==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 05-AUG-10 2XNQ . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR B.M.LUNDE,M.HORNER,A.MEINHART . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5116.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 26.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 19.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 326 A S 0 0 149 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 10.1 1.7 0.0 33.8 2 327 A H > + 0 0 105 46,-0.1 3,-1.2 4,-0.0 44,-0.1 0.488 360.0 98.4-139.3 -44.6 -1.0 0.9 31.2 3 328 A M T 3 S+ 0 0 127 1,-0.3 72,-0.1 2,-0.1 74,-0.0 -0.083 94.4 10.4 -60.4 145.7 -1.1 4.7 30.8 4 329 A K T 3 S+ 0 0 149 70,-0.2 -1,-0.3 1,-0.1 48,-0.2 0.731 90.5 121.7 62.4 27.1 0.7 6.2 27.8 5 330 A S < + 0 0 2 -3,-1.2 41,-2.8 41,-0.1 2,-0.4 0.338 48.3 88.2-103.0 4.9 1.3 2.7 26.3 6 331 A R E -A 45 0A 12 68,-0.4 68,-3.0 39,-0.2 2,-0.6 -0.905 65.3-145.9-108.9 134.2 -0.4 3.4 23.0 7 332 A L E -AB 44 73A 0 37,-3.1 37,-2.2 -2,-0.4 2,-0.4 -0.868 8.8-147.3 -98.3 122.0 1.4 4.9 19.9 8 333 A F E -AB 43 72A 69 64,-3.0 64,-1.8 -2,-0.6 2,-0.4 -0.724 14.8-164.4 -81.8 136.3 -0.6 7.2 17.6 9 334 A I E +AB 42 71A 2 33,-2.7 33,-2.7 -2,-0.4 2,-0.2 -0.983 13.2 167.7-127.2 119.9 0.4 7.0 14.0 10 335 A G E +AB 41 70A 3 60,-2.6 60,-2.1 -2,-0.4 31,-0.2 -0.697 53.2 51.8-118.8-178.8 -0.5 9.6 11.3 11 336 A N S S+ 0 0 69 29,-0.6 -1,-0.1 -2,-0.2 30,-0.1 0.864 71.6 159.7 55.4 37.4 0.6 10.3 7.8 12 337 A L - 0 0 21 28,-0.3 -1,-0.2 -3,-0.2 53,-0.1 -0.472 49.9 -85.8 -74.3 160.0 0.1 6.7 6.7 13 338 A P - 0 0 16 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.306 27.5-128.7 -57.8 151.4 -0.4 5.8 3.0 14 339 A L S S+ 0 0 172 2,-0.1 3,-0.1 -3,-0.1 2,-0.1 0.832 92.3 80.0 -70.5 -32.7 -3.9 6.2 1.6 15 340 A K S S- 0 0 165 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.397 107.1 -75.7 -69.0 151.0 -3.4 2.6 0.2 16 341 A N - 0 0 168 -2,-0.1 2,-0.4 1,-0.1 -1,-0.1 -0.230 47.1-145.6 -55.0 132.3 -3.9 -0.3 2.6 17 342 A V - 0 0 17 -4,-0.1 2,-0.3 -3,-0.1 -1,-0.1 -0.836 17.3-118.7-103.0 131.6 -1.0 -0.8 5.0 18 343 A S > - 0 0 48 -2,-0.4 4,-2.1 1,-0.1 5,-0.2 -0.585 7.3-146.5 -73.5 132.6 -0.1 -4.4 6.1 19 344 A K H > S+ 0 0 117 -2,-0.3 4,-2.3 1,-0.2 -1,-0.1 0.801 102.4 57.7 -66.4 -26.4 -0.3 -5.1 9.8 20 345 A E H > S+ 0 0 112 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.897 104.9 49.4 -69.3 -39.7 2.6 -7.4 9.4 21 346 A D H > S+ 0 0 65 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.923 112.4 48.2 -63.1 -44.2 4.8 -4.6 8.0 22 347 A L H X S+ 0 0 2 -4,-2.1 4,-2.5 1,-0.2 5,-0.3 0.922 111.4 50.7 -61.3 -41.9 3.7 -2.4 10.9 23 348 A F H X S+ 0 0 100 -4,-2.3 4,-2.9 1,-0.2 -2,-0.2 0.926 108.0 52.2 -60.1 -44.9 4.6 -5.3 13.3 24 349 A R H < S+ 0 0 140 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.905 114.1 43.7 -59.7 -41.6 8.0 -5.7 11.7 25 350 A I H < S+ 0 0 30 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.907 126.2 28.1 -65.5 -47.2 8.8 -1.9 12.2 26 351 A F H >< S+ 0 0 0 -4,-2.5 3,-1.9 -5,-0.2 4,-0.4 0.699 96.0 81.3-101.3 -21.1 7.5 -1.6 15.7 27 352 A S G >< S+ 0 0 37 -4,-2.9 3,-1.2 -5,-0.3 -1,-0.2 0.795 81.5 69.9 -61.0 -25.2 7.8 -4.9 17.5 28 353 A P G 3 S+ 0 0 99 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.764 95.9 56.5 -62.7 -19.2 11.5 -4.3 18.2 29 354 A Y G < S- 0 0 43 -3,-1.9 2,-0.3 1,-0.3 -2,-0.2 0.644 124.1 -56.2 -83.5 -18.6 10.4 -1.6 20.7 30 355 A G S < S- 0 0 21 -3,-1.2 -1,-0.3 -4,-0.4 2,-0.3 -0.928 75.2 -38.8 161.1 176.6 8.2 -3.9 22.7 31 356 A H - 0 0 109 -2,-0.3 16,-0.8 -3,-0.1 2,-0.5 -0.483 52.5-145.9 -71.4 127.9 5.3 -6.3 22.9 32 357 A I E +C 46 0A 19 -2,-0.3 14,-0.2 14,-0.2 3,-0.1 -0.832 23.6 173.1 -99.6 125.3 2.4 -5.4 20.6 33 358 A M E + 0 0 127 12,-3.4 2,-0.3 -2,-0.5 13,-0.2 0.719 67.9 15.0-103.6 -19.5 -1.1 -6.1 21.7 34 359 A Q E -C 45 0A 76 11,-1.2 11,-2.4 2,-0.0 2,-0.4 -0.989 48.8-168.6-153.0 143.0 -3.1 -4.4 19.0 35 360 A I E +C 44 0A 23 -2,-0.3 2,-0.5 9,-0.2 9,-0.2 -0.977 18.3 179.8-130.1 118.6 -2.6 -2.9 15.6 36 361 A N E -C 43 0A 35 7,-2.5 7,-2.5 -2,-0.4 2,-0.5 -0.982 8.9-165.9-125.5 123.4 -5.5 -0.8 14.4 37 362 A I E +C 42 0A 53 -2,-0.5 5,-0.2 5,-0.2 2,-0.2 -0.949 10.9 177.5-114.5 123.9 -5.6 1.0 11.0 38 363 A K - 0 0 107 3,-3.0 -2,-0.0 -2,-0.5 5,-0.0 -0.428 47.1 -84.1-111.4-174.2 -8.3 3.6 10.3 39 364 A N S S+ 0 0 165 1,-0.2 3,-0.1 -2,-0.2 -2,-0.0 0.885 121.7 10.5 -60.7 -44.5 -8.8 5.8 7.3 40 365 A A S S+ 0 0 77 1,-0.1 -29,-0.6 -29,-0.0 -28,-0.3 0.335 132.5 12.5-121.4 1.5 -6.4 8.6 8.2 41 366 A F E -A 10 0A 82 -31,-0.2 -3,-3.0 -30,-0.1 2,-0.3 -0.957 57.0-157.4-164.4 171.2 -4.4 7.2 11.2 42 367 A G E -AC 9 37A 2 -33,-2.7 -33,-2.7 -2,-0.3 2,-0.3 -0.910 8.7-139.8-146.4 179.8 -3.6 4.1 13.1 43 368 A F E -AC 8 36A 19 -7,-2.5 -7,-2.5 -2,-0.3 2,-0.5 -0.997 4.6-152.9-144.7 155.3 -2.4 3.0 16.5 44 369 A I E -AC 7 35A 0 -37,-2.2 -37,-3.1 -2,-0.3 2,-0.7 -0.992 16.0-150.5-122.2 120.8 -0.2 0.4 18.1 45 370 A Q E -AC 6 34A 20 -11,-2.4 -12,-3.4 -2,-0.5 -11,-1.2 -0.845 18.1-178.3 -91.2 116.9 -1.0 -0.7 21.6 46 371 A F E - C 0 32A 1 -41,-2.8 -14,-0.2 -2,-0.7 -41,-0.1 -0.469 34.5-119.9 -95.8 177.7 2.1 -1.7 23.5 47 372 A D S S+ 0 0 73 -16,-0.8 -41,-0.1 -2,-0.2 -15,-0.1 0.424 90.8 32.0-100.3 4.6 2.1 -3.0 27.1 48 373 A N S > S- 0 0 46 -43,-0.3 4,-0.7 -17,-0.2 3,-0.2 -0.988 74.8-121.1-156.2 157.6 4.3 -0.3 28.6 49 374 A P H > S+ 0 0 40 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.766 103.0 67.1 -77.7 -25.4 5.1 3.4 28.0 50 375 A Q H > S+ 0 0 85 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.901 96.5 56.7 -61.5 -39.9 8.8 3.0 27.4 51 376 A S H > S+ 0 0 5 -3,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.889 107.0 48.9 -57.4 -42.3 8.1 1.2 24.1 52 377 A V H X S+ 0 0 0 -4,-0.7 4,-2.4 -48,-0.2 -1,-0.2 0.933 111.5 48.5 -63.3 -48.9 6.0 4.2 22.9 53 378 A R H X S+ 0 0 119 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.919 113.2 48.2 -57.0 -42.9 8.8 6.7 23.8 54 379 A D H X S+ 0 0 49 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.898 109.6 51.7 -66.6 -41.9 11.4 4.5 22.1 55 380 A A H X S+ 0 0 0 -4,-2.4 4,-2.3 -5,-0.2 5,-0.3 0.918 112.4 46.6 -60.8 -43.0 9.3 4.1 18.9 56 381 A I H X S+ 0 0 35 -4,-2.4 4,-1.3 1,-0.2 -2,-0.2 0.943 113.6 48.4 -64.2 -46.4 8.8 7.9 18.7 57 382 A E H < S+ 0 0 133 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.899 121.8 33.1 -58.3 -43.8 12.5 8.6 19.3 58 383 A X H < S+ 0 0 157 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 0.683 123.2 38.3 -93.7 -22.5 13.7 6.1 16.7 59 384 A E H >< S+ 0 0 26 -4,-2.3 3,-1.2 -5,-0.2 10,-0.4 0.519 85.7 91.6-110.0 -5.3 11.1 6.0 13.9 60 385 A S T 3< S+ 0 0 34 -4,-1.3 -1,-0.1 -5,-0.3 -2,-0.1 0.732 96.8 36.7 -67.6 -23.1 10.1 9.7 13.6 61 386 A Q T 3 S+ 0 0 134 -4,-0.2 -1,-0.3 -3,-0.1 2,-0.2 0.370 98.2 103.1-108.2 4.5 12.7 10.5 11.0 62 387 A E S < S- 0 0 97 -3,-1.2 2,-0.8 7,-0.1 7,-0.6 -0.552 74.6-120.0 -87.8 151.7 12.5 7.2 9.1 63 388 A M E +D 68 0B 120 -2,-0.2 2,-0.4 5,-0.2 5,-0.2 -0.835 41.0 171.7 -87.2 109.6 10.8 6.5 5.8 64 389 A N E > S-D 67 0B 22 3,-3.1 3,-1.6 -2,-0.8 -42,-0.0 -0.989 71.0 -5.0-123.0 126.7 8.2 3.8 6.6 65 390 A F T 3 S- 0 0 52 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.782 131.7 -60.3 61.2 24.6 5.6 2.9 4.0 66 391 A G T 3 S+ 0 0 60 1,-0.2 2,-0.3 -53,-0.1 -1,-0.3 0.685 121.0 100.5 73.7 19.9 7.2 5.7 1.9 67 392 A K E < S-D 64 0B 73 -3,-1.6 -3,-3.1 -54,-0.0 2,-1.0 -0.972 76.1-128.3-134.8 147.5 6.2 8.2 4.7 68 393 A K E -D 63 0B 97 -2,-0.3 -5,-0.2 -5,-0.2 -8,-0.1 -0.863 49.5-136.8 -87.0 103.5 7.8 10.1 7.6 69 394 A L - 0 0 6 -2,-1.0 2,-0.7 -7,-0.6 -58,-0.2 -0.336 4.0-123.6 -68.7 146.1 5.1 9.0 10.1 70 395 A I E -B 10 0A 98 -60,-2.1 -60,-2.6 2,-0.0 2,-0.4 -0.833 38.6-172.1 -83.4 114.6 3.5 11.3 12.6 71 396 A L E +B 9 0A 15 -2,-0.7 2,-0.3 -62,-0.2 -62,-0.2 -0.951 13.9 150.2-119.2 133.6 4.2 9.5 15.9 72 397 A E E -B 8 0A 112 -64,-1.8 -64,-3.0 -2,-0.4 2,-0.5 -0.980 51.6 -93.3-154.9 158.2 2.9 10.5 19.3 73 398 A V E -B 7 0A 45 -2,-0.3 -66,-0.2 -66,-0.2 2,-0.2 -0.691 50.1-134.5 -73.1 121.5 1.8 9.1 22.7 74 399 A S - 0 0 23 -68,-3.0 -68,-0.4 -2,-0.5 -70,-0.2 -0.528 18.0-160.4 -78.8 149.5 -1.9 8.5 22.4 75 400 A S + 0 0 120 -2,-0.2 2,-0.2 -71,-0.1 -1,-0.1 0.369 61.7 107.3 -99.8 -0.6 -4.4 9.5 25.0 76 401 A S + 0 0 48 1,-0.1 -2,-0.1 -70,-0.1 -70,-0.1 -0.572 38.6 175.7 -84.5 142.9 -7.0 7.0 23.7 77 402 A N 0 0 111 -2,-0.2 -1,-0.1 1,-0.1 -74,-0.0 0.136 360.0 360.0-118.1 10.4 -8.1 3.7 25.4 78 403 A A 0 0 106 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.632 360.0 360.0 -79.6 360.0 -10.8 2.9 22.8