==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD1 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5731.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 46 0, 0.0 55,-0.2 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.1 38.0 28.1 55.0 2 2 A K >> - 0 0 113 56,-0.4 4,-2.1 53,-0.4 3,-0.8 -0.294 360.0-127.4 -57.7 138.0 35.3 25.5 55.2 3 3 A E H 3> S+ 0 0 138 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.875 108.6 57.6 -58.8 -34.9 36.3 22.6 57.3 4 4 A K H 3> S+ 0 0 128 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.831 106.9 49.2 -65.8 -29.2 35.4 20.1 54.6 5 5 A I H <> S+ 0 0 2 -3,-0.8 4,-2.6 2,-0.2 -1,-0.2 0.919 109.1 50.6 -76.9 -42.7 37.8 21.9 52.2 6 6 A R H X S+ 0 0 88 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.932 111.5 50.2 -56.3 -45.1 40.6 21.8 54.7 7 7 A K H X S+ 0 0 140 -4,-2.6 4,-1.8 1,-0.2 -2,-0.2 0.935 110.0 49.1 -57.8 -47.7 39.9 18.1 55.1 8 8 A K H X S+ 0 0 86 -4,-2.1 4,-0.8 1,-0.2 -1,-0.2 0.876 110.6 51.4 -61.2 -41.1 39.9 17.5 51.4 9 9 A I H >< S+ 0 0 0 -4,-2.6 3,-0.8 1,-0.2 -1,-0.2 0.935 110.0 48.3 -59.1 -46.6 43.2 19.4 51.1 10 10 A L H 3< S+ 0 0 69 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.783 114.2 46.9 -69.6 -25.4 44.8 17.4 53.8 11 11 A L H 3< S+ 0 0 127 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.540 83.8 123.1 -87.3 -8.4 43.6 14.1 52.2 12 12 A A << - 0 0 12 -3,-0.8 29,-0.0 -4,-0.8 -3,-0.0 -0.248 63.5-113.5 -64.2 142.5 44.7 15.0 48.6 13 13 A P - 0 0 51 0, 0.0 24,-2.0 0, 0.0 2,-1.9 -0.281 17.4-112.1 -75.3 159.6 47.1 12.6 47.0 14 14 A E S S+ 0 0 114 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.492 83.5 110.6 -82.9 64.3 50.8 13.1 46.1 15 15 A E S S- 0 0 98 -2,-1.9 21,-2.7 53,-0.0 22,-0.1 -0.966 77.0 -90.5-141.5 154.2 49.7 12.9 42.4 16 16 A P + 0 0 17 0, 0.0 50,-2.0 0, 0.0 2,-0.3 -0.323 63.5 130.8 -64.9 148.3 49.5 15.2 39.4 17 17 A G E -AB 33 65A 0 16,-2.2 16,-2.4 48,-0.3 2,-0.4 -0.991 52.5-102.8-176.0 179.8 46.1 16.8 39.0 18 18 A V E -AB 32 64A 0 46,-2.3 46,-2.9 -2,-0.3 2,-0.4 -0.955 30.6-158.5-121.3 141.2 43.9 19.8 38.4 19 19 A Y E -AB 31 63A 2 12,-2.9 12,-2.4 -2,-0.4 2,-0.4 -0.936 4.7-164.0-125.7 149.3 42.0 21.4 41.2 20 20 A I E -AB 30 62A 6 42,-2.8 42,-2.9 -2,-0.4 2,-0.4 -0.954 5.8-159.1-136.3 110.0 38.8 23.6 41.1 21 21 A F E -AB 29 61A 0 8,-2.8 7,-3.1 -2,-0.4 8,-1.6 -0.773 25.5-173.6 -82.0 137.3 37.6 25.8 43.9 22 22 A K E -AB 27 60A 30 38,-2.8 37,-2.6 -2,-0.4 38,-1.3 -0.892 23.4-158.8-131.6 157.9 33.9 26.6 43.4 23 23 A N E > S-A 26 0A 29 3,-2.3 3,-2.0 -2,-0.3 35,-0.1 -0.972 82.8 -14.7-138.0 124.7 31.2 28.7 45.0 24 24 A K T 3 S- 0 0 167 -2,-0.4 -1,-0.1 1,-0.3 34,-0.0 0.896 131.5 -50.3 50.5 45.2 27.5 27.8 44.5 25 25 A G T 3 S+ 0 0 55 1,-0.2 -1,-0.3 35,-0.0 -3,-0.0 0.384 116.1 112.4 80.6 -4.4 28.5 25.4 41.7 26 26 A V E < S-A 23 0A 87 -3,-2.0 -3,-2.3 2,-0.0 -1,-0.2 -0.875 70.3-120.1-106.7 124.8 30.6 27.9 39.8 27 27 A P E +A 22 0A 14 0, 0.0 59,-0.6 0, 0.0 -5,-0.3 -0.460 30.6 175.1 -58.9 132.8 34.4 27.5 39.5 28 28 A I E S+ 0 0 7 -7,-3.1 59,-2.9 1,-0.4 2,-0.3 0.555 70.0 14.1-113.0 -18.6 36.2 30.5 41.0 29 29 A Y E -A 21 0A 39 -8,-1.6 -8,-2.8 57,-0.2 2,-0.4 -0.905 60.6-171.1-157.6 132.8 39.8 29.3 40.6 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.980 18.6 159.0-121.5 133.4 41.3 26.4 38.6 31 31 A G E -A 19 0A 0 -12,-2.4 -12,-2.9 -2,-0.4 2,-0.3 -0.911 27.8-127.9-143.3 172.6 44.9 25.3 39.0 32 32 A K E -A 18 0A 78 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.834 16.9-163.9-121.1 164.7 47.3 22.4 38.3 33 33 A A E -A 17 0A 9 -16,-2.4 -16,-2.2 -2,-0.3 3,-0.3 -0.996 29.4-151.8-148.2 140.4 49.7 20.5 40.5 34 34 A K S S+ 0 0 131 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.837 110.3 18.0 -71.8 -37.0 52.6 18.1 40.1 35 35 A R S > S- 0 0 118 1,-0.1 4,-2.3 -19,-0.1 -1,-0.3 -0.931 73.6-156.7-133.7 110.5 51.5 16.9 43.5 36 36 A L H > S+ 0 0 0 -21,-2.7 4,-3.0 -2,-0.4 5,-0.3 0.892 94.3 56.4 -52.7 -44.1 48.0 17.8 44.5 37 37 A S H > S+ 0 0 7 -24,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.940 110.3 42.5 -50.8 -53.3 48.9 17.4 48.2 38 38 A N H > S+ 0 0 97 -3,-0.2 4,-0.9 1,-0.2 -2,-0.2 0.926 118.3 43.6 -66.6 -46.2 51.8 19.9 48.0 39 39 A R H >< S+ 0 0 95 -4,-2.3 3,-0.6 1,-0.2 4,-0.5 0.925 115.1 47.6 -68.0 -44.5 50.0 22.5 46.0 40 40 A L H >< S+ 0 0 0 -4,-3.0 3,-1.5 -5,-0.3 4,-0.3 0.868 104.2 60.5 -68.1 -32.2 46.7 22.4 47.9 41 41 A R H >< S+ 0 0 116 -4,-2.1 3,-2.0 -5,-0.3 4,-0.5 0.824 90.9 70.5 -65.7 -25.2 48.4 22.6 51.2 42 42 A S G X< S+ 0 0 41 -4,-0.9 3,-0.9 -3,-0.6 -1,-0.3 0.804 88.2 64.9 -60.1 -27.5 49.8 25.9 50.2 43 43 A Y G < S+ 0 0 7 -3,-1.5 -1,-0.3 -4,-0.5 -2,-0.2 0.674 89.1 66.8 -69.3 -18.6 46.3 27.3 50.5 44 44 A L G < S+ 0 0 29 -3,-2.0 -1,-0.2 -4,-0.3 -2,-0.2 0.785 108.6 36.5 -74.0 -27.0 46.3 26.6 54.2 45 45 A N S < S- 0 0 118 -3,-0.9 -1,-0.3 -4,-0.5 2,-0.2 -0.802 94.3-144.5-124.6 84.2 49.0 29.3 54.8 46 46 A P - 0 0 58 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.338 19.6-173.0 -65.6 121.3 48.1 32.0 52.3 47 47 A Q S S+ 0 0 171 -5,-0.2 2,-0.3 -2,-0.2 -4,-0.1 0.610 73.7 29.2 -83.7 -15.0 51.1 33.7 50.8 48 48 A T S > S- 0 0 75 1,-0.1 4,-2.1 0, 0.0 5,-0.1 -0.939 80.7-114.2-141.4 159.6 48.9 36.3 49.0 49 49 A E H > S+ 0 0 129 -2,-0.3 4,-2.9 2,-0.2 5,-0.2 0.871 116.9 57.1 -60.2 -37.0 45.6 38.0 49.5 50 50 A K H > S+ 0 0 72 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.922 106.5 48.1 -62.8 -44.0 44.3 36.3 46.3 51 51 A V H > S+ 0 0 20 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.913 111.1 51.9 -61.9 -43.5 45.1 32.9 47.9 52 52 A F H X S+ 0 0 96 -4,-2.1 4,-1.5 1,-0.2 -2,-0.2 0.970 111.6 46.8 -53.8 -52.2 43.3 34.0 51.1 53 53 A R H X S+ 0 0 121 -4,-2.9 4,-3.0 1,-0.2 3,-0.4 0.904 108.8 53.5 -58.4 -47.7 40.2 35.0 49.1 54 54 A I H X S+ 0 0 2 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.938 112.5 44.7 -54.4 -48.0 40.1 31.8 47.0 55 55 A G H < S+ 0 0 2 -4,-2.1 -53,-0.4 1,-0.2 -1,-0.2 0.702 117.1 44.7 -70.7 -23.6 40.1 29.7 50.1 56 56 A E H < S+ 0 0 96 -4,-1.5 -2,-0.2 -3,-0.4 -1,-0.2 0.832 114.5 46.2 -86.5 -39.4 37.6 31.8 52.0 57 57 A E H < S+ 0 0 56 -4,-3.0 -2,-0.2 -5,-0.2 -3,-0.2 0.805 91.5 97.0 -74.7 -31.9 35.1 32.2 49.2 58 58 A A < - 0 0 1 -4,-1.7 -56,-0.4 -5,-0.3 -35,-0.3 -0.310 42.6-179.5 -60.6 140.1 35.0 28.6 48.1 59 59 A D S S+ 0 0 39 -37,-2.6 2,-0.3 1,-0.3 -36,-0.2 0.332 75.1 28.5-111.5 2.5 32.2 26.3 49.3 60 60 A E E -B 22 0A 68 -38,-1.3 -38,-2.8 2,-0.0 2,-0.4 -0.974 60.0-157.7-157.6 146.9 33.6 23.3 47.4 61 61 A L E -B 21 0A 9 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.996 12.2-167.4-129.8 121.8 36.9 22.0 46.2 62 62 A E E -B 20 0A 67 -42,-2.9 -42,-2.8 -2,-0.4 2,-0.4 -0.901 3.7-164.1-104.8 137.9 37.0 19.5 43.3 63 63 A T E -B 19 0A 32 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.966 6.2-163.6-120.6 143.7 40.1 17.6 42.5 64 64 A I E -B 18 0A 46 -46,-2.9 -46,-2.3 -2,-0.4 2,-0.4 -0.975 12.1-148.6-124.9 112.9 40.9 15.6 39.3 65 65 A V E -B 17 0A 82 -2,-0.5 -48,-0.3 -48,-0.2 2,-0.2 -0.660 22.4-163.8 -78.4 134.4 43.8 13.2 39.3 66 66 A V - 0 0 9 -50,-2.0 3,-0.1 -2,-0.4 6,-0.0 -0.678 30.6-109.7-120.6 170.9 45.4 12.9 36.0 67 67 A M S S- 0 0 154 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.880 87.6 -29.5 -67.7 -38.0 47.8 10.5 34.2 68 68 A N S > S- 0 0 74 -53,-0.1 4,-2.0 1,-0.0 3,-0.2 -0.946 72.7 -77.3-169.0 177.2 50.8 12.9 34.2 69 69 A E H > S+ 0 0 106 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.776 122.3 59.8 -65.9 -30.4 52.0 16.4 34.1 70 70 A R H > S+ 0 0 206 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.935 107.5 45.5 -63.0 -43.4 51.3 16.7 30.4 71 71 A E H > S+ 0 0 65 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.893 110.2 55.0 -67.3 -39.1 47.7 15.9 30.9 72 72 A A H X S+ 0 0 2 -4,-2.0 4,-2.5 1,-0.2 5,-0.3 0.914 106.5 53.2 -56.0 -43.5 47.6 18.4 33.9 73 73 A F H X S+ 0 0 138 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.947 116.2 35.1 -58.7 -53.3 48.9 21.1 31.6 74 74 A I H X S+ 0 0 94 -4,-1.9 4,-2.6 2,-0.2 5,-0.2 0.879 116.6 53.0 -75.9 -35.7 46.3 20.8 28.9 75 75 A L H X S+ 0 0 37 -4,-2.8 4,-2.6 -5,-0.2 5,-0.2 0.948 111.1 48.0 -64.3 -44.9 43.3 19.9 31.2 76 76 A E H X S+ 0 0 36 -4,-2.5 4,-2.5 -5,-0.3 5,-0.3 0.951 112.5 48.1 -59.8 -48.9 44.0 23.0 33.3 77 77 A A H X S+ 0 0 29 -4,-2.0 4,-2.3 -5,-0.3 -1,-0.2 0.920 113.5 48.2 -56.9 -45.5 44.3 25.2 30.1 78 78 A N H X S+ 0 0 84 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.899 112.1 47.3 -64.1 -42.1 41.1 23.8 28.7 79 79 A L H X S+ 0 0 25 -4,-2.6 4,-2.7 2,-0.2 5,-0.3 0.877 111.1 50.9 -72.0 -34.9 39.1 24.2 31.9 80 80 A I H X S+ 0 0 24 -4,-2.5 4,-2.7 -5,-0.2 -1,-0.2 0.936 112.0 48.5 -65.0 -44.5 40.2 27.8 32.5 81 81 A K H < S+ 0 0 126 -4,-2.3 -2,-0.2 -5,-0.3 -1,-0.2 0.921 115.0 45.7 -60.7 -41.6 39.2 28.6 28.9 82 82 A K H < S+ 0 0 143 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.923 127.5 23.9 -67.0 -45.2 35.8 26.9 29.4 83 83 A Y H < S- 0 0 105 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.626 78.8-153.9-101.7 -19.4 34.9 28.4 32.8 84 84 A R < - 0 0 165 -4,-2.7 -4,-0.1 -5,-0.3 -3,-0.1 0.906 28.3-145.3 39.5 63.3 37.0 31.7 33.0 85 85 A P > - 0 0 4 0, 0.0 3,-1.9 0, 0.0 -57,-0.2 -0.225 14.4-112.5 -67.2 149.8 37.0 31.6 36.7 86 86 A K T 3 S+ 0 0 128 -59,-0.6 -57,-0.2 1,-0.3 -58,-0.1 0.769 113.7 39.9 -40.7 -50.2 36.9 34.8 38.8 87 87 A Y T 3 S+ 0 0 36 -59,-2.9 2,-0.5 2,-0.1 -1,-0.3 0.387 92.2 96.2 -94.3 1.2 40.4 34.5 40.2 88 88 A N < 0 0 26 -3,-1.9 -57,-0.0 -60,-0.2 -59,-0.0 -0.789 360.0 360.0 -88.3 136.1 42.2 33.2 37.1 89 89 A V 0 0 162 -2,-0.5 -2,-0.1 0, 0.0 -1,-0.0 -0.253 360.0 360.0 -76.2 360.0 43.9 36.0 35.2