==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT (HEME PROTEIN) 29-JAN-91 2YCC . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.M.BERGHUIS,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6629.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 176 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 78.0 3.2 10.6 -9.0 2 -4 A E + 0 0 171 1,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.267 360.0 68.5-137.2 44.1 0.5 11.7 -6.6 3 -3 A F - 0 0 24 67,-0.0 2,-0.4 2,-0.0 -1,-0.1 -0.707 56.4-171.2-164.6 113.1 1.4 15.3 -5.8 4 -2 A K - 0 0 162 -2,-0.2 2,-0.2 -3,-0.1 97,-0.1 -0.883 33.1-104.0-115.0 141.7 1.3 18.2 -8.2 5 -1 A A - 0 0 79 -2,-0.4 93,-0.2 1,-0.1 92,-0.1 -0.411 40.5-178.7 -62.7 127.8 2.6 21.6 -7.5 6 1 A G - 0 0 33 91,-0.5 2,-0.4 -2,-0.2 -1,-0.1 0.107 43.9 -42.1-100.0-146.3 0.0 24.2 -6.6 7 2 A S > - 0 0 47 1,-0.2 4,-2.7 -2,-0.1 95,-0.3 -0.771 32.2-155.9 -95.2 132.0 0.5 28.0 -5.9 8 3 A A H > S+ 0 0 28 -2,-0.4 4,-2.1 2,-0.2 -1,-0.2 0.982 102.2 47.1 -64.5 -58.6 3.3 29.3 -3.7 9 4 A K H > S+ 0 0 173 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.852 112.3 51.3 -49.1 -41.7 1.3 32.4 -2.9 10 5 A K H >> S+ 0 0 119 1,-0.2 3,-1.6 2,-0.2 4,-1.0 0.988 111.0 47.3 -59.5 -55.9 -1.7 30.2 -2.2 11 6 A G H 3X S+ 0 0 0 -4,-2.7 4,-2.2 87,-0.3 3,-0.4 0.768 101.2 65.6 -50.7 -41.4 0.4 28.1 0.1 12 7 A A H 3X S+ 0 0 21 -4,-2.1 4,-0.9 1,-0.2 -1,-0.3 0.546 104.9 44.6 -55.5 -28.6 1.9 31.1 2.0 13 8 A T H S+ 0 0 6 -4,-2.2 4,-3.0 2,-0.3 5,-2.0 0.926 114.3 41.2 -51.7 -51.6 0.5 28.4 6.2 16 11 A K H X5S+ 0 0 120 -4,-0.9 4,-0.6 3,-0.2 5,-0.4 0.984 123.7 39.1 -58.9 -59.5 -0.1 31.8 7.9 17 12 A T H <5S+ 0 0 119 -4,-2.9 -2,-0.3 1,-0.2 -3,-0.2 0.808 132.8 24.3 -64.1 -31.0 -3.8 30.8 8.5 18 13 A R H <5S+ 0 0 86 -4,-5.8 -3,-0.2 2,-0.0 -2,-0.2 0.575 131.0 19.7-118.4 -8.5 -3.0 27.2 9.4 19 14 A C H >X5S+ 0 0 21 -4,-3.0 4,-1.1 -5,-0.2 3,-1.0 0.423 97.7 82.2-138.3 -19.2 0.5 26.5 10.7 20 15 A L T 3< S- 0 0 96 12,-0.1 3,-2.0 1,-0.1 12,-0.2 -0.581 79.1-109.4 -75.5 132.0 12.7 30.3 8.5 27 22 A K T 3 S+ 0 0 168 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.1 -0.287 111.6 19.4 -58.9 126.9 16.3 29.1 9.1 28 23 A G T 3 S+ 0 0 79 1,-0.4 -1,-0.3 10,-0.1 -2,-0.1 0.671 99.9 132.5 83.7 12.1 17.4 30.4 12.5 29 24 A G < - 0 0 16 -3,-2.0 -1,-0.4 1,-0.1 7,-0.2 -0.554 59.5 -92.7 -92.6 154.4 13.7 30.9 13.2 30 25 A P - 0 0 74 0, 0.0 2,-0.4 0, 0.0 -6,-0.3 -0.336 18.1-120.2 -82.1 156.9 12.4 29.7 16.5 31 26 A H + 0 0 63 4,-0.1 -8,-0.1 -2,-0.1 2,-0.1 -0.801 43.4 162.5 -84.6 140.6 10.9 26.5 17.9 32 27 A K - 0 0 88 2,-2.5 -9,-0.1 -10,-0.5 -10,-0.1 0.128 65.1 -34.0-128.6-122.7 7.4 27.4 19.3 33 28 A V S S+ 0 0 101 -12,-0.3 -10,-0.1 -2,-0.1 -11,-0.1 0.974 142.6 22.8 -67.4 -56.5 4.6 24.9 20.1 34 29 A G S S- 0 0 7 -12,-2.2 -2,-2.5 1,-0.1 3,-0.1 -0.647 110.6 -91.0 -96.7 168.5 5.6 22.8 17.2 35 30 A P - 0 0 15 0, 0.0 -11,-0.3 0, 0.0 2,-0.3 -0.157 41.8 -88.8 -78.7 165.4 9.2 23.1 16.0 36 31 A N - 0 0 13 -7,-0.2 -11,-0.2 -13,-0.2 -5,-0.1 -0.601 35.7-153.3 -77.8 144.5 10.7 25.3 13.4 37 32 A L > + 0 0 24 -13,-3.1 3,-2.5 -2,-0.3 -12,-0.2 0.439 40.8 140.9 -95.4 1.3 10.4 23.4 10.1 38 33 A H T 3 S+ 0 0 45 1,-0.3 70,-0.1 -14,-0.3 -12,-0.1 -0.241 80.5 10.7 -55.9 127.7 13.4 25.0 8.1 39 34 A G T 3 S+ 0 0 24 68,-1.8 4,-0.3 -14,-0.2 -1,-0.3 0.653 82.7 142.9 79.1 24.4 15.0 22.2 6.2 40 35 A I X + 0 0 9 -3,-2.5 3,-1.4 -15,-0.1 24,-0.3 0.850 42.1 95.2 -59.3 -35.8 12.2 19.7 6.9 41 36 A F T 3 S+ 0 0 57 1,-0.2 24,-0.2 -4,-0.2 3,-0.1 -0.434 96.0 10.6 -68.7 123.6 12.5 18.2 3.4 42 37 A G T 3 S+ 0 0 47 22,-4.1 -1,-0.2 1,-0.4 2,-0.2 0.106 104.8 110.3 98.4 -19.8 14.7 15.1 3.3 43 38 A R < - 0 0 67 -3,-1.4 21,-2.8 -4,-0.3 -1,-0.4 -0.577 69.1-119.1 -90.4 152.6 14.9 14.9 7.1 44 39 A H B > -A 63 0A 83 19,-0.3 3,-0.6 -2,-0.2 19,-0.3 -0.576 43.4 -84.6 -84.8 147.9 13.3 12.2 9.2 45 40 A S T 3 S+ 0 0 1 17,-2.4 16,-0.2 -2,-0.3 -1,-0.1 -0.335 107.0 28.0 -63.1 140.1 10.7 13.1 11.7 46 41 A G T 3 S+ 0 0 10 -2,-0.1 -1,-0.2 15,-0.1 7,-0.1 0.736 80.2 114.1 84.3 31.5 11.9 14.1 15.2 47 42 A Q < + 0 0 131 -3,-0.6 2,-0.3 2,-0.1 -2,-0.1 0.558 30.4 116.7-112.0 -3.2 15.4 15.6 14.5 48 43 A A > - 0 0 14 1,-0.1 3,-0.9 2,-0.1 2,-0.4 -0.558 64.4-133.3 -63.3 120.0 15.1 19.3 15.4 49 44 A E T 3 S+ 0 0 187 -2,-0.3 3,-0.1 1,-0.2 -1,-0.1 -0.655 87.8 34.3 -83.6 132.3 17.5 19.8 18.3 50 45 A G T 3 S+ 0 0 78 -2,-0.4 2,-0.4 1,-0.3 -1,-0.2 0.443 96.3 107.9 100.6 13.2 16.0 21.8 21.2 51 46 A Y < - 0 0 41 -3,-0.9 2,-1.2 -5,-0.1 -1,-0.3 -0.950 64.7-141.7-123.4 136.3 12.5 20.4 20.7 52 47 A S - 0 0 99 -2,-0.4 2,-0.1 -3,-0.1 3,-0.1 -0.655 29.2-176.2 -99.5 83.8 10.7 17.9 22.9 53 48 A Y - 0 0 33 -2,-1.2 -19,-0.0 -5,-0.2 30,-0.0 -0.441 32.2-101.0 -70.6 140.7 8.9 15.9 20.3 54 49 A T >> - 0 0 35 -2,-0.1 4,-1.3 1,-0.1 3,-0.8 -0.282 30.6-107.9 -63.6 162.5 6.6 13.1 21.6 55 50 A D H 3> S+ 0 0 115 1,-0.3 4,-1.9 2,-0.2 5,-0.2 0.866 118.9 63.0 -54.2 -46.0 7.8 9.5 21.6 56 51 A A H 3> S+ 0 0 21 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.800 99.7 51.2 -49.4 -48.0 5.4 8.9 18.8 57 52 A N H X> S+ 0 0 15 -3,-0.8 4,-1.5 1,-0.2 3,-1.2 0.979 110.1 47.5 -51.4 -69.2 7.2 11.3 16.5 58 53 A I H 3< S+ 0 0 71 -4,-1.3 -2,-0.2 1,-0.3 -1,-0.2 0.781 112.9 46.9 -36.4 -55.1 10.6 9.8 16.9 59 54 A K H 3< S+ 0 0 138 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.697 102.7 63.9 -69.9 -27.0 9.6 6.2 16.5 60 55 A K H << S- 0 0 86 -4,-1.3 -2,-0.2 -3,-1.2 -1,-0.2 0.968 81.5-171.5 -57.8 -56.2 7.5 6.9 13.4 61 56 A N < - 0 0 77 -4,-1.5 2,-0.2 -16,-0.2 -3,-0.1 0.881 8.2-177.9 58.5 54.5 10.7 8.0 11.7 62 57 A V - 0 0 9 -5,-0.3 -17,-2.4 1,-0.0 2,-0.4 -0.543 25.8-129.9 -79.3 140.9 9.2 9.4 8.6 63 58 A L B -A 44 0A 67 -19,-0.3 2,-1.0 -2,-0.2 -19,-0.3 -0.739 28.8-125.3 -90.9 131.8 11.4 10.8 5.7 64 59 A W + 0 0 12 -21,-2.8 -22,-4.1 -2,-0.4 -21,-0.3 -0.699 52.8 131.7 -94.5 100.4 10.1 14.3 4.7 65 60 A D S > S- 0 0 65 -2,-1.0 4,-1.9 -24,-0.2 5,-0.1 -0.828 71.5 -88.1-133.8 164.0 9.3 14.8 1.1 66 61 A E T 4 S+ 0 0 85 -2,-0.3 34,-0.1 1,-0.2 35,-0.1 0.690 121.0 49.1 -48.3 -28.5 6.2 16.3 -0.6 67 62 A N T >> S+ 0 0 44 2,-0.2 4,-1.8 3,-0.1 3,-1.7 0.929 110.0 43.4 -84.9 -54.4 4.3 13.0 -0.7 68 63 A N H 3> S+ 0 0 29 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.967 113.6 58.8 -50.9 -50.4 4.6 11.6 2.9 69 64 A M H 3< S+ 0 0 11 -4,-1.9 4,-0.5 1,-0.2 -1,-0.3 0.545 101.4 53.0 -55.5 -20.1 3.9 15.2 3.9 70 65 A S H <> S+ 0 0 6 -3,-1.7 4,-1.5 2,-0.2 -1,-0.2 0.833 110.4 44.2 -92.8 -41.7 0.6 15.2 2.0 71 66 A E H >X S+ 0 0 97 -4,-1.8 3,-2.7 2,-0.2 4,-1.6 1.000 115.1 49.4 -62.9 -58.7 -0.8 12.0 3.7 72 67 A Y H 3< S+ 0 0 23 -4,-2.6 7,-0.2 1,-0.3 -1,-0.2 0.849 110.9 52.1 -38.9 -45.1 0.4 13.3 7.1 73 68 A L H 34 S+ 0 0 15 -4,-0.5 17,-1.8 -5,-0.3 -1,-0.3 0.752 101.1 61.2 -68.1 -27.0 -1.3 16.6 6.2 74 69 A T H << S- 0 0 57 -3,-2.7 -2,-0.2 -4,-1.5 -1,-0.2 0.916 136.1 -16.2 -65.7 -42.4 -4.5 14.7 5.4 75 70 A N X - 0 0 77 -4,-1.6 4,-2.2 14,-0.1 3,-0.3 -0.569 65.2-173.3-170.1 88.2 -4.7 13.5 9.0 76 71 A P H > S+ 0 0 0 0, 0.0 4,-3.5 0, 0.0 7,-0.2 0.888 87.0 51.0 -50.9 -61.3 -1.6 13.7 11.2 77 72 A X H 4 S+ 0 0 145 10,-0.5 6,-0.1 1,-0.3 11,-0.1 0.772 114.1 51.2 -51.7 -28.3 -2.8 11.9 14.3 78 73 A K H 4 S+ 0 0 165 -3,-0.3 -1,-0.3 -6,-0.2 -6,-0.1 0.928 111.9 42.4 -77.6 -46.2 -3.8 9.2 11.8 79 74 A Y H < S+ 0 0 59 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.1 0.899 135.6 20.1 -65.3 -43.0 -0.3 9.1 10.1 80 75 A I S >< S- 0 0 4 -4,-3.5 3,-2.5 -8,-0.1 2,-0.4 -0.754 77.2-162.6-129.1 78.8 1.4 9.3 13.5 81 76 A P T 3 S+ 0 0 104 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.446 84.1 43.9 -62.5 115.1 -1.0 8.2 16.4 82 77 A G T 3 S+ 0 0 50 -2,-0.4 -26,-0.2 1,-0.4 -25,-0.1 -0.107 82.2 133.8 138.1 -34.1 0.8 9.6 19.4 83 78 A T < - 0 0 7 -3,-2.5 -1,-0.4 -7,-0.2 -6,-0.1 0.039 54.9-144.5 -53.1 134.9 1.6 13.0 18.0 84 79 A K + 0 0 103 -3,-0.1 2,-0.8 2,-0.1 -1,-0.2 0.428 61.7 127.7 -83.5 12.7 1.0 16.0 20.0 85 80 A M - 0 0 42 1,-0.1 2,-1.3 2,-0.0 -8,-0.2 -0.614 48.9-158.6 -73.1 113.3 0.1 17.7 16.8 86 81 A A + 0 0 87 -2,-0.8 2,-0.3 -10,-0.1 -1,-0.1 -0.741 50.3 113.0 -91.3 88.9 -3.3 19.3 17.4 87 82 A F - 0 0 35 -2,-1.3 -10,-0.5 1,-0.1 3,-0.1 -0.869 58.5-150.5-164.3 124.3 -4.5 19.6 13.8 88 83 A G - 0 0 61 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.766 52.2-122.6 -66.8 -32.0 -7.3 17.8 12.1 89 84 A G - 0 0 8 -14,-0.2 2,-0.4 -3,-0.1 -1,-0.3 -0.791 28.9 -67.4 123.6-161.4 -5.4 18.1 8.8 90 85 A L - 0 0 9 -17,-1.8 6,-0.0 -2,-0.3 -3,-0.0 -0.985 37.9-158.0-131.6 110.4 -6.3 19.7 5.4 91 86 A K + 0 0 165 -2,-0.4 2,-0.4 4,-0.0 -17,-0.1 0.669 66.2 76.4 -65.5 -35.0 -9.1 17.7 3.6 92 87 A K > - 0 0 104 1,-0.1 4,-1.7 -18,-0.0 3,-0.2 -0.737 66.5-146.6 -93.1 134.4 -8.5 18.9 0.0 93 88 A E H > S+ 0 0 125 -2,-0.4 4,-3.1 1,-0.2 5,-0.2 0.912 100.9 55.3 -57.0 -50.2 -5.7 17.7 -2.3 94 89 A K H > S+ 0 0 126 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.820 108.5 46.5 -49.8 -48.7 -5.5 21.1 -3.9 95 90 A D H > S+ 0 0 42 -3,-0.2 4,-2.3 2,-0.2 5,-0.2 0.821 112.6 51.9 -66.1 -36.1 -4.9 22.9 -0.6 96 91 A R H X S+ 0 0 37 -4,-1.7 4,-2.8 2,-0.2 5,-0.3 0.991 109.8 48.6 -64.5 -54.9 -2.4 20.3 0.4 97 92 A N H X S+ 0 0 12 -4,-3.1 4,-2.2 2,-0.2 -91,-0.5 0.923 111.7 50.1 -47.7 -57.0 -0.5 20.8 -3.0 98 93 A D H X S+ 0 0 22 -4,-2.2 4,-3.1 1,-0.2 3,-0.4 0.970 112.1 44.6 -50.4 -63.9 -0.4 24.5 -2.5 99 94 A L H X S+ 0 0 2 -4,-2.3 4,-4.7 1,-0.3 -1,-0.2 0.916 112.7 50.7 -57.1 -49.5 0.9 24.6 1.0 100 95 A I H X S+ 0 0 2 -4,-2.8 4,-6.2 2,-0.3 -1,-0.3 0.884 110.1 50.5 -52.1 -39.5 3.7 21.9 0.3 101 96 A T H X S+ 0 0 11 -4,-2.2 4,-2.7 -3,-0.4 -1,-0.2 0.957 114.2 46.6 -62.7 -43.9 4.7 23.9 -2.8 102 97 A Y H X S+ 0 0 35 -4,-3.1 4,-2.2 -95,-0.3 -2,-0.3 0.946 116.7 41.2 -58.5 -48.4 4.8 26.7 -0.2 103 98 A L H X S+ 0 0 6 -4,-4.7 4,-2.2 -5,-0.2 5,-0.3 0.954 109.3 61.1 -66.7 -42.9 6.6 24.5 2.2 104 99 A K H < S+ 0 0 108 -4,-6.2 -1,-0.2 -5,-0.2 -2,-0.2 0.876 113.1 38.3 -36.8 -56.0 8.7 23.3 -0.7 105 100 A K H >< S+ 0 0 119 -4,-2.7 3,-1.3 -5,-0.2 -2,-0.2 0.995 118.7 36.9 -66.0 -75.2 9.8 26.8 -1.2 106 101 A A H 3< S+ 0 0 33 -4,-2.2 -2,-0.2 1,-0.2 -3,-0.2 0.824 105.4 61.5 -59.5 -43.6 10.4 28.5 2.2 107 102 A T T 3< 0 0 2 -4,-2.2 -68,-1.8 -5,-0.3 -1,-0.2 0.497 360.0 360.0 -61.6 -1.1 11.8 25.7 4.4 108 103 A E < 0 0 172 -3,-1.3 -1,-0.2 -5,-0.3 -2,-0.2 0.929 360.0 360.0 -76.4 360.0 14.7 25.7 1.9