==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 08-MAY-99 2YGS . COMPND 2 MOLECULE: APOPTOTIC PROTEASE ACTIVATING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.SHI . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5306.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 73.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 50 0, 0.0 63,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 169.1 3.7 -1.6 20.2 2 2 A D >> - 0 0 81 1,-0.1 4,-2.5 88,-0.1 3,-0.6 -0.327 360.0-119.9 -59.8 142.3 0.2 -2.9 20.3 3 3 A A H 3> S+ 0 0 49 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.819 113.2 59.5 -54.4 -34.9 -0.4 -5.7 17.7 4 4 A K H 3> S+ 0 0 176 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.930 109.7 42.0 -60.2 -45.4 -3.1 -3.5 16.0 5 5 A A H <> S+ 0 0 0 -3,-0.6 4,-2.3 2,-0.2 -2,-0.2 0.935 115.0 50.3 -66.9 -46.6 -0.5 -0.8 15.4 6 6 A R H X S+ 0 0 107 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.922 111.3 48.7 -57.2 -47.2 2.1 -3.3 14.3 7 7 A N H X S+ 0 0 81 -4,-3.1 4,-2.2 2,-0.2 -1,-0.2 0.828 108.2 54.4 -63.6 -34.4 -0.3 -5.0 11.9 8 8 A C H X S+ 0 0 9 -4,-1.7 4,-1.8 -5,-0.2 -1,-0.2 0.938 110.8 45.9 -65.8 -44.0 -1.3 -1.6 10.4 9 9 A L H X S+ 0 0 0 -4,-2.3 4,-0.6 1,-0.2 -2,-0.2 0.914 111.8 51.2 -64.8 -42.0 2.4 -0.9 9.7 10 10 A L H >< S+ 0 0 83 -4,-2.6 3,-0.6 1,-0.2 4,-0.4 0.887 108.4 53.9 -62.4 -37.2 3.0 -4.4 8.3 11 11 A Q H 3< S+ 0 0 138 -4,-2.2 3,-0.3 1,-0.2 -1,-0.2 0.891 118.0 32.8 -65.6 -39.4 -0.0 -3.9 6.0 12 12 A H H 3X S+ 0 0 33 -4,-1.8 4,-2.1 1,-0.2 -1,-0.2 0.259 86.6 108.1-104.6 14.9 1.2 -0.6 4.5 13 13 A R H S+ 0 0 121 -4,-0.4 4,-1.6 -3,-0.3 -1,-0.2 0.919 110.1 49.3 -58.2 -45.8 5.3 -1.8 0.9 15 15 A A H > S+ 0 0 32 -4,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.890 113.3 47.2 -61.3 -41.9 3.6 1.6 0.2 16 16 A L H X S+ 0 0 0 -4,-2.1 4,-2.4 1,-0.2 3,-0.5 0.943 110.5 50.0 -66.7 -48.7 5.8 3.3 2.7 17 17 A E H < S+ 0 0 43 -4,-2.9 36,-0.2 1,-0.2 -1,-0.2 0.789 108.9 54.1 -61.2 -30.3 9.1 1.8 1.5 18 18 A K H < S+ 0 0 115 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.832 121.5 25.4 -74.4 -31.6 8.3 2.7 -2.1 19 19 A D H < S+ 0 0 94 -4,-1.2 -2,-0.2 -3,-0.5 -3,-0.1 0.846 94.7 92.1-103.8 -42.0 7.7 6.4 -1.4 20 20 A I < - 0 0 0 -4,-2.4 2,-0.4 -5,-0.2 33,-0.2 -0.281 53.2-147.4 -73.7 145.3 9.5 7.8 1.7 21 21 A K - 0 0 120 1,-0.1 4,-0.5 -2,-0.1 29,-0.0 -0.862 14.7-155.0 -96.7 136.2 12.9 9.4 2.1 22 22 A T S > S+ 0 0 6 -2,-0.4 4,-3.1 2,-0.1 5,-0.3 0.818 71.2 81.4 -87.4 -30.0 14.3 8.5 5.5 23 23 A S H > S+ 0 0 56 1,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.874 102.1 29.8 -42.7 -63.7 16.7 11.4 6.3 24 24 A Y H > S+ 0 0 135 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.880 117.1 58.2 -69.9 -36.4 14.3 14.0 7.6 25 25 A I H > S+ 0 0 1 -4,-0.5 4,-2.0 1,-0.2 3,-0.3 0.962 108.5 47.3 -57.4 -47.0 11.8 11.5 9.0 26 26 A M H X S+ 0 0 1 -4,-3.1 4,-2.8 1,-0.2 5,-0.3 0.872 105.2 59.0 -63.2 -36.4 14.7 10.1 11.2 27 27 A D H X S+ 0 0 70 -4,-1.6 4,-2.4 -5,-0.3 -1,-0.2 0.919 107.9 47.6 -57.8 -41.7 15.7 13.6 12.3 28 28 A H H X S+ 0 0 52 -4,-2.0 4,-2.5 -3,-0.3 -2,-0.2 0.932 112.1 47.8 -64.5 -47.0 12.2 14.0 13.7 29 29 A M H X>S+ 0 0 0 -4,-2.0 5,-2.7 2,-0.2 4,-1.2 0.861 111.8 49.8 -65.0 -35.1 12.2 10.6 15.4 30 30 A I H ><5S+ 0 0 45 -4,-2.8 3,-0.6 4,-0.2 -1,-0.2 0.946 110.8 50.5 -67.0 -45.8 15.6 11.3 17.0 31 31 A S H 3<5S+ 0 0 103 -4,-2.4 -2,-0.2 -5,-0.3 -1,-0.2 0.904 110.6 49.7 -57.2 -42.6 14.3 14.7 18.1 32 32 A D H 3<5S- 0 0 80 -4,-2.5 -1,-0.3 -5,-0.1 -2,-0.2 0.724 117.2-114.6 -69.2 -24.2 11.3 13.0 19.7 33 33 A G T <<5S+ 0 0 57 -4,-1.2 -3,-0.2 -3,-0.6 -2,-0.1 0.665 88.2 105.2 97.0 21.9 13.4 10.4 21.5 34 34 A F S - 0 0 68 -2,-0.3 4,-2.4 1,-0.1 5,-0.1 -0.620 25.1-117.0 -97.3 163.3 18.8 6.6 18.3 37 37 A I H > S+ 0 0 83 1,-0.2 4,-2.9 -2,-0.2 5,-0.2 0.873 117.9 60.3 -63.4 -34.7 21.8 7.9 16.3 38 38 A S H > S+ 0 0 84 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.933 108.1 42.9 -58.0 -45.7 23.0 4.3 16.4 39 39 A E H > S+ 0 0 45 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.908 112.0 53.8 -67.2 -41.8 19.8 3.2 14.6 40 40 A E H X S+ 0 0 10 -4,-2.4 4,-2.9 1,-0.2 -2,-0.2 0.921 108.0 50.6 -58.1 -46.6 20.0 6.2 12.2 41 41 A E H X S+ 0 0 110 -4,-2.9 4,-1.4 1,-0.2 -1,-0.2 0.885 109.3 50.5 -60.8 -39.8 23.6 5.2 11.2 42 42 A K H < S+ 0 0 124 -4,-1.7 4,-0.3 -5,-0.2 -1,-0.2 0.907 111.7 48.0 -65.6 -41.8 22.5 1.6 10.5 43 43 A V H >< S+ 0 0 0 -4,-2.4 3,-2.1 1,-0.2 -2,-0.2 0.959 109.7 53.0 -61.3 -49.5 19.7 2.8 8.3 44 44 A R H 3< S+ 0 0 147 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.766 97.0 67.5 -56.1 -31.0 22.0 5.2 6.5 45 45 A N T 3< S+ 0 0 138 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.592 77.2 101.9 -68.8 -11.6 24.4 2.3 5.8 46 46 A E S < S- 0 0 57 -3,-2.1 6,-0.2 -4,-0.3 7,-0.0 -0.649 75.3-133.9 -76.4 131.7 21.8 0.8 3.5 47 47 A P S S+ 0 0 97 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.824 76.9 40.0 -51.1 -50.2 22.6 1.4 -0.2 48 48 A T S > S- 0 0 53 1,-0.1 4,-2.4 0, 0.0 5,-0.2 -0.683 80.6-113.3-109.8 165.6 19.3 2.6 -1.7 49 49 A Q H > S+ 0 0 49 -2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.921 118.3 46.8 -57.1 -47.6 16.4 4.8 -0.6 50 50 A Q H > S+ 0 0 84 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.856 111.1 50.8 -65.2 -37.6 14.0 1.8 -0.4 51 51 A Q H > S+ 0 0 81 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.872 110.8 49.7 -68.9 -34.7 16.5 -0.4 1.5 52 52 A R H X S+ 0 0 74 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.939 112.3 47.5 -67.1 -45.1 17.0 2.5 4.0 53 53 A A H X S+ 0 0 0 -4,-2.5 4,-2.6 -36,-0.2 5,-0.2 0.903 110.9 52.3 -61.2 -41.0 13.2 2.8 4.3 54 54 A A H X S+ 0 0 26 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.933 111.2 46.4 -61.1 -46.1 12.9 -1.0 4.7 55 55 A M H X S+ 0 0 25 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.916 112.0 50.9 -63.4 -44.8 15.5 -1.0 7.5 56 56 A L H X S+ 0 0 0 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.942 112.7 45.3 -59.0 -49.7 13.9 1.9 9.3 57 57 A I H X S+ 0 0 0 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.889 108.1 58.2 -62.7 -37.5 10.4 0.3 9.2 58 58 A K H < S+ 0 0 105 -4,-2.4 4,-0.4 -5,-0.2 -1,-0.2 0.889 110.6 43.4 -58.8 -40.0 12.0 -3.0 10.4 59 59 A M H >< S+ 0 0 15 -4,-2.0 3,-1.3 -3,-0.2 4,-0.3 0.919 111.5 53.2 -71.3 -43.7 13.3 -1.2 13.5 60 60 A I H >< S+ 0 0 0 -4,-2.5 3,-2.2 1,-0.3 -2,-0.2 0.870 96.5 66.6 -61.4 -37.7 10.0 0.7 14.1 61 61 A L T 3< S+ 0 0 26 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.741 103.7 47.2 -56.5 -24.4 8.0 -2.6 14.1 62 62 A K T < S+ 0 0 174 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.447 98.8 89.9 -97.9 -1.3 9.8 -3.6 17.3 63 63 A K S < S- 0 0 37 -3,-2.2 -29,-0.0 -4,-0.3 -3,-0.0 -0.278 79.6 -91.6 -88.8 176.4 9.3 -0.2 19.0 64 64 A D > - 0 0 80 -63,-0.1 4,-1.7 -2,-0.1 3,-0.4 -0.103 41.1 -89.7 -82.4-178.6 6.5 0.9 21.3 65 65 A N H > S+ 0 0 46 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.892 124.9 54.6 -57.2 -46.3 3.2 2.8 20.7 66 66 A D H > S+ 0 0 98 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.838 106.1 52.9 -58.1 -35.1 4.8 6.2 21.2 67 67 A S H > S+ 0 0 5 -3,-0.4 4,-2.4 2,-0.2 -1,-0.2 0.883 107.5 51.3 -68.6 -38.2 7.4 5.3 18.5 68 68 A Y H X S+ 0 0 0 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.939 112.2 46.3 -63.0 -46.8 4.6 4.4 16.1 69 69 A V H X S+ 0 0 40 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.873 110.7 53.0 -64.4 -36.1 2.9 7.8 16.8 70 70 A S H X S+ 0 0 4 -4,-2.2 4,-2.1 2,-0.2 -1,-0.2 0.911 109.7 48.6 -64.0 -43.4 6.3 9.6 16.4 71 71 A F H X S+ 0 0 0 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.939 110.7 51.4 -60.6 -48.2 6.7 7.9 13.0 72 72 A Y H X S+ 0 0 32 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.917 111.6 46.6 -54.7 -48.7 3.2 8.9 12.0 73 73 A N H X S+ 0 0 58 -4,-2.6 4,-2.8 2,-0.2 -1,-0.2 0.847 109.2 54.7 -63.7 -36.8 3.9 12.6 13.0 74 74 A A H X S+ 0 0 1 -4,-2.1 4,-1.7 2,-0.2 -2,-0.2 0.929 107.8 50.1 -62.5 -45.1 7.2 12.5 11.1 75 75 A L H <>S+ 0 0 0 -4,-2.4 5,-2.3 2,-0.2 -2,-0.2 0.930 112.7 46.6 -58.7 -47.8 5.4 11.4 7.9 76 76 A L H ><5S+ 0 0 59 -4,-2.2 3,-1.9 1,-0.2 -2,-0.2 0.936 111.1 50.8 -61.0 -48.2 2.8 14.2 8.3 77 77 A H H 3<5S+ 0 0 128 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.783 109.8 51.6 -63.5 -25.1 5.4 16.8 9.0 78 78 A E T 3<5S- 0 0 66 -4,-1.7 -1,-0.3 -3,-0.2 -2,-0.2 0.324 121.4-107.4 -93.4 7.8 7.3 15.7 5.9 79 79 A G T < 5S+ 0 0 53 -3,-1.9 2,-2.2 1,-0.1 3,-0.3 0.471 75.8 135.9 84.0 3.1 4.2 16.0 3.7 80 80 A Y >< + 0 0 45 -5,-2.3 4,-2.5 1,-0.2 5,-0.2 -0.383 23.2 160.3 -82.1 63.4 3.5 12.3 3.2 81 81 A K H > + 0 0 140 -2,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.838 67.4 45.4 -52.2 -49.7 -0.2 12.9 3.9 82 82 A D H > S+ 0 0 129 -3,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.898 112.9 50.6 -65.4 -42.0 -1.7 9.8 2.3 83 83 A L H > S+ 0 0 10 2,-0.2 4,-1.1 1,-0.2 -2,-0.2 0.910 111.2 47.9 -64.5 -41.6 0.9 7.5 3.9 84 84 A A H >X S+ 0 0 0 -4,-2.5 4,-1.5 1,-0.2 3,-0.9 0.931 108.4 56.5 -63.6 -42.1 0.2 9.0 7.3 85 85 A A H 3X S+ 0 0 62 -4,-2.2 4,-0.6 1,-0.3 3,-0.3 0.872 101.5 57.0 -57.1 -36.7 -3.5 8.5 6.6 86 86 A L H 3< S+ 0 0 64 -4,-1.8 3,-0.3 1,-0.2 -1,-0.3 0.835 111.8 41.6 -63.8 -33.1 -2.9 4.8 6.0 87 87 A L H XX S+ 0 0 0 -4,-1.1 3,-1.6 -3,-0.9 4,-0.5 0.624 89.4 87.9 -89.0 -16.0 -1.4 4.5 9.5 88 88 A H H >< S+ 0 0 111 -4,-1.5 3,-1.5 1,-0.3 -1,-0.2 0.868 82.2 63.4 -50.7 -36.8 -4.0 6.7 11.3 89 89 A D T 3< S+ 0 0 141 -4,-0.6 -1,-0.3 -3,-0.3 -2,-0.1 0.812 102.0 48.6 -56.9 -37.6 -6.1 3.5 11.7 90 90 A G T <4 S+ 0 0 8 -3,-1.6 -1,-0.3 -4,-0.2 -2,-0.2 0.452 77.4 120.2 -87.5 -1.5 -3.4 1.9 13.9 91 91 A I << 0 0 47 -3,-1.5 -26,-0.0 -4,-0.5 -3,-0.0 -0.497 360.0 360.0 -66.2 121.9 -2.9 4.8 16.2 92 92 A P 0 0 109 0, 0.0 -1,-0.2 0, 0.0 -27,-0.0 0.990 360.0 360.0 -61.1 360.0 -3.8 3.5 19.7