==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 09-AUG-93 1YSA . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.E.ELLENBERGER,C.J.BRANDL,K.STRUHL,S.C.HARRISON . 114 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10251.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 106 93.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 94 82.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 225 C K 0 0 207 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.0 35.3 34.0 9.9 2 226 C D >> - 0 0 123 1,-0.1 4,-2.7 4,-0.0 3,-0.5 -0.453 360.0-105.2 -55.5 154.9 37.4 31.2 8.2 3 227 C P H 3> S+ 0 0 96 0, 0.0 4,-2.6 0, 0.0 -1,-0.1 0.841 129.1 55.0 -45.9 -34.1 35.1 28.8 6.0 4 228 C A H 3> S+ 0 0 52 2,-0.2 4,-2.5 3,-0.2 5,-0.2 0.838 108.8 45.8 -60.4 -35.2 35.7 26.4 9.1 5 229 C A H <> S+ 0 0 34 -3,-0.5 4,-1.9 2,-0.2 5,-0.4 0.990 115.9 44.4 -73.0 -54.4 34.4 29.1 11.4 6 230 C L H X S+ 0 0 77 -4,-2.7 4,-1.7 1,-0.2 5,-0.2 0.958 115.7 50.2 -46.3 -58.2 31.4 29.9 9.2 7 231 C K H X S+ 0 0 100 -4,-2.6 4,-2.9 -5,-0.2 -1,-0.2 0.886 107.9 52.0 -53.0 -46.8 30.9 26.2 8.9 8 232 C R H X S+ 0 0 175 -4,-2.5 4,-2.8 1,-0.3 5,-0.3 0.964 108.8 46.2 -64.2 -53.8 31.0 25.4 12.6 9 233 C A H X S+ 0 0 69 -4,-1.9 4,-0.8 1,-0.2 -1,-0.3 0.776 117.5 49.3 -62.0 -22.1 28.5 28.0 13.8 10 234 C R H X S+ 0 0 136 -4,-1.7 4,-1.7 -5,-0.4 -2,-0.2 0.892 110.3 44.9 -80.7 -39.3 26.3 26.8 11.0 11 235 C N H X S+ 0 0 90 -4,-2.9 4,-2.4 2,-0.2 5,-0.3 0.956 107.7 62.4 -56.8 -50.0 26.7 22.9 11.7 12 236 C T H X S+ 0 0 84 -4,-2.8 4,-1.7 1,-0.3 -1,-0.2 0.878 103.9 47.8 -44.7 -46.9 26.0 23.7 15.3 13 237 C E H X S+ 0 0 100 -4,-0.8 4,-2.3 -5,-0.3 -1,-0.3 0.911 109.8 51.4 -65.0 -41.7 22.6 25.1 14.3 14 238 C A H X S+ 0 0 43 -4,-1.7 4,-1.1 1,-0.2 -2,-0.2 0.762 108.5 51.5 -67.9 -22.5 21.8 21.9 12.2 15 239 C A H X S+ 0 0 45 -4,-2.4 4,-1.2 2,-0.1 -1,-0.2 0.849 113.0 49.4 -72.3 -37.7 22.7 19.8 15.2 16 240 C R H >X S+ 0 0 123 -4,-1.7 4,-2.0 -5,-0.3 3,-1.2 0.983 105.3 50.2 -59.7 -65.6 20.2 22.1 17.1 17 241 C R H 3X S+ 0 0 129 -4,-2.3 4,-1.8 1,-0.3 5,-0.2 0.899 113.0 54.2 -48.9 -40.3 17.1 22.0 14.7 18 242 C S H 3X S+ 0 0 28 -4,-1.1 4,-2.8 -5,-0.3 -1,-0.3 0.824 103.0 50.1 -63.8 -35.2 17.7 18.2 14.9 19 243 C R H X S+ 0 0 97 -4,-2.3 4,-1.9 -5,-0.2 3,-0.6 0.966 109.4 46.8 -56.2 -55.0 12.3 15.8 20.8 24 248 C Q H 3X S+ 0 0 108 -4,-1.7 4,-2.5 1,-0.2 5,-0.3 0.936 102.6 61.8 -58.7 -51.8 9.1 16.0 18.8 25 249 C R H 3X S+ 0 0 153 -4,-2.2 4,-1.3 1,-0.2 -1,-0.2 0.792 112.2 39.6 -41.6 -39.4 9.4 12.6 17.1 26 250 C M H X S+ 0 0 80 -4,-1.3 4,-2.2 -3,-0.4 3,-0.6 0.969 107.9 52.2 -65.2 -57.8 0.7 10.2 22.1 32 256 C K H 3X S+ 0 0 105 -4,-2.1 4,-1.5 1,-0.2 -1,-0.2 0.893 113.7 49.3 -45.4 -42.7 0.0 7.4 19.4 33 257 C V H 3X S+ 0 0 12 -4,-1.3 4,-1.1 -5,-0.3 -1,-0.2 0.833 111.9 48.5 -65.7 -34.0 0.7 5.1 22.5 34 258 C E H XX S+ 0 0 129 -4,-1.7 4,-2.2 -3,-0.6 3,-0.8 0.991 112.5 44.4 -59.6 -66.5 -1.7 7.1 24.7 35 259 C E H 3X S+ 0 0 108 -4,-2.2 4,-2.8 1,-0.3 -2,-0.2 0.818 107.9 59.4 -56.4 -34.1 -4.8 7.2 22.3 36 260 C L H 3X S+ 0 0 23 -4,-1.5 4,-2.9 -5,-0.4 -1,-0.3 0.903 107.0 46.9 -66.5 -39.9 -4.4 3.6 21.4 37 261 C L H < S+ 0 0 45 -4,-2.9 3,-0.6 -5,-0.3 4,-0.4 0.965 99.6 56.1 -53.5 -53.6 -21.7 -9.0 24.7 52 276 C K H 3< S+ 0 0 177 -4,-2.0 2,-2.3 -5,-0.3 -2,-0.2 0.943 97.7 59.6 -52.1 -53.6 -24.1 -8.8 27.7 53 277 C L T 3< S+ 0 0 90 -4,-1.2 -1,-0.2 1,-0.1 -2,-0.1 -0.176 122.1 19.2 -78.4 53.7 -27.3 -8.5 25.6 54 278 C V S < S- 0 0 79 -2,-2.3 2,-0.2 -3,-0.6 -2,-0.1 -0.395 113.5 -43.9 177.8 -93.2 -26.6 -12.0 23.8 55 279 C G - 0 0 35 -4,-0.4 2,-0.5 2,-0.0 -1,-0.1 -0.768 43.6-103.2-141.6-172.9 -24.1 -14.7 25.3 56 280 C E 0 0 169 -2,-0.2 -4,-0.0 1,-0.0 -5,-0.0 -0.996 360.0 360.0-113.3 138.4 -20.7 -15.3 27.0 57 281 C R 0 0 234 -2,-0.5 -2,-0.0 0, 0.0 -1,-0.0 -0.511 360.0 360.0-154.2 360.0 -18.1 -16.8 24.7 58 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 59 224 D M 0 0 222 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -24.9 52.6 15.1 29.6 60 225 D K - 0 0 165 0, 0.0 4,-0.3 0, 0.0 3,-0.2 -0.358 360.0 -47.1-139.9-154.8 49.5 13.0 30.7 61 226 D D + 0 0 104 2,-0.2 4,-0.4 1,-0.2 5,-0.1 -0.319 60.0 119.8 -92.2 50.7 46.0 11.8 31.9 62 227 D P S >> S+ 0 0 116 0, 0.0 3,-1.6 0, 0.0 4,-0.9 0.931 102.4 29.7 -59.5 -64.9 44.5 13.8 34.9 63 228 D A H 3> S+ 0 0 61 1,-0.3 4,-1.9 -3,-0.2 5,-0.2 0.790 103.7 78.2 -64.1 -34.5 41.8 14.7 32.6 64 229 D A H 3> S+ 0 0 34 -4,-0.3 4,-1.1 1,-0.2 -1,-0.3 0.696 96.7 51.2 -55.2 -14.5 42.0 11.4 30.5 65 230 D L H <> S+ 0 0 98 -3,-1.6 4,-1.4 -4,-0.4 5,-0.3 0.900 106.4 52.7 -79.2 -43.9 40.1 9.7 33.3 66 231 D K H X S+ 0 0 168 -4,-0.9 4,-2.2 2,-0.2 -2,-0.2 0.928 115.4 41.1 -58.2 -46.1 37.3 12.4 33.4 67 232 D R H X S+ 0 0 174 -4,-1.9 4,-2.6 2,-0.2 5,-0.4 0.992 109.7 54.9 -65.9 -57.2 36.6 12.0 29.6 68 233 D A H < S+ 0 0 62 -4,-1.1 4,-0.3 1,-0.2 -1,-0.2 0.734 117.2 41.7 -54.5 -18.9 36.9 8.1 29.3 69 234 D R H >X S+ 0 0 166 -4,-1.4 4,-2.7 2,-0.2 3,-0.6 0.841 113.5 48.1 -88.6 -46.7 34.2 8.1 32.1 70 235 D N H 3X S+ 0 0 110 -4,-2.2 4,-2.9 -5,-0.3 -2,-0.2 0.959 111.0 55.0 -54.2 -50.1 31.9 10.9 30.8 71 236 D T H 3X S+ 0 0 68 -4,-2.6 4,-1.6 2,-0.2 -1,-0.3 0.744 106.4 49.6 -52.0 -36.6 32.1 9.2 27.4 72 237 D E H <> S+ 0 0 85 -3,-0.6 4,-2.6 -5,-0.4 -2,-0.2 0.958 109.7 52.2 -64.3 -50.3 30.9 5.9 29.0 73 238 D A H >X S+ 0 0 36 -4,-2.7 4,-2.3 1,-0.3 3,-0.8 0.917 108.4 48.9 -52.7 -57.1 28.0 8.0 30.6 74 239 D A H 3X S+ 0 0 25 -4,-2.9 4,-2.2 1,-0.2 -1,-0.3 0.859 110.5 52.8 -54.0 -38.1 27.0 9.5 27.1 75 240 D R H 3X S+ 0 0 168 -4,-1.6 4,-1.7 1,-0.2 -1,-0.2 0.911 114.8 42.9 -53.8 -40.1 27.1 5.8 25.7 76 241 D R H X S+ 0 0 94 -4,-2.2 4,-1.3 1,-0.2 3,-1.1 0.998 109.5 54.6 -59.9 -58.0 -5.5 -5.8 19.7 99 264 D N H 3X S+ 0 0 0 -4,-2.6 4,-3.0 1,-0.3 -2,-0.2 0.773 101.7 54.3 -62.0 -30.6 -7.9 -3.0 18.7 100 265 D Y H 3X S+ 0 0 167 -4,-1.9 4,-2.7 1,-0.2 -1,-0.3 0.961 108.8 51.6 -59.5 -38.6 -8.7 -4.2 15.1 101 266 D H H X S+ 0 0 94 -4,-2.6 3,-2.5 -5,-0.2 4,-2.4 0.985 111.6 46.0 -63.0 -63.4 -20.1 -9.0 14.8 109 274 D L H 3X S+ 0 0 1 -4,-2.7 4,-2.2 1,-0.3 5,-0.5 0.857 111.1 54.4 -54.6 -35.6 -22.0 -8.6 18.1 110 275 D K H 3< S+ 0 0 31 -4,-2.2 5,-0.5 -5,-0.2 -1,-0.3 0.551 113.0 44.9 -71.7 -6.9 -23.8 -5.5 16.5 111 276 D K H <4 S+ 0 0 168 -3,-2.5 -2,-0.2 -4,-0.5 -1,-0.2 0.643 109.3 53.0 -96.3 -34.7 -24.9 -7.9 13.7 112 277 D L H < S- 0 0 87 -4,-2.4 -2,-0.2 -5,-0.2 -3,-0.2 0.988 142.0 -7.1 -55.9 -53.7 -25.8 -10.8 16.0 113 278 D V S < S- 0 0 67 -4,-2.2 2,-0.2 -5,-0.2 -3,-0.2 0.816 107.7 -86.9-102.8 -85.4 -28.1 -8.2 17.8 114 279 D G 0 0 29 -5,-0.5 -3,-0.2 -64,-0.0 -1,-0.0 -0.760 360.0 360.0 155.9 157.5 -27.8 -4.5 16.7 115 280 D E 0 0 188 -5,-0.5 -8,-0.0 -2,-0.2 -4,-0.0 0.084 360.0 360.0 -50.5 360.0 -26.5 -0.9 16.5