==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 28-SEP-96 1YGW . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR S.PFEIFFER,Y.KARIMI-NEJAD,H.RUTERJANS . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5379.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 17.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 116 0, 0.0 12,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 64.1 -8.5 -14.9 -6.7 2 2 A a + 0 0 66 8,-0.2 3,-0.1 1,-0.2 9,-0.1 -0.048 360.0 164.4 -36.7 125.5 -5.1 -13.7 -5.5 3 3 A D + 0 0 99 1,-0.2 2,-0.4 0, 0.0 -1,-0.2 0.410 64.6 55.1-125.6 -10.4 -3.9 -11.3 -8.1 4 4 A Y + 0 0 59 84,-0.1 7,-1.4 100,-0.1 2,-0.8 -0.780 62.4 174.3-131.2 88.1 -1.2 -9.6 -6.0 5 5 A T - 0 0 37 -2,-0.4 99,-3.3 5,-0.2 2,-2.1 -0.848 18.1-160.1 -99.2 107.9 1.3 -12.1 -4.7 6 6 A b - 0 0 3 -2,-0.8 2,-3.7 97,-0.3 70,-0.1 -0.458 63.6 -81.8 -84.1 64.6 4.2 -10.4 -2.9 7 7 A G S S+ 0 0 62 -2,-2.1 -1,-0.1 1,-0.2 -2,-0.1 -0.227 134.0 31.1 69.4 -54.1 6.4 -13.4 -3.2 8 8 A S S S+ 0 0 94 -2,-3.7 2,-0.2 0, 0.0 -1,-0.2 -0.403 110.2 79.7-130.6 54.7 4.8 -14.9 -0.2 9 9 A N - 0 0 14 -7,-0.0 -4,-0.1 2,-0.0 -2,-0.1 -0.792 47.8-164.9-144.3-175.1 1.2 -13.4 -0.4 10 10 A a + 0 0 66 -2,-0.2 2,-0.5 -6,-0.2 -8,-0.2 -0.126 38.6 132.1-177.6 61.9 -2.1 -14.0 -2.1 11 11 A Y - 0 0 5 -7,-1.4 5,-0.2 -10,-0.1 -9,-0.1 -0.865 36.2-160.1-128.8 97.2 -4.3 -10.9 -1.8 12 12 A S >> - 0 0 11 -2,-0.5 3,-2.7 -9,-0.1 4,-2.6 0.042 51.4 -75.1 -63.1 179.0 -5.9 -9.7 -5.0 13 13 A S H 3> S+ 0 0 52 1,-0.3 4,-1.4 2,-0.2 -1,-0.1 0.689 138.5 60.3 -50.8 -17.7 -7.3 -6.2 -5.4 14 14 A S H 3> S+ 0 0 91 2,-0.2 4,-0.6 1,-0.1 -1,-0.3 0.786 108.5 40.3 -80.6 -30.3 -10.1 -7.7 -3.2 15 15 A D H <> S+ 0 0 81 -3,-2.7 4,-1.2 2,-0.2 3,-0.4 0.869 110.8 57.0 -83.7 -41.9 -7.7 -8.4 -0.4 16 16 A V H >X S+ 0 0 0 -4,-2.6 4,-2.9 1,-0.2 3,-0.8 0.934 95.7 66.0 -53.4 -51.1 -5.7 -5.2 -0.8 17 17 A S H 3X S+ 0 0 57 -4,-1.4 4,-3.7 1,-0.3 5,-0.3 0.869 98.4 53.3 -35.7 -55.8 -8.9 -3.2 -0.3 18 18 A T H 3X S+ 0 0 78 -4,-0.6 4,-0.9 -3,-0.4 -1,-0.3 0.909 111.0 45.4 -47.8 -50.5 -9.0 -4.5 3.3 19 19 A A H XX S+ 0 0 4 -4,-1.2 4,-1.6 -3,-0.8 3,-0.6 0.895 114.1 50.6 -61.0 -41.7 -5.5 -3.3 3.8 20 20 A Q H 3X S+ 0 0 4 -4,-2.9 4,-3.4 1,-0.2 5,-0.3 0.970 97.0 64.3 -59.9 -57.6 -6.4 0.0 2.2 21 21 A A H 3X S+ 0 0 56 -4,-3.7 4,-2.3 1,-0.3 -1,-0.2 0.785 106.4 49.8 -35.7 -34.1 -9.5 0.6 4.3 22 22 A A H S+ 0 0 31 -4,-2.4 5,-3.1 1,-0.2 4,-0.7 0.848 117.4 51.6 -57.8 -35.2 -6.3 6.4 9.3 27 27 A H H ><5S+ 0 0 38 -4,-1.7 3,-1.1 -5,-0.3 -2,-0.3 0.949 106.7 50.5 -66.3 -51.0 -5.7 8.7 6.3 28 28 A E H 3<5S+ 0 0 111 -4,-4.6 -1,-0.2 1,-0.3 -2,-0.2 0.767 114.6 46.4 -57.7 -26.2 -9.1 10.2 6.4 29 29 A D H 3<5S- 0 0 109 -4,-1.7 -1,-0.3 -5,-0.4 -2,-0.2 0.618 111.2-127.0 -89.5 -16.7 -8.4 10.8 10.1 30 30 A G T <<5 + 0 0 60 -3,-1.1 -3,-0.2 -4,-0.7 2,-0.1 0.719 66.1 131.5 75.8 22.8 -5.0 12.2 9.3 31 31 A E < - 0 0 118 -5,-3.1 -1,-0.2 -6,-0.2 2,-0.2 -0.416 45.1-139.3 -99.3 176.9 -3.4 9.7 11.7 32 32 A T - 0 0 68 -2,-0.1 2,-0.4 2,-0.1 5,-0.1 -0.721 7.8-126.1-129.0 178.6 -0.5 7.3 11.4 33 33 A V B > > -A 38 0A 12 5,-1.0 5,-0.6 -2,-0.2 3,-0.6 -0.990 68.2 -18.5-135.1 124.6 0.4 3.8 12.4 34 34 A G T 3 5S- 0 0 41 -2,-0.4 36,-0.2 35,-0.4 37,-0.1 -0.550 109.0 -45.6 85.1-149.8 3.5 2.8 14.3 35 35 A S T 3 5S+ 0 0 113 -2,-0.2 -1,-0.2 2,-0.0 36,-0.1 0.529 121.1 76.0 -95.8 -10.7 6.5 5.1 14.6 36 36 A N T < 5S- 0 0 60 -3,-0.6 35,-0.1 34,-0.2 36,-0.1 0.053 92.5-107.8 -83.5-163.1 6.4 5.9 10.9 37 37 A S T 5 - 0 0 68 -5,-0.1 -3,-0.1 34,-0.1 34,-0.1 -0.298 54.7-170.0-126.4 46.2 4.1 8.2 9.1 38 38 A Y B < +A 33 0A 23 -5,-0.6 -5,-1.0 32,-0.2 2,-0.2 -0.715 56.1 37.5 -96.5 145.4 1.9 5.7 7.2 39 39 A P S S+ 0 0 10 0, 0.0 2,-0.3 0, 0.0 20,-0.2 0.633 84.1 141.1 -75.0-171.9 0.0 5.9 5.2 40 40 A H E -B 58 0B 54 18,-0.9 18,-3.3 -2,-0.2 -2,-0.1 -0.942 54.0 -54.5-178.5 162.4 1.5 8.6 3.1 41 41 A K E -B 57 0B 119 -2,-0.3 16,-0.2 16,-0.2 17,-0.1 0.020 38.4-178.2 -44.1 155.6 2.0 9.8 -0.4 42 42 A Y - 0 0 18 14,-1.8 15,-0.2 38,-0.1 -1,-0.1 0.192 9.0-166.2-144.4 10.8 3.7 7.3 -2.7 43 43 A N - 0 0 72 13,-0.5 14,-0.0 2,-0.1 -2,-0.0 0.394 27.8-135.9 -7.9 88.8 4.0 9.3 -6.0 44 44 A N + 0 0 39 1,-0.1 12,-0.0 2,-0.1 -2,-0.0 0.111 49.3 142.3 -51.1 174.4 4.8 6.2 -8.0 45 45 A Y + 0 0 181 -3,-0.0 -1,-0.1 0, 0.0 -2,-0.1 0.061 47.0 91.6 177.5 -44.0 7.6 6.4 -10.5 46 46 A E S S- 0 0 133 1,-0.2 -2,-0.1 54,-0.0 53,-0.0 0.710 121.0 -77.6 -44.2 -20.9 9.6 3.2 -10.5 47 47 A G S S+ 0 0 45 1,-0.1 2,-0.4 54,-0.0 -1,-0.2 0.695 72.1 169.4 119.1 54.9 7.1 2.3 -13.2 48 48 A F - 0 0 17 53,-0.1 2,-1.3 2,-0.0 -1,-0.1 -0.821 30.7-145.4 -99.7 133.3 3.8 1.4 -11.5 49 49 A D - 0 0 132 -2,-0.4 2,-1.0 2,-0.1 -1,-0.0 -0.570 26.0-179.8 -94.9 69.0 0.6 1.0 -13.6 50 50 A F - 0 0 18 -2,-1.3 2,-0.7 1,-0.2 38,-0.1 -0.620 19.0-160.0 -75.7 102.7 -1.8 2.4 -11.0 51 51 A S + 0 0 113 -2,-1.0 2,-0.3 36,-0.4 -1,-0.2 0.060 69.2 86.0 -71.4 29.7 -5.2 2.1 -12.6 52 52 A V S S- 0 0 15 -2,-0.7 2,-0.3 35,-0.1 -2,-0.1 -0.888 82.7-109.0-129.9 160.1 -6.2 4.7 -10.0 53 53 A S - 0 0 86 -2,-0.3 30,-0.2 1,-0.1 29,-0.2 -0.633 52.7 -70.3 -90.2 147.5 -6.0 8.5 -9.8 54 54 A S S S+ 0 0 70 -2,-0.3 2,-0.2 27,-0.1 27,-0.1 -0.159 91.9 73.2 -73.0 172.3 -3.6 10.3 -7.5 55 55 A P S S- 0 0 51 0, 0.0 2,-0.5 0, 0.0 27,-0.5 0.551 71.1-150.9 -75.0 157.3 -2.6 11.2 -5.1 56 56 A Y - 0 0 33 25,-0.2 -14,-1.8 -2,-0.2 2,-0.5 -0.827 5.2-156.2 -98.2 128.2 -1.3 7.7 -4.4 57 57 A Y E -BC 41 80B 13 23,-7.5 23,-4.2 -2,-0.5 2,-0.4 -0.904 6.8-145.8-107.6 126.5 -1.1 6.6 -0.7 58 58 A E E +BC 40 79B 19 -18,-3.3 -18,-0.9 -2,-0.5 21,-0.3 -0.743 25.2 166.7 -92.4 135.1 1.3 3.8 0.3 59 59 A W E - C 0 78B 0 19,-4.6 19,-4.4 -2,-0.4 2,-0.1 -0.987 35.7-104.9-146.7 149.9 0.3 1.5 3.1 60 60 A P E - C 0 77B 0 0, 0.0 2,-0.5 0, 0.0 8,-0.3 -0.400 27.0-141.7 -75.0 151.9 1.6 -1.9 4.4 61 61 A I - 0 0 8 15,-1.3 2,-0.6 13,-0.1 15,-0.1 -0.968 6.6-147.9-120.6 118.0 -0.3 -5.1 3.7 62 62 A L > - 0 0 45 4,-0.6 3,-3.3 -2,-0.5 4,-0.2 -0.751 10.1-145.0 -87.4 120.7 -0.6 -7.7 6.4 63 63 A S T 3 S+ 0 0 83 -2,-0.6 -1,-0.1 1,-0.3 -53,-0.0 0.613 104.3 61.5 -57.7 -10.5 -0.7 -11.2 5.0 64 64 A S T 3 S- 0 0 106 2,-0.0 -1,-0.3 0, 0.0 3,-0.1 0.607 116.9-116.6 -90.0 -15.6 -3.0 -11.8 7.9 65 65 A G S < S+ 0 0 38 -3,-3.3 2,-0.2 1,-0.2 -2,-0.1 0.850 71.9 126.4 81.3 38.4 -5.4 -9.2 6.6 66 66 A D - 0 0 97 -4,-0.2 2,-0.7 -44,-0.0 -4,-0.6 -0.453 67.9 -91.1-113.7-172.7 -5.1 -6.8 9.6 67 67 A V - 0 0 82 -2,-0.2 -6,-0.1 -6,-0.1 -48,-0.1 -0.912 43.1-125.4-109.5 108.7 -4.2 -3.2 10.0 68 68 A Y - 0 0 16 -2,-0.7 -34,-0.1 -8,-0.3 -1,-0.0 0.089 25.4-176.8 -43.7 161.3 -0.5 -2.5 10.4 69 69 A S + 0 0 98 -36,-0.2 -35,-0.4 3,-0.0 2,-0.3 -0.170 51.8 56.5-162.4 52.5 0.6 -0.6 13.4 70 70 A G S S- 0 0 17 -37,-0.4 -32,-0.2 -36,-0.2 -34,-0.2 -0.870 81.2-101.1-161.8-167.8 4.3 -0.0 13.2 71 71 A G S S+ 0 0 14 -2,-0.3 3,-0.2 1,-0.2 -34,-0.1 0.728 109.9 50.2-101.2 -31.8 7.2 1.3 11.1 72 72 A S + 0 0 117 1,-0.2 -1,-0.2 -36,-0.1 3,-0.1 -0.767 60.1 151.9-112.8 83.9 8.4 -1.9 9.7 73 73 A P - 0 0 28 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.942 57.0 -98.2 -75.0 -51.4 5.4 -3.7 8.3 74 74 A G - 0 0 32 -3,-0.2 -13,-0.1 1,-0.1 -12,-0.0 -0.809 36.9 -67.5 149.4 171.9 7.2 -5.7 5.6 75 75 A A S S+ 0 0 34 -2,-0.2 -1,-0.1 16,-0.1 2,-0.1 0.908 107.2 87.9 -54.5 -45.2 8.1 -5.8 1.9 76 76 A D + 0 0 24 15,-0.2 -15,-1.3 -70,-0.1 2,-0.3 -0.377 59.3 162.5 -59.6 126.3 4.4 -6.3 1.1 77 77 A R E -CD 60 90B 13 13,-2.6 13,-2.0 -17,-0.3 2,-0.4 -0.988 28.9-143.4-151.6 139.8 2.7 -2.9 0.8 78 78 A V E -CD 59 89B 0 -19,-4.4 -19,-4.6 -2,-0.3 2,-0.4 -0.818 12.6-155.0-105.7 144.6 -0.5 -1.6 -0.7 79 79 A V E +CD 58 88B 0 9,-0.7 8,-7.6 -2,-0.4 9,-1.0 -0.954 25.1 144.8-121.6 138.8 -0.9 1.7 -2.5 80 80 A F E -CD 57 86B 0 -23,-4.2 -23,-7.5 -2,-0.4 6,-0.2 -0.696 33.0-117.2-147.4-161.6 -4.0 3.7 -2.9 81 81 A N - 0 0 0 4,-0.5 3,-0.3 -25,-0.3 -25,-0.2 -0.578 43.8 -82.1-133.3-164.8 -5.4 7.3 -3.0 82 82 A E S S+ 0 0 110 -27,-0.5 -26,-0.1 -2,-0.2 -28,-0.1 0.116 119.0 67.5 -92.8 19.8 -7.8 9.5 -1.1 83 83 A N S S- 0 0 49 -30,-0.2 -1,-0.2 2,-0.1 3,-0.1 0.678 115.9-104.1-106.7 -30.2 -10.7 7.9 -2.9 84 84 A N S S+ 0 0 97 -3,-0.3 -63,-0.1 1,-0.2 -2,-0.1 0.579 78.3 128.0 111.0 21.2 -10.4 4.5 -1.3 85 85 A Q - 0 0 79 -32,-0.1 -4,-0.5 -65,-0.1 2,-0.4 -0.268 57.1-114.1 -96.0-175.1 -8.9 2.7 -4.3 86 86 A L E -D 80 0B 23 -6,-0.2 -6,-0.4 1,-0.1 -35,-0.2 -0.992 10.2-162.7-129.0 127.2 -5.8 0.6 -4.7 87 87 A A E - 0 0 6 -8,-7.6 -36,-0.4 -2,-0.4 2,-0.3 0.881 60.3 -92.1 -71.7 -39.9 -2.7 1.6 -6.7 88 88 A G E -D 79 0B 6 -9,-1.0 -9,-0.7 -38,-0.1 2,-0.3 -0.924 49.8 -57.8 165.1-137.8 -1.5 -2.0 -6.7 89 89 A V E -D 78 0B 0 -2,-0.3 14,-7.4 -11,-0.2 -11,-0.2 -0.780 48.4-177.3-148.0 96.9 0.7 -4.2 -4.6 90 90 A I E -DE 77 102B 0 -13,-2.0 -13,-2.6 12,-0.3 2,-0.3 -0.456 3.0-175.3 -90.6 166.0 4.3 -3.2 -4.1 91 91 A T - 0 0 2 10,-1.0 10,-0.4 -15,-0.2 -15,-0.2 -0.977 40.3-120.2-161.1 150.2 7.0 -5.1 -2.2 92 92 A H > + 0 0 54 -2,-0.3 2,-1.3 8,-0.2 3,-0.7 0.229 56.8 153.5 -76.4 15.8 10.6 -4.7 -1.1 93 93 A T T 3 S- 0 0 82 1,-0.3 -2,-0.1 8,-0.3 -86,-0.1 -0.250 87.9 -58.5 -50.7 87.3 11.2 -7.8 -3.2 94 94 A G T 3 S+ 0 0 77 -2,-1.3 -1,-0.3 1,-0.2 -2,-0.1 0.800 83.3 164.5 35.2 40.3 14.8 -7.0 -3.9 95 95 A A < - 0 0 14 -3,-0.7 -1,-0.2 4,-0.4 5,-0.1 0.646 68.0 -93.0 -58.3 -13.1 13.5 -3.8 -5.3 96 96 A S S S- 0 0 102 1,-0.3 2,-0.4 -4,-0.3 -1,-0.1 0.822 86.1 -30.1 99.6 46.4 17.1 -2.8 -5.0 97 97 A G S S- 0 0 58 -5,-0.2 -1,-0.3 2,-0.2 -2,-0.3 -0.970 125.2 -16.6 122.0-131.9 17.1 -1.1 -1.6 98 98 A N S S+ 0 0 117 -2,-0.4 -1,-0.1 -3,-0.1 2,-0.0 0.257 103.6 119.3 -94.6 9.6 14.2 0.7 -0.1 99 99 A N - 0 0 45 -7,-0.1 -4,-0.4 1,-0.1 2,-0.2 -0.321 57.0-133.9 -73.3 158.9 12.6 0.9 -3.5 100 100 A F - 0 0 18 -5,-0.1 2,-0.3 -4,-0.1 -8,-0.2 -0.670 18.2-172.8-112.0 167.6 9.2 -0.7 -4.1 101 101 A V - 0 0 48 -10,-0.4 -10,-1.0 -2,-0.2 -8,-0.3 -0.919 36.7 -96.2-162.7 133.9 7.8 -2.9 -6.9 102 102 A E B -E 90 0B 92 -2,-0.3 -12,-0.3 -12,-0.3 -97,-0.1 -0.285 46.5-124.6 -53.7 125.7 4.4 -4.3 -7.7 103 103 A b 0 0 10 -14,-7.4 -97,-0.3 -26,-0.2 -14,-0.1 0.236 360.0 360.0 -56.5-168.8 4.1 -7.8 -6.3 104 104 A T 0 0 122 -99,-3.3 -98,-0.2 -14,-0.1 -1,-0.1 0.424 360.0 360.0-110.7 360.0 3.2 -10.7 -8.6