 8 80,-3.0 80,-2.6 -2,-0.4 2,-0.5 -0.808 11.5-157.7-108.3 148.8 -2.8 3.8 -9.3 10 10 A F E -A 88 0A 105 -2,-0.3 2,-0.8 78,-0.2 78,-0.2 -0.935 2.5-161.6-130.2 109.6 0.6 5.5 -8.8 11 11 A I E -A 87 0A 1 76,-2.0 76,-1.5 -2,-0.5 2,-0.7 -0.802 8.3-158.0 -93.8 110.1 1.5 7.0 -5.4 12 12 A E E +A 86 0A 153 -2,-0.8 2,-0.2 33,-0.2 74,-0.2 -0.782 31.9 141.0 -91.5 113.1 4.3 9.5 -5.7 13 13 A K - 0 0 22 72,-1.8 2,-0.4 -2,-0.7 6,-0.1 -0.740 48.9 -90.7-137.1-175.0 6.1 10.0 -2.4 14 14 A Q > - 0 0 149 -2,-0.2 3,-1.4 4,-0.2 70,-0.1 -0.836 42.8-104.0-107.4 143.1 9.6 10.5 -0.9 15 15 A K T 3 S+ 0 0 140 -2,-0.4 68,-0.3 1,-0.2 3,-0.1 -0.131 103.8 32.2 -58.0 157.2 12.0 7.7 0.2 16 16 A G T 3 S+ 0 0 49 66,-2.4 -1,-0.2 1,-0.3 2,-0.2 0.064 102.8 97.3 82.7 -27.8 12.4 7.1 3.9 17 17 A E S < S- 0 0 113 -3,-1.4 -1,-0.3 65,-0.4 67,-0.2 -0.548 74.0-117.3 -93.0 159.8 8.8 8.1 4.5 18 18 A I - 0 0 84 -2,-0.2 -4,-0.2 -3,-0.1 -1,-0.1 -0.382 30.4-102.2 -90.0 171.1 5.8 5.8 4.8 19 19 A L - 0 0 13 59,-0.3 27,-1.1 2,-0.1 28,-0.2 0.475 46.1-137.5 -71.3 -0.0 2.7 5.6 2.6 20 20 A G + 0 0 2 1,-0.1 21,-1.9 25,-0.1 27,-0.5 0.882 64.6 112.0 42.3 49.6 0.9 7.5 5.3 21 21 A V E -B 40 0A 29 19,-0.2 2,-0.4 25,-0.1 19,-0.2 -0.992 57.4-142.2-152.1 142.4 -2.1 5.3 4.9 22 22 A V E -B 39 0A 72 17,-3.1 16,-2.6 -2,-0.3 17,-1.4 -0.878 16.7-165.3-109.2 138.0 -3.9 2.7 7.0 23 23 A I E -B 37 0A 6 -2,-0.4 2,-0.3 14,-0.3 14,-0.2 -0.840 3.8-171.3-119.9 157.5 -5.4 -0.5 5.7 24 24 A V E -B 36 0A 53 12,-2.5 12,-2.3 -2,-0.3 10,-0.1 -0.950 40.5 -68.3-143.7 162.5 -7.9 -3.0 7.1 25 25 A E - 0 0 100 -2,-0.3 2,-1.7 10,-0.2 10,-0.2 -0.221 43.3-126.7 -52.3 133.7 -9.4 -6.4 6.3 26 26 A S > - 0 0 9 8,-0.3 4,-0.7 1,-0.1 3,-0.4 -0.178 54.4 -94.5 -78.3 46.0 -11.7 -6.2 3.3 27 27 A G T >4 - 0 0 53 -2,-1.7 3,-1.3 1,-0.2 2,-0.2 0.900 44.7-103.2 38.5 88.7 -14.4 -7.9 5.4 28 28 A W T 34 S+ 0 0 176 1,-0.2 -1,-0.2 5,-0.1 3,-0.1 -0.109 108.1 63.3 -40.5 96.3 -14.1 -11.5 4.5 29 29 A G T 34 + 0 0 71 -3,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.155 69.4 104.1 172.0 -32.4 -17.0 -11.8 2.1 30 30 A S S << S- 0 0 19 -3,-1.3 -1,-0.3 -4,-0.7 -4,-0.0 -0.194 87.7 -91.9 -68.4 163.8 -16.4 -9.5 -0.9 31 31 A I S S+ 0 0 132 1,-0.3 -1,-0.1 -3,-0.1 -3,-0.0 0.913 118.8 14.6 -38.5 -68.8 -15.4 -10.9 -4.2 32 32 A L S S- 0 0 62 35,-0.0 2,-1.3 3,-0.0 3,-0.3 -0.817 77.8-157.0-117.5 91.5 -11.7 -10.5 -3.6 33 33 A P + 0 0 31 0, 0.0 35,-1.1 0, 0.0 -6,-0.1 -0.511 45.7 126.0 -69.7 93.5 -11.0 -10.0 0.1 34 34 A T - 0 0 4 -2,-1.3 -8,-0.3 33,-0.2 2,-0.3 0.726 67.6 -56.8-111.9 -75.6 -7.6 -8.3 0.1 35 35 A V - 0 0 0 -3,-0.3 23,-2.5 -10,-0.2 2,-0.3 -0.891 39.7-157.3-175.6 144.5 -7.4 -5.0 1.9 36 36 A I E -BC 24 57A 35 -12,-2.3 -12,-2.5 21,-0.3 2,-0.4 -0.939 36.0 -93.3-130.8 152.9 -9.1 -1.5 2.0 37 37 A I E +B 23 0A 5 19,-1.9 18,-0.9 16,-0.4 -14,-0.3 -0.484 35.5 178.7 -66.8 120.3 -8.1 1.9 3.2 38 38 A A E - 0 0 35 -16,-2.6 2,-0.3 -2,-0.4 -15,-0.2 0.754 67.5 -10.1 -92.2 -29.7 -9.3 2.4 6.8 39 39 A N E -B 22 0A 89 -17,-1.4 -17,-3.1 14,-0.0 2,-0.4 -0.965 59.7-134.4-167.2 151.7 -7.8 5.9 7.2 40 40 A M E -B 21 0A 17 -2,-0.3 -19,-0.2 -19,-0.2 -20,-0.1 -0.937 29.7-111.7-117.4 136.8 -5.5 8.4 5.6 41 41 A M > - 0 0 92 -21,-1.9 2,-2.0 -2,-0.4 3,-1.0 -0.281 31.5-112.4 -62.5 147.0 -2.8 10.4 7.3 42 42 A H T 3 S+ 0 0 171 1,-0.3 -1,-0.1 5,-0.1 -22,-0.0 -0.500 107.8 5.4 -82.0 72.2 -3.3 14.2 7.5 43 43 A G T 3 S+ 0 0 46 -2,-2.0 -1,-0.3 -23,-0.2 -23,-0.1 0.487 99.1 132.4 129.4 14.0 -0.5 15.1 5.2 44 44 A G <> - 0 0 7 -3,-1.0 4,-1.3 -24,-0.3 5,-0.1 -0.198 69.2-102.0 -85.9-179.2 0.8 11.8 3.9 45 45 A P H > S+ 0 0 20 0, 0.0 4,-2.8 0, 0.0 -33,-0.2 0.900 120.1 47.1 -69.7 -43.0 1.5 10.7 0.3 46 46 A A H > S+ 0 0 1 -27,-1.1 4,-1.9 2,-0.2 5,-0.4 0.928 111.3 50.5 -65.3 -46.7 -1.7 8.7 -0.1 47 47 A E H 4 S+ 0 0 87 -27,-0.5 -1,-0.2 1,-0.2 -27,-0.1 0.847 118.0 40.6 -60.4 -34.7 -3.9 11.5 1.3 48 48 A K H < S+ 0 0 152 -4,-1.3 -2,-0.2 1,-0.2 -1,-0.2 0.836 106.4 63.5 -82.1 -35.9 -2.2 13.9 -1.1 49 49 A S H < S- 0 0 31 -4,-2.8 -2,-0.2 -5,-0.1 -3,-0.2 0.903 80.6-162.0 -55.0 -44.4 -2.1 11.5 -4.1 50 50 A G < + 0 0 51 -4,-1.9 -1,-0.1 -5,-0.1 -3,-0.1 0.706 54.1 119.1 66.9 18.9 -5.9 11.4 -4.1 51 51 A K S S+ 0 0 70 -5,-0.4 2,-0.2 -41,-0.0 -1,-0.1 0.755 72.3 37.6 -84.9 -27.2 -5.7 8.2 -6.1 52 52 A L - 0 0 11 -6,-0.4 2,-0.3 -46,-0.1 5,-0.0 -0.556 69.9-151.4-115.1-179.0 -7.6 6.2 -3.5 53 53 A N > - 0 0 85 -2,-0.2 3,-2.7 4,-0.0 2,-0.4 -0.993 38.3 -78.7-154.8 151.9 -10.5 6.7 -1.1 54 54 A I T 3 S+ 0 0 104 -2,-0.3 -16,-0.1 1,-0.3 3,-0.1 -0.328 121.4 23.7 -54.6 106.9 -11.7 5.5 2.3 55 55 A G T 3 S+ 0 0 29 -18,-0.9 -1,-0.3 1,-0.5 39,-0.2 0.019 89.8 124.2 124.9 -27.3 -13.3 2.2 1.4 56 56 A D < - 0 0 23 -3,-2.7 -19,-1.9 37,-0.2 -1,-0.5 -0.291 50.3-139.7 -65.2 150.0 -11.4 1.3 -1.8 57 57 A Q E -CD 36 92A 5 35,-1.6 35,-3.0 -21,-0.2 2,-0.6 -0.754 8.3-123.1-111.9 159.4 -9.6 -2.0 -1.9 58 58 A I E - D 0 91A 8 -23,-2.5 33,-0.3 -2,-0.3 8,-0.2 -0.900 14.9-170.5-106.8 116.6 -6.2 -2.9 -3.4 59 59 A M E S- 0 0 47 31,-2.6 7,-1.4 -2,-0.6 8,-0.4 0.895 72.2 -20.5 -68.8 -41.1 -6.1 -5.7 -6.0 60 60 A S E -ED 65 90A 26 30,-0.9 30,-1.6 5,-0.2 2,-0.4 -0.956 57.2-121.4-158.8 173.0 -2.3 -5.9 -6.0 61 61 A I E > S-ED 64 89A 2 3,-1.1 3,-0.6 -2,-0.3 28,-0.2 -0.899 86.8 -33.5-131.3 104.2 0.9 -4.1 -5.1 62 62 A N T 3 S- 0 0 75 26,-2.1 27,-0.1 -2,-0.4 3,-0.1 0.765 132.2 -38.6 58.7 25.0 3.4 -3.4 -7.9 63 63 A G T 3 S+ 0 0 66 1,-0.2 2,-0.7 25,-0.1 -1,-0.3 0.568 112.9 122.8 101.2 12.5 2.3 -6.7 -9.3 64 64 A T E < -E 61 0A 67 -3,-0.6 -3,-1.1 13,-0.0 -1,-0.2 -0.832 56.0-142.4-111.7 94.3 1.9 -8.6 -6.0 65 65 A S E -E 60 0A 74 -2,-0.7 -5,-0.2 -5,-0.2 -6,-0.1 -0.247 11.3-166.1 -54.7 135.1 -1.6 -9.9 -5.7 66 66 A L > + 0 0 0 -7,-1.4 3,-0.7 -8,-0.2 2,-0.2 0.315 40.0 136.4-105.6 5.1 -2.9 -9.7 -2.1 67 67 A V T 3 S+ 0 0 64 -8,-0.4 -33,-0.2 1,-0.3 -8,-0.0 -0.360 82.4 1.8 -57.8 118.7 -5.8 -12.0 -2.7 68 68 A G T 3 S+ 0 0 46 -35,-1.1 -1,-0.3 1,-0.3 -34,-0.1 -0.097 99.1 129.1 94.7 -36.3 -6.0 -14.3 0.3 69 69 A L < - 0 0 59 -3,-0.7 -1,-0.3 1,-0.1 -3,-0.1 -0.200 63.7-108.6 -54.6 141.0 -3.1 -12.7 2.1 70 70 A P > - 0 0 59 0, 0.0 4,-2.4 0, 0.0 5,-0.3 -0.245 23.9-109.8 -69.8 159.5 -3.8 -11.7 5.7 71 71 A L H > S+ 0 0 41 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.897 120.1 52.5 -56.2 -42.9 -4.3 -8.1 6.8 72 72 A S H > S+ 0 0 97 2,-0.2 4,-1.4 1,-0.1 -1,-0.2 0.916 112.4 45.3 -60.2 -44.9 -0.9 -8.3 8.7 73 73 A T H >> S+ 0 0 55 2,-0.2 4,-1.7 1,-0.2 3,-1.6 0.994 109.1 51.5 -62.4 -65.8 0.9 -9.6 5.6 74 74 A C H 3X S+ 0 0 0 -4,-2.4 4,-1.0 1,-0.3 -1,-0.2 0.835 108.7 55.7 -40.0 -40.7 -0.6 -7.1 3.0 75 75 A Q H 3X S+ 0 0 52 -4,-1.8 4,-1.4 -5,-0.3 3,-0.5 0.893 102.9 54.3 -62.0 -41.1 0.5 -4.4 5.5 76 76 A S H < S+ 0 0 14 -4,-1.0 3,-0.7 -3,-0.5 -59,-0.3 0.674 106.6 57.7 -90.3 -20.8 3.0 -1.8 2.0 79 79 A K H >< S+ 0 0 137 -4,-1.4 3,-0.7 -3,-0.4 -2,-0.2 0.651 96.8 63.7 -82.6 -16.8 5.5 -1.0 4.8 80 80 A G T 3< S+ 0 0 39 -4,-1.1 3,-0.3 1,-0.2 -1,-0.2 0.308 83.5 78.2 -89.4 9.4 8.4 -2.0 2.5 81 81 A L T X + 0 0 7 -3,-0.7 3,-0.7 1,-0.2 -1,-0.2 0.338 67.8 88.7 -96.9 4.8 7.6 0.8 0.1 82 82 A K T < S+ 0 0 89 -3,-0.7 -66,-2.4 1,-0.2 -65,-0.4 0.870 82.0 56.5 -69.0 -37.6 9.2 3.4 2.4 83 83 A N T 3 S+ 0 0 124 -3,-0.3 2,-0.3 -68,-0.3 -1,-0.2 0.574 107.1 65.0 -70.6 -7.9 12.7 2.9 0.8 84 84 A Q < - 0 0 60 -3,-0.7 -67,-0.1 -67,-0.2 3,-0.1 -0.844 62.8-161.2-117.2 154.0 11.0 3.8 -2.5 85 85 A S S S+ 0 0 36 -2,-0.3 -72,-1.8 1,-0.2 2,-0.5 0.893 78.5 45.6 -95.2 -60.0 9.4 7.0 -3.7 86 86 A R E +A 12 0A 153 -74,-0.2 2,-0.3 -76,-0.0 -1,-0.2 -0.756 68.9 175.9 -91.8 129.9 7.2 6.0 -6.6 87 87 A V E -A 11 0A 2 -76,-1.5 -76,-2.0 -2,-0.5 2,-0.5 -0.988 21.0-142.6-135.7 144.1 5.0 2.9 -6.2 88 88 A K E +A 10 0A 89 -2,-0.3 -26,-2.1 -78,-0.2 2,-0.3 -0.910 25.6 166.2-109.7 129.5 2.3 1.2 -8.3 89 89 A L E -AD 9 61A 5 -80,-2.6 -80,-3.0 -2,-0.5 2,-0.6 -1.000 32.2-128.7-143.3 141.7 -0.8 -0.3 -6.9 90 90 A N E -AD 8 60A 45 -30,-1.6 -31,-2.6 -2,-0.3 -30,-0.9 -0.805 27.6-168.1 -93.9 117.7 -4.1 -1.5 -8.3 91 91 A I E - D 0 58A 5 -84,-2.3 2,-0.3 -2,-0.6 -84,-0.3 -0.813 8.0-174.8-106.7 146.1 -7.2 -0.1 -6.6 92 92 A V E - D 0 57A 50 -35,-3.0 -35,-1.6 -2,-0.3 -2,-0.0 -0.900 34.9-109.8-144.2 111.2 -10.8 -1.2 -7.0 93 93 A S - 0 0 46 -2,-0.3 3,-0.3 -37,-0.2 -37,-0.2 -0.062 45.4-115.1 -38.7 121.6 -13.8 0.5 -5.4 94 94 A G - 0 0 12 -39,-0.2 2,-1.6 1,-0.2 3,-0.2 0.237 53.8 -55.3 -50.5-176.6 -15.0 -1.9 -2.7 95 95 A P + 0 0 79 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.492 61.2 169.8 -69.8 88.4 -18.4 -3.6 -2.8 96 96 A S + 0 0 106 -2,-1.6 2,-0.6 -3,-0.3 -2,-0.1 0.942 61.1 70.4 -65.7 -49.3 -20.7 -0.5 -3.2 97 97 A S 0 0 123 -3,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.606 360.0 360.0 -75.2 113.8 -23.8 -2.5 -4.0 98 98 A G 0 0 122 -2,-0.6 -2,-0.0 0, 0.0 0, 0.0 -0.988 360.0 360.0 155.8 360.0 -24.9 -4.3 -0.8