==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 05-AUG-10 2XNR . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR B.M.LUNDE,M.HORNER,A.MEINHART . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4898.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 25.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 328 A M 0 0 189 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.5 23.4 16.3 6.6 2 329 A K + 0 0 111 70,-0.3 48,-0.2 1,-0.1 44,-0.1 0.577 360.0 110.7 72.3 12.1 20.3 15.3 8.6 3 330 A S + 0 0 18 41,-0.1 41,-2.9 47,-0.1 2,-0.4 0.320 55.4 87.1-100.8 11.3 18.1 15.7 5.5 4 331 A R E -A 43 0A 72 68,-0.3 68,-2.7 39,-0.2 2,-0.4 -0.915 65.6-146.1-113.3 134.1 17.4 11.9 5.1 5 332 A L E -AB 42 71A 0 37,-3.0 37,-2.4 -2,-0.4 2,-0.4 -0.831 10.6-148.8 -96.2 133.5 14.5 10.1 6.8 6 333 A F E -AB 41 70A 51 64,-3.1 64,-2.3 -2,-0.4 2,-0.5 -0.861 6.5-164.8-100.0 135.0 14.9 6.5 7.9 7 334 A I E -AB 40 69A 0 33,-2.7 33,-2.6 -2,-0.4 3,-0.3 -0.990 4.8-173.0-118.2 122.4 12.0 4.1 8.0 8 335 A G + 0 0 16 60,-2.0 61,-0.1 -2,-0.5 30,-0.1 0.551 69.6 36.3 -96.6 -11.0 12.8 1.0 10.0 9 336 A N + 0 0 39 59,-0.4 -1,-0.2 28,-0.1 30,-0.2 -0.207 64.3 159.4-145.5 48.6 9.9 -1.4 9.6 10 337 A L - 0 0 1 28,-3.0 5,-0.1 -3,-0.3 53,-0.1 -0.394 54.2 -94.8 -63.1 147.5 8.4 -1.4 6.1 11 338 A P - 0 0 33 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.313 33.1-125.7 -53.3 151.9 6.4 -4.5 5.1 12 339 A L S S+ 0 0 117 -3,-0.1 2,-0.3 2,-0.1 3,-0.1 0.547 87.8 29.7 -85.9 -10.9 8.7 -6.9 3.2 13 340 A K S S+ 0 0 177 1,-0.1 3,-0.1 25,-0.0 -1,-0.0 -0.962 107.0 32.6-139.1 161.9 6.3 -7.1 0.2 14 341 A N S S+ 0 0 159 -2,-0.3 2,-0.4 1,-0.2 -1,-0.1 0.869 79.4 126.2 63.1 41.3 3.8 -4.9 -1.6 15 342 A V - 0 0 32 -3,-0.1 2,-0.3 -4,-0.1 -1,-0.2 -0.996 36.9-170.9-128.4 123.5 5.5 -1.5 -0.8 16 343 A S > - 0 0 48 -2,-0.4 4,-1.7 1,-0.1 3,-0.2 -0.792 36.9-119.2-111.1 161.4 6.4 0.9 -3.7 17 344 A K H > S+ 0 0 115 -2,-0.3 4,-2.8 1,-0.2 5,-0.1 0.875 118.1 57.8 -59.6 -37.0 8.4 4.1 -3.8 18 345 A E H > S+ 0 0 123 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.878 101.3 54.1 -62.1 -39.2 5.2 5.7 -4.9 19 346 A D H > S+ 0 0 50 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.938 112.3 44.8 -54.8 -49.8 3.5 4.6 -1.7 20 347 A L H X S+ 0 0 0 -4,-1.7 4,-2.6 1,-0.2 5,-0.3 0.896 110.8 54.0 -66.0 -39.9 6.3 6.2 0.3 21 348 A F H X S+ 0 0 99 -4,-2.8 4,-2.7 1,-0.2 -1,-0.2 0.925 107.0 50.9 -57.8 -46.0 6.1 9.3 -1.9 22 349 A R H < S+ 0 0 147 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.879 114.3 44.6 -61.0 -37.5 2.4 9.7 -1.3 23 350 A I H < S+ 0 0 25 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.917 125.3 28.5 -71.3 -44.3 2.9 9.5 2.5 24 351 A F H >< S+ 0 0 0 -4,-2.6 3,-1.8 1,-0.2 4,-0.4 0.628 92.2 88.0-104.0 -13.9 6.0 11.8 2.8 25 352 A S G >< S+ 0 0 39 -4,-2.7 3,-1.0 -5,-0.3 -1,-0.2 0.781 78.8 68.9 -56.1 -29.5 5.7 14.3 -0.1 26 353 A P G 3 S+ 0 0 96 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.765 94.9 59.4 -60.2 -21.8 3.6 16.7 2.1 27 354 A Y G < S- 0 0 42 -3,-1.8 2,-0.3 1,-0.2 -2,-0.2 0.635 120.9 -55.1 -86.1 -15.1 6.7 17.4 4.3 28 355 A G S < S- 0 0 21 -3,-1.0 2,-0.6 -4,-0.4 -1,-0.2 -0.949 76.4 -42.3 163.5-177.0 9.0 18.7 1.6 29 356 A H - 0 0 135 -2,-0.3 16,-1.0 -3,-0.1 2,-0.5 -0.656 52.6-145.7 -81.0 117.7 10.6 18.1 -1.8 30 357 A I E -C 44 0A 29 -2,-0.6 14,-0.3 14,-0.2 3,-0.1 -0.755 18.8-179.4 -87.8 126.5 11.8 14.5 -2.0 31 358 A M E + 0 0 116 12,-3.4 2,-0.3 -2,-0.5 13,-0.2 0.740 67.1 2.4 -93.6 -31.2 15.0 14.0 -4.0 32 359 A Q E -C 43 0A 99 11,-1.2 11,-2.8 2,-0.0 2,-0.4 -0.977 53.5-158.6-159.7 144.5 15.4 10.3 -3.8 33 360 A I E -C 42 0A 18 -2,-0.3 2,-0.4 9,-0.2 9,-0.2 -0.999 13.6-178.7-128.8 124.4 13.6 7.2 -2.3 34 361 A N E -C 41 0A 55 7,-2.6 7,-2.7 -2,-0.4 2,-0.4 -0.982 7.0-166.4-121.7 137.2 15.5 3.9 -1.6 35 362 A I E +C 40 0A 57 -2,-0.4 2,-0.4 5,-0.2 5,-0.2 -0.992 8.9 177.4-121.2 127.9 13.9 0.7 -0.2 36 363 A K E > -C 39 0A 144 3,-3.5 3,-2.3 -2,-0.4 2,-0.2 -0.807 62.9 -77.4-129.1 88.0 16.1 -2.1 1.1 37 364 A N T 3 S+ 0 0 104 -2,-0.4 -1,-0.2 1,-0.3 -28,-0.1 -0.389 119.2 1.4 56.2-117.1 13.6 -4.7 2.4 38 365 A A T 3 S+ 0 0 24 -2,-0.2 -28,-3.0 -3,-0.1 2,-0.5 0.622 121.9 85.3 -71.4 -12.7 12.3 -3.4 5.8 39 366 A F E < - C 0 36A 99 -3,-2.3 -3,-3.5 -30,-0.2 2,-0.4 -0.783 56.3-172.5-101.4 131.8 14.4 -0.3 5.5 40 367 A G E -AC 7 35A 0 -33,-2.6 -33,-2.7 -2,-0.5 2,-0.4 -0.917 4.5-166.3-117.7 146.3 13.3 2.9 3.7 41 368 A F E -AC 6 34A 33 -7,-2.7 -7,-2.6 -2,-0.4 2,-0.6 -0.975 2.7-173.2-133.5 120.4 15.4 6.0 3.0 42 369 A I E -AC 5 33A 0 -37,-2.4 -37,-3.0 -2,-0.4 2,-0.7 -0.948 10.7-154.9-118.5 114.0 13.8 9.2 1.9 43 370 A Q E -AC 4 32A 42 -11,-2.8 -12,-3.4 -2,-0.6 -11,-1.2 -0.791 15.5-177.8 -91.1 113.8 16.2 12.0 0.9 44 371 A F E - C 0 30A 2 -41,-2.9 -14,-0.2 -2,-0.7 -41,-0.1 -0.471 37.4-114.1 -93.7 176.3 14.6 15.5 1.3 45 372 A D S S+ 0 0 85 -16,-1.0 -15,-0.1 -2,-0.2 -41,-0.1 0.302 94.8 25.1 -93.8 8.6 16.4 18.8 0.4 46 373 A N S > S- 0 0 50 -43,-0.3 4,-0.6 -17,-0.2 3,-0.2 -0.977 74.4-118.0-163.9 159.1 16.5 20.0 4.0 47 374 A P H > S+ 0 0 46 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.710 104.3 66.7 -76.7 -24.3 16.5 18.7 7.7 48 375 A Q H > S+ 0 0 87 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.894 95.8 57.2 -64.9 -39.1 13.3 20.4 8.8 49 376 A S H > S+ 0 0 6 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.881 105.8 50.8 -56.3 -40.2 11.2 18.2 6.4 50 377 A V H X S+ 0 0 0 -4,-0.6 4,-2.2 -48,-0.2 -1,-0.2 0.928 111.3 47.1 -65.0 -46.5 12.7 15.1 8.2 51 378 A R H X S+ 0 0 108 -4,-1.8 4,-2.6 1,-0.2 -2,-0.2 0.925 112.8 49.3 -61.1 -43.4 11.8 16.4 11.6 52 379 A D H X S+ 0 0 64 -4,-2.9 4,-2.6 1,-0.2 5,-0.4 0.899 109.9 51.8 -63.7 -41.4 8.3 17.3 10.5 53 380 A A H X S+ 0 0 0 -4,-2.3 4,-2.4 -5,-0.2 5,-0.4 0.916 111.7 46.3 -61.5 -44.5 7.8 13.8 8.9 54 381 A I H X S+ 0 0 24 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.931 114.5 47.6 -64.1 -45.1 8.9 12.1 12.2 55 382 A E H < S+ 0 0 132 -4,-2.6 4,-0.3 -5,-0.2 -2,-0.2 0.901 123.6 29.9 -66.7 -40.5 6.6 14.4 14.3 56 383 A C H >< S+ 0 0 56 -4,-2.6 3,-0.8 -5,-0.2 -2,-0.2 0.901 121.6 45.0 -87.5 -43.5 3.5 14.0 12.2 57 384 A E H >< S+ 0 0 23 -4,-2.4 3,-1.4 -5,-0.4 10,-0.3 0.701 97.8 70.4 -81.6 -17.5 3.7 10.6 10.6 58 385 A S T 3< S+ 0 0 51 -4,-1.3 -1,-0.2 -5,-0.4 -2,-0.1 0.822 99.0 53.3 -63.8 -25.8 4.8 8.8 13.8 59 386 A Q T < S+ 0 0 155 -3,-0.8 -1,-0.2 -4,-0.3 2,-0.2 0.383 102.2 79.5 -84.4 -3.5 1.2 9.4 14.9 60 387 A E S < S- 0 0 101 -3,-1.4 2,-0.5 7,-0.1 7,-0.5 -0.688 78.1-120.0-109.9 159.5 -0.3 7.8 11.8 61 388 A M + 0 0 117 -2,-0.2 2,-0.4 5,-0.1 5,-0.2 -0.872 33.3 174.9 -95.1 130.5 -1.0 4.3 10.5 62 389 A N B > +D 65 0B 23 3,-2.7 3,-1.4 -2,-0.5 -2,-0.0 -0.999 69.5 1.0-136.6 135.5 0.8 3.5 7.3 63 390 A F T 3 S- 0 0 63 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.830 130.5 -62.8 55.5 32.6 0.7 0.0 5.6 64 391 A G T 3 S+ 0 0 72 1,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.667 121.4 79.4 69.8 19.1 -1.5 -1.1 8.5 65 392 A K B < S-D 62 0B 68 -3,-1.4 -3,-2.7 -54,-0.0 2,-0.7 -0.892 86.8 -97.6-145.8 171.9 1.2 -0.4 11.1 66 393 A K - 0 0 151 -2,-0.3 2,-0.2 -5,-0.2 -5,-0.1 -0.892 46.3-137.0 -96.0 115.6 3.0 2.2 13.1 67 394 A L - 0 0 9 -2,-0.7 2,-0.7 -7,-0.5 -7,-0.1 -0.480 7.4-126.2 -78.0 139.9 6.2 3.1 11.2 68 395 A I - 0 0 62 -2,-0.2 -60,-2.0 2,-0.0 2,-0.4 -0.797 36.9-175.9 -77.2 113.9 9.6 3.5 12.9 69 396 A L E +B 7 0A 6 -2,-0.7 2,-0.3 -62,-0.2 -62,-0.2 -0.985 10.7 154.0-125.0 126.3 10.6 7.0 11.7 70 397 A E E -B 6 0A 105 -64,-2.3 -64,-3.1 -2,-0.4 2,-0.4 -0.937 52.0 -88.6-145.0 160.8 14.0 8.5 12.5 71 398 A V E -B 5 0A 66 -2,-0.3 -66,-0.2 -66,-0.2 2,-0.2 -0.668 59.1-113.8 -68.6 128.9 16.7 10.9 11.3 72 399 A S + 0 0 13 -68,-2.7 -70,-0.3 -2,-0.4 -68,-0.3 -0.480 35.0 179.6 -74.3 136.3 18.9 8.8 9.1 73 400 A S + 0 0 111 -2,-0.2 2,-0.2 2,-0.1 -1,-0.1 0.359 41.4 126.8-108.6 -1.1 22.4 8.1 10.2 74 401 A S 0 0 62 1,-0.1 -2,-0.1 -70,-0.1 -70,-0.0 -0.389 360.0 360.0 -71.8 129.3 23.3 6.0 7.2 75 402 A N 0 0 205 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.274 360.0 360.0 -94.7 360.0 26.4 6.8 5.2