==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 03-APR-07 2YS8 . COMPND 2 MOLECULE: RAB-RELATED GTP-BINDING PROTEIN RABJ; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,M.SATO,S.KOSHIBA,T.HARADA,S.WATANABE,T.KIGAWA, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6674.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 63.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 44 48.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-156.7 -13.3 -9.8 25.1 2 2 A S - 0 0 123 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.986 360.0-125.2-135.7 145.0 -13.4 -10.3 21.3 3 3 A S + 0 0 129 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.648 31.4 173.8 -89.4 143.7 -14.7 -8.2 18.4 4 4 A G - 0 0 73 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.987 12.2-173.6-152.9 140.4 -17.2 -9.7 15.9 5 5 A S - 0 0 122 -2,-0.3 2,-0.5 58,-0.1 -2,-0.0 -0.998 19.4-135.5-137.6 138.0 -19.2 -8.5 13.0 6 6 A S - 0 0 115 -2,-0.4 3,-0.2 1,-0.1 -2,-0.0 -0.801 17.4-180.0 -95.4 126.4 -21.8 -10.2 10.8 7 7 A G + 0 0 36 -2,-0.5 -1,-0.1 1,-0.2 57,-0.1 -0.244 21.2 150.8-118.0 44.6 -21.6 -9.7 7.1 8 8 A S + 0 0 127 55,-0.1 2,-0.2 2,-0.0 -1,-0.2 0.887 62.8 66.6 -38.9 -54.6 -24.6 -11.8 5.9 9 9 A S + 0 0 106 -3,-0.2 2,-0.3 53,-0.0 0, 0.0 -0.520 64.9 179.2 -75.0 136.7 -25.0 -9.5 2.9 10 10 A A + 0 0 59 -2,-0.2 2,-0.5 52,-0.1 52,-0.1 -0.851 8.3 162.4-144.2 104.2 -22.1 -9.5 0.3 11 11 A S + 0 0 92 -2,-0.3 50,-0.4 50,-0.1 2,-0.3 -0.959 24.8 110.9-128.0 115.0 -22.2 -7.4 -2.8 12 12 A F - 0 0 86 -2,-0.5 2,-0.1 48,-0.1 48,-0.1 -0.965 57.1 -89.0-165.8 176.0 -19.1 -6.6 -4.8 13 13 A T > - 0 0 80 -2,-0.3 4,-1.9 1,-0.1 5,-0.2 -0.397 38.9-106.4 -93.0 172.8 -17.3 -7.2 -8.1 14 14 A K H > S+ 0 0 160 2,-0.2 4,-3.3 1,-0.2 5,-0.3 0.942 116.0 58.9 -63.6 -49.3 -14.8 -10.0 -9.0 15 15 A E H > S+ 0 0 122 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.918 109.1 44.8 -45.0 -54.9 -11.8 -7.7 -8.9 16 16 A Q H >> S+ 0 0 16 2,-0.2 4,-1.8 1,-0.2 3,-1.3 0.982 114.0 46.6 -54.7 -65.9 -12.5 -6.9 -5.2 17 17 A A H 3X S+ 0 0 35 -4,-1.9 4,-2.5 1,-0.3 5,-0.2 0.894 110.4 54.6 -43.3 -50.7 -13.2 -10.4 -4.1 18 18 A D H 3X S+ 0 0 62 -4,-3.3 4,-1.9 1,-0.2 -1,-0.3 0.851 107.5 52.7 -54.1 -36.4 -10.1 -11.7 -5.9 19 19 A A H < S+ 0 0 7 -4,-2.8 3,-1.6 1,-0.2 -2,-0.2 0.945 112.1 45.0 -58.8 -51.3 -4.4 -11.1 0.6 24 24 A R H 3< S+ 0 0 168 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.724 122.7 39.7 -65.9 -20.9 -5.8 -13.6 3.0 25 25 A N T 3< S+ 0 0 79 -4,-0.8 -1,-0.3 -5,-0.2 2,-0.3 0.136 91.2 122.9-113.2 16.9 -4.0 -16.3 1.0 26 26 A S < - 0 0 25 -3,-1.6 3,-0.1 1,-0.1 -3,-0.1 -0.589 47.9-160.9 -82.9 141.2 -0.9 -14.2 0.4 27 27 A K S S+ 0 0 166 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.403 75.9 5.1 -98.9 -0.2 2.5 -15.6 1.5 28 28 A D S > S- 0 0 104 1,-0.1 4,-1.4 -5,-0.1 -1,-0.1 -0.974 79.0 -96.9-168.2 173.2 4.1 -12.2 1.5 29 29 A S H >>S+ 0 0 24 -2,-0.3 4,-2.3 1,-0.2 5,-0.5 0.905 115.8 62.2 -69.1 -42.7 3.6 -8.4 1.0 30 30 A W H >>S+ 0 0 54 1,-0.2 4,-2.3 2,-0.2 5,-2.0 0.894 104.9 48.3 -49.4 -45.5 4.7 -8.5 -2.6 31 31 A D H 45S+ 0 0 91 3,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.929 111.2 50.5 -62.4 -47.1 1.8 -10.8 -3.4 32 32 A M H <5S+ 0 0 32 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.1 0.982 119.6 33.5 -54.6 -66.0 -0.7 -8.7 -1.6 33 33 A L H <5S- 0 0 11 -4,-2.3 -1,-0.2 39,-0.1 -2,-0.2 0.828 110.0-126.1 -61.0 -32.1 0.2 -5.4 -3.3 34 34 A G T << + 0 0 59 -4,-2.3 2,-0.3 -5,-0.5 -3,-0.2 0.871 64.9 119.1 86.8 41.4 1.0 -7.3 -6.4 35 35 A V < - 0 0 29 -5,-2.0 -1,-0.3 -6,-0.2 -2,-0.1 -0.804 65.1 -90.8-131.2 172.6 4.5 -6.1 -7.0 36 36 A K > - 0 0 105 -2,-0.3 3,-1.4 1,-0.1 8,-0.1 -0.522 31.2-119.5 -85.5 152.8 8.1 -7.5 -7.3 37 37 A P T 3 S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 -8,-0.0 0.426 112.6 58.4 -69.7 3.1 10.4 -7.8 -4.3 38 38 A G T 3 S+ 0 0 64 2,-0.0 2,-0.1 0, 0.0 -2,-0.0 0.013 80.8 118.1-122.2 27.4 12.8 -5.4 -6.2 39 39 A A < - 0 0 8 -3,-1.4 2,-0.2 1,-0.1 -4,-0.0 -0.351 59.4-114.8 -88.6 172.2 10.5 -2.4 -6.6 40 40 A S >> - 0 0 73 -2,-0.1 4,-2.4 1,-0.1 3,-0.9 -0.623 32.7 -97.3-105.6 165.8 10.9 1.1 -5.3 41 41 A R H 3> S+ 0 0 160 1,-0.3 4,-2.5 2,-0.2 5,-0.2 0.882 126.2 54.5 -45.8 -45.3 8.9 3.1 -2.7 42 42 A D H 3> S+ 0 0 121 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.883 111.0 45.8 -58.0 -40.1 7.1 4.8 -5.6 43 43 A E H <> S+ 0 0 68 -3,-0.9 4,-2.3 2,-0.2 5,-0.3 0.980 111.5 48.5 -67.5 -58.8 6.2 1.3 -7.0 44 44 A V H X S+ 0 0 0 -4,-2.4 4,-2.3 1,-0.3 -2,-0.2 0.882 114.6 48.1 -48.8 -43.5 5.0 -0.2 -3.7 45 45 A N H X S+ 0 0 22 -4,-2.5 4,-2.9 -5,-0.3 -1,-0.3 0.900 107.2 56.0 -65.7 -42.0 2.9 2.9 -3.1 46 46 A K H X S+ 0 0 118 -4,-1.9 4,-2.1 -5,-0.2 5,-0.2 0.934 112.9 40.4 -55.9 -49.8 1.4 2.8 -6.6 47 47 A A H X S+ 0 0 2 -4,-2.3 4,-2.0 1,-0.2 5,-0.2 0.886 114.9 52.6 -67.2 -39.8 0.2 -0.8 -6.1 48 48 A Y H X S+ 0 0 39 -4,-2.3 4,-2.9 -5,-0.3 -2,-0.2 0.870 111.3 48.1 -64.1 -37.6 -0.9 -0.0 -2.5 49 49 A R H X S+ 0 0 156 -4,-2.9 4,-2.5 2,-0.2 5,-0.3 0.994 111.3 45.5 -66.3 -64.9 -2.9 3.0 -3.7 50 50 A K H X S+ 0 0 135 -4,-2.1 4,-1.1 1,-0.2 -2,-0.2 0.883 120.1 43.7 -45.6 -45.6 -4.8 1.4 -6.6 51 51 A L H >X S+ 0 0 29 -4,-2.0 4,-2.9 -5,-0.2 3,-1.3 0.971 107.2 57.2 -66.1 -55.7 -5.6 -1.6 -4.4 52 52 A A H 3X S+ 0 0 8 -4,-2.9 4,-1.4 1,-0.3 -2,-0.2 0.872 105.6 52.8 -42.0 -46.8 -6.5 0.4 -1.3 53 53 A V H 3< S+ 0 0 84 -4,-2.5 -1,-0.3 2,-0.2 -2,-0.2 0.863 112.2 45.1 -59.8 -37.1 -9.2 2.2 -3.4 54 54 A L H << S+ 0 0 48 -3,-1.3 -2,-0.2 -4,-1.1 -1,-0.2 0.892 121.1 37.3 -74.0 -41.5 -10.5 -1.2 -4.4 55 55 A L H < S+ 0 0 0 -4,-2.9 14,-0.4 -5,-0.1 -2,-0.2 0.498 91.0 129.2 -87.5 -5.0 -10.4 -2.6 -0.9 56 56 A H >X - 0 0 75 -4,-1.4 4,-3.3 -5,-0.4 3,-1.3 -0.165 67.2-128.8 -52.0 140.8 -11.5 0.7 0.5 57 57 A P T 34 S+ 0 0 66 0, 0.0 -1,-0.2 0, 0.0 9,-0.1 0.554 109.7 56.2 -69.8 -7.0 -14.4 0.5 3.0 58 58 A D T 34 S+ 0 0 118 -5,-0.1 3,-0.1 1,-0.0 -2,-0.1 0.546 118.7 29.2 -99.9 -12.2 -16.1 3.3 0.9 59 59 A K T <4 S+ 0 0 115 -3,-1.3 2,-0.6 1,-0.2 -5,-0.1 0.660 122.4 47.2-115.7 -32.6 -15.9 1.4 -2.4 60 60 A C < + 0 0 0 -4,-3.3 -1,-0.2 1,-0.1 -48,-0.1 -0.895 53.3 179.3-118.9 102.0 -16.1 -2.2 -1.2 61 61 A V + 0 0 107 -2,-0.6 -1,-0.1 -50,-0.4 -49,-0.1 0.317 40.9 135.9 -81.0 9.5 -18.8 -2.9 1.3 62 62 A A > - 0 0 8 1,-0.1 4,-0.6 -52,-0.1 -52,-0.1 -0.148 67.6-120.8 -57.1 152.3 -17.7 -6.6 1.3 63 63 A P T 4 S+ 0 0 79 0, 0.0 4,-0.3 0, 0.0 -1,-0.1 0.659 114.7 37.6 -69.7 -16.1 -17.3 -8.4 4.6 64 64 A G T > S+ 0 0 20 2,-0.1 4,-2.5 1,-0.1 3,-0.3 0.672 89.3 88.2-106.7 -25.1 -13.7 -9.0 3.9 65 65 A S H > S+ 0 0 5 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.812 89.5 56.6 -42.9 -34.8 -12.8 -5.7 2.2 66 66 A E H X S+ 0 0 110 -4,-0.6 4,-1.8 2,-0.2 -1,-0.2 0.978 108.0 42.7 -63.3 -58.6 -12.0 -4.5 5.7 67 67 A D H > S+ 0 0 78 -4,-0.3 4,-2.2 -3,-0.3 -2,-0.2 0.910 112.4 56.1 -54.7 -45.7 -9.5 -7.1 6.6 68 68 A A H X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.2 3,-0.2 0.950 104.7 50.5 -51.9 -56.7 -7.9 -6.8 3.2 69 69 A F H X S+ 0 0 47 -4,-2.2 4,-1.7 -14,-0.4 -1,-0.2 0.872 109.0 54.0 -50.4 -40.9 -7.3 -3.1 3.6 70 70 A K H X S+ 0 0 132 -4,-1.8 4,-1.7 1,-0.2 -1,-0.2 0.925 107.7 49.2 -61.0 -46.5 -5.7 -3.8 6.9 71 71 A A H X S+ 0 0 21 -4,-2.2 4,-2.2 -3,-0.2 -2,-0.2 0.951 104.6 58.2 -58.3 -52.9 -3.3 -6.4 5.4 72 72 A V H X S+ 0 0 0 -4,-2.3 4,-2.9 1,-0.2 3,-0.3 0.907 104.9 51.6 -42.7 -55.0 -2.2 -4.1 2.6 73 73 A V H X>S+ 0 0 49 -4,-1.7 4,-1.7 1,-0.3 5,-0.6 0.947 109.0 48.4 -48.6 -59.4 -1.0 -1.5 5.2 74 74 A N H X5S+ 0 0 127 -4,-1.7 4,-0.9 1,-0.2 -1,-0.3 0.829 116.4 47.6 -52.1 -33.7 1.1 -4.0 7.1 75 75 A A H X5S+ 0 0 1 -4,-2.2 4,-3.4 -3,-0.3 -2,-0.2 0.993 118.9 33.4 -71.5 -67.7 2.5 -5.1 3.8 76 76 A R H X5S+ 0 0 59 -4,-2.9 4,-3.0 1,-0.2 5,-0.3 0.977 118.8 51.0 -52.3 -67.2 3.4 -1.7 2.1 77 77 A T H X5S+ 0 0 60 -4,-1.7 4,-1.5 -5,-0.2 -1,-0.2 0.856 116.8 43.7 -38.5 -47.2 4.3 0.1 5.3 78 78 A A H XX S+ 0 0 14 -4,-3.4 4,-2.5 1,-0.2 3,-1.1 0.916 107.3 56.5 -45.4 -53.7 8.2 -3.3 2.7 80 80 A L H 3X S+ 0 0 22 -4,-3.0 4,-1.2 1,-0.3 -1,-0.2 0.913 100.7 57.4 -45.3 -52.7 8.9 0.5 2.5 81 81 A K H 3< S+ 0 0 155 -4,-1.5 3,-0.3 -3,-0.3 -1,-0.3 0.859 111.6 43.0 -48.1 -39.6 10.9 0.3 5.7 82 82 A N H << S+ 0 0 134 -4,-1.3 -1,-0.3 -3,-1.1 -2,-0.2 0.853 95.7 77.2 -76.2 -36.4 13.1 -2.4 4.0 83 83 A I H < S+ 0 0 55 -4,-2.5 2,-0.2 -5,-0.2 -1,-0.2 0.840 72.0 98.9 -40.7 -41.3 13.2 -0.4 0.7 84 84 A K < - 0 0 126 -4,-1.2 -3,-0.0 -3,-0.3 0, 0.0 -0.329 55.0-173.3 -54.9 115.0 15.8 1.8 2.5 85 85 A S + 0 0 127 -2,-0.2 -1,-0.2 1,-0.1 -2,-0.0 0.944 68.1 36.4 -77.1 -52.0 19.2 0.5 1.3 86 86 A G S S- 0 0 42 1,-0.0 2,-1.0 0, 0.0 -1,-0.1 -0.820 91.8-106.3-108.0 145.3 21.4 2.6 3.5 87 87 A P - 0 0 124 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 -0.530 33.2-175.5 -69.7 100.6 20.7 3.7 7.1 88 88 A S + 0 0 112 -2,-1.0 2,-0.1 2,-0.1 -3,-0.0 0.973 68.9 36.9 -60.7 -57.6 19.8 7.4 6.9 89 89 A S 0 0 115 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.428 360.0 360.0 -92.5 169.5 19.6 8.0 10.6 90 90 A G 0 0 122 -2,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.416 360.0 360.0 105.1 360.0 21.7 6.5 13.4