==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER BIOSYNTHETIC PROTEIN 23-NOV-04 1Y2Y . COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN NOP10; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.KHANNA,H.WU,C.JOHANSSON,M.CAIZERGUES-FERRER,J.FEIGON . 58 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4787.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 25.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 239 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 56.7 15.3 -1.3 -11.7 2 2 A H + 0 0 144 15,-0.1 15,-0.1 16,-0.0 14,-0.0 -0.258 360.0 60.2 -88.9 179.2 12.3 -0.3 -9.5 3 3 A L - 0 0 73 -2,-0.1 2,-0.3 1,-0.1 14,-0.3 0.773 64.2-147.4 67.9 117.2 8.7 0.2 -10.5 4 4 A M B -A 16 0A 39 12,-0.8 12,-1.5 10,-0.1 2,-0.4 -0.813 3.5-147.1-116.1 157.0 6.8 -2.7 -11.9 5 5 A Y - 0 0 138 -2,-0.3 2,-0.4 10,-0.2 9,-0.2 -0.980 11.6-158.4-125.6 133.8 4.0 -3.0 -14.4 6 6 A T - 0 0 29 -2,-0.4 8,-3.3 8,-0.3 6,-0.9 -0.916 18.3-175.8-118.5 142.6 1.2 -5.7 -14.4 7 7 A L + 0 0 94 -2,-0.4 -1,-0.0 4,-0.2 -2,-0.0 -0.436 54.2 107.1-124.8 51.8 -1.0 -7.0 -17.2 8 8 A G S S+ 0 0 58 3,-0.0 -1,-0.1 23,-0.0 22,-0.0 0.885 81.4 23.8 -94.8 -80.1 -3.3 -9.3 -15.2 9 9 A P S S- 0 0 72 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.838 150.1 -0.5 -58.0 -34.1 -6.9 -8.1 -14.6 10 10 A D S S- 0 0 122 -4,-0.1 -3,-0.1 0, 0.0 0, 0.0 0.639 92.8-119.0-117.4 -78.6 -6.6 -5.9 -17.7 11 11 A G S S+ 0 0 44 -5,-0.4 -4,-0.2 0, 0.0 -3,-0.0 0.552 71.7 95.8 127.2 72.2 -3.3 -6.1 -19.5 12 12 A K S S- 0 0 131 -6,-0.9 -5,-0.2 0, 0.0 -7,-0.1 0.359 93.8 -63.1-141.3 -75.3 -1.5 -2.8 -19.7 13 13 A R - 0 0 118 -7,-0.6 -6,-0.2 -9,-0.1 3,-0.1 0.115 43.1-151.9 175.0 47.3 1.2 -2.0 -17.1 14 14 A I - 0 0 3 -8,-3.3 -8,-0.3 -9,-0.2 2,-0.2 -0.056 26.9-134.3 -36.6 101.2 -0.2 -1.7 -13.6 15 15 A Y + 0 0 74 -10,-0.2 2,-0.2 25,-0.2 -10,-0.2 -0.431 48.2 124.1 -68.1 135.5 2.3 0.7 -12.2 16 16 A T B -A 4 0A 7 -12,-1.5 -12,-0.8 -2,-0.2 2,-0.3 -0.858 42.2-121.6-164.8-162.8 3.6 -0.1 -8.8 17 17 A L - 0 0 35 -14,-0.3 5,-0.1 -2,-0.2 -15,-0.1 -0.973 10.1-160.2-155.7 165.9 6.8 -0.8 -6.8 18 18 A K + 0 0 123 -2,-0.3 4,-0.4 3,-0.1 -1,-0.1 0.575 60.1 106.4-122.5 -25.5 8.6 -3.3 -4.6 19 19 A K S > S- 0 0 123 2,-0.2 3,-0.8 1,-0.1 -2,-0.1 0.106 98.3 -75.0 -49.7 171.8 11.1 -1.2 -2.7 20 20 A V T 3 S+ 0 0 144 1,-0.3 2,-1.4 2,-0.0 -1,-0.1 0.863 136.9 51.0 -36.8 -52.0 10.5 -0.5 1.0 21 21 A T T 3 S+ 0 0 39 30,-0.0 30,-0.9 1,-0.0 2,-0.9 -0.400 77.7 149.1 -88.8 58.9 7.8 2.0 0.0 22 22 A E < - 0 0 57 -2,-1.4 28,-0.1 -3,-0.8 -4,-0.1 -0.814 65.7 -59.8 -98.0 101.7 6.0 -0.4 -2.3 23 23 A S S S- 0 0 8 -2,-0.9 28,-0.1 5,-0.1 -1,-0.1 0.178 71.0 -86.6 50.3-179.6 2.3 0.4 -2.2 24 24 A G S S- 0 0 12 -3,-0.1 30,-0.1 26,-0.1 27,-0.1 0.152 81.7 -27.5 -98.6-143.9 0.3 0.3 1.0 25 25 A E S S+ 0 0 113 2,-0.0 32,-0.1 3,-0.0 29,-0.0 0.868 121.0 77.9 -36.1 -53.3 -1.5 -2.5 2.8 26 26 A I S S- 0 0 10 1,-0.1 3,-0.1 10,-0.0 4,-0.1 -0.105 98.3-112.5 -56.1 159.4 -2.0 -4.3 -0.5 27 27 A T S S- 0 0 94 1,-0.2 -1,-0.1 2,-0.1 2,-0.1 0.850 83.8 -53.7 -63.3 -33.4 0.9 -6.1 -2.0 28 28 A K S S- 0 0 49 1,-0.6 -1,-0.2 2,-0.1 -12,-0.1 -0.281 82.4 -52.7 153.4 119.0 1.0 -3.5 -4.8 29 29 A S S S+ 0 0 0 -3,-0.1 -1,-0.6 -2,-0.1 11,-0.1 0.148 94.1 84.9 31.1-148.6 -1.6 -2.1 -7.2 30 30 A A S S- 0 0 23 9,-0.5 9,-0.2 -15,-0.1 -2,-0.1 0.232 91.4 -68.4 48.6 176.8 -3.3 -4.9 -9.2 31 31 A H - 0 0 71 1,-0.1 4,-0.1 8,-0.1 -1,-0.1 -0.829 28.6-162.7-104.9 140.7 -6.3 -6.7 -7.7 32 32 A P S S- 0 0 66 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.576 80.6 -55.3 -93.1 -13.7 -6.2 -9.1 -4.8 33 33 A A S S+ 0 0 88 1,-0.1 2,-0.3 0, 0.0 -2,-0.1 0.098 121.6 23.3 161.1 -24.8 -9.6 -10.6 -5.6 34 34 A R S S- 0 0 172 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.955 102.0 -68.6-163.5 143.1 -12.0 -7.7 -5.7 35 35 A F S S+ 0 0 164 -2,-0.3 3,-0.1 1,-0.2 -4,-0.1 -0.038 90.5 108.1 -35.7 99.2 -11.8 -3.9 -6.3 36 36 A S + 0 0 33 1,-0.3 -1,-0.2 20,-0.0 -5,-0.1 0.379 53.2 62.1-141.5 -71.3 -10.0 -2.9 -3.1 37 37 A P S S- 0 0 1 0, 0.0 -1,-0.3 0, 0.0 4,-0.1 -0.167 92.8 -99.1 -64.4 160.5 -6.4 -1.8 -3.5 38 38 A D > - 0 0 12 1,-0.2 3,-1.0 2,-0.1 -8,-0.1 0.918 40.6-159.7 -44.3 -53.5 -5.4 1.2 -5.4 39 39 A D T 3 - 0 0 1 1,-0.3 -9,-0.5 -9,-0.2 -1,-0.2 0.577 66.5 -68.4 80.5 7.7 -4.4 -1.0 -8.3 40 40 A K T 3 S+ 0 0 37 12,-0.2 -1,-0.3 -11,-0.1 4,-0.2 0.567 115.5 116.8 84.1 9.6 -2.3 1.8 -9.6 41 41 A Y < + 0 0 110 -3,-1.0 -2,-0.1 1,-0.2 -1,-0.0 -0.067 38.7 99.3 -99.8 31.7 -5.6 3.7 -10.3 42 42 A S S S- 0 0 48 4,-0.0 4,-0.2 0, 0.0 -1,-0.2 -0.113 99.8-100.4-107.8 34.4 -4.9 6.5 -7.8 43 43 A R > - 0 0 215 -3,-0.2 3,-0.7 2,-0.1 -2,-0.1 0.893 42.0-123.1 46.2 102.6 -3.7 8.9 -10.4 44 44 A Q T 3 S+ 0 0 100 -4,-0.2 3,-0.1 1,-0.2 8,-0.1 -0.138 90.6 52.1 -66.9 167.3 0.1 8.9 -10.4 45 45 A R T 3 S+ 0 0 231 1,-0.4 -1,-0.2 0, 0.0 2,-0.2 0.345 91.4 107.5 85.5 -6.5 2.2 12.1 -9.8 46 46 A V S X S+ 0 0 78 -3,-0.7 3,-2.0 -4,-0.2 2,-1.2 -0.494 74.1 6.8 -98.9 170.5 0.1 12.7 -6.7 47 47 A T T 3 S- 0 0 94 1,-0.2 4,-0.1 -2,-0.2 5,-0.1 -0.428 128.6 -46.6 62.7 -94.3 1.1 12.4 -3.0 48 48 A L T 3 S- 0 0 141 -2,-1.2 -1,-0.2 2,-0.3 3,-0.1 0.139 77.3 -92.6-159.1 22.7 4.8 11.7 -3.3 49 49 A K S < S+ 0 0 157 -3,-2.0 2,-0.4 1,-0.3 -2,-0.1 0.494 92.5 123.8 72.9 1.8 5.1 9.1 -6.0 50 50 A K S S- 0 0 105 -4,-0.2 -2,-0.3 -28,-0.1 3,-0.3 -0.792 71.8 -23.9 -98.8 137.5 5.0 6.5 -3.2 51 51 A R S S- 0 0 127 -30,-0.9 -3,-0.2 -2,-0.4 -2,-0.1 0.215 73.6-101.8 50.1 175.9 2.4 3.7 -3.1 52 52 A F - 0 0 23 -8,-0.1 -1,-0.2 -5,-0.1 -12,-0.2 0.057 68.2 -75.1-121.6 26.4 -0.9 4.2 -5.0 53 53 A G - 0 0 48 -3,-0.3 -2,-0.1 -13,-0.1 -6,-0.0 0.114 63.7-137.0 106.3 -22.6 -3.2 5.1 -2.2 54 54 A L + 0 0 30 -30,-0.1 3,-0.1 1,-0.1 -31,-0.0 0.272 28.1 178.2 52.5 170.6 -3.6 1.6 -0.6 55 55 A V + 0 0 83 -18,-0.1 2,-4.7 -17,-0.0 -1,-0.1 0.156 54.1 90.0-166.9 -59.2 -6.9 0.2 0.5 56 56 A P + 0 0 44 0, 0.0 -2,-0.0 0, 0.0 -20,-0.0 -0.172 66.8 165.8 -56.0 60.2 -6.9 -3.4 1.9 57 57 A G 0 0 42 -2,-4.7 -3,-0.0 -32,-0.1 -33,-0.0 0.007 360.0 360.0 -72.0-177.6 -6.3 -1.9 5.3 58 58 A Q 0 0 251 0, 0.0 -33,-0.0 0, 0.0 -1,-0.0 -0.899 360.0 360.0-159.1 360.0 -6.5 -3.6 8.7