==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 05-APR-07 2YT7 . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,M.SEIKI, . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7011.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 68.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 23.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 2,-1.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-168.8 -4.7 2.9 -27.8 2 2 A S - 0 0 130 1,-0.1 2,-0.6 2,-0.1 0, 0.0 -0.565 360.0-141.1 -73.5 95.7 -1.7 1.9 -25.7 3 3 A S + 0 0 134 -2,-1.3 2,-0.2 1,-0.1 -1,-0.1 -0.425 45.2 141.7 -61.5 108.6 -1.8 4.4 -22.9 4 4 A G + 0 0 62 -2,-0.6 2,-0.3 2,-0.0 -2,-0.1 -0.664 16.0 118.1-156.8 95.5 1.8 5.4 -22.3 5 5 A S S > S- 0 0 113 -2,-0.2 2,-0.9 3,-0.1 3,-0.8 -0.987 71.5 -75.0-155.0 158.8 2.9 8.9 -21.4 6 6 A S T 3 S+ 0 0 136 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 -0.393 99.8 81.3 -59.7 98.5 4.6 10.9 -18.6 7 7 A G T 3 S+ 0 0 57 -2,-0.9 2,-0.7 1,-0.2 -1,-0.2 0.231 76.4 52.3-162.8 -55.2 1.8 11.1 -16.1 8 8 A D < - 0 0 148 -3,-0.8 2,-0.8 2,-0.0 -1,-0.2 -0.888 55.4-177.4-106.0 111.2 1.3 8.0 -13.9 9 9 A N + 0 0 119 -2,-0.7 88,-0.5 -3,-0.1 2,-0.2 -0.776 38.5 107.7-109.8 87.3 4.5 6.9 -12.1 10 10 A C - 0 0 52 -2,-0.8 2,-0.4 86,-0.3 86,-0.2 -0.840 56.5-125.5-145.9-178.4 3.7 3.7 -10.2 11 11 A R E -A 95 0A 123 84,-1.7 84,-1.2 -2,-0.2 2,-0.6 -0.937 15.5-140.9-143.1 116.6 4.2 -0.1 -10.1 12 12 A E E -A 94 0A 132 -2,-0.4 2,-0.6 82,-0.2 82,-0.2 -0.654 21.8-177.1 -79.6 117.1 1.4 -2.7 -10.0 13 13 A V E -A 93 0A 21 80,-2.9 80,-2.9 -2,-0.6 2,-0.3 -0.903 5.7-165.1-120.7 103.5 2.5 -5.6 -7.7 14 14 A H E -A 92 0A 122 -2,-0.6 2,-0.3 78,-0.3 78,-0.2 -0.623 8.8-172.9 -87.5 144.8 -0.0 -8.5 -7.5 15 15 A L E -A 91 0A 17 76,-1.4 76,-1.3 -2,-0.3 2,-0.4 -0.828 20.2-133.3-131.3 169.9 0.3 -11.1 -4.8 16 16 A E E +A 90 0A 161 33,-0.3 74,-0.3 -2,-0.3 2,-0.2 -0.919 31.1 165.7-131.9 107.3 -1.4 -14.4 -3.8 17 17 A K - 0 0 9 72,-2.1 2,-0.4 -2,-0.4 6,-0.1 -0.585 37.8 -97.2-112.2 175.9 -2.5 -14.9 -0.2 18 18 A R > - 0 0 195 -2,-0.2 3,-1.6 1,-0.1 72,-0.0 -0.785 51.8 -86.2 -98.6 138.0 -4.7 -17.5 1.5 19 19 A R T 3 S+ 0 0 218 -2,-0.4 68,-0.2 1,-0.3 69,-0.2 -0.125 120.3 10.1 -41.7 112.4 -8.4 -16.8 2.3 20 20 A G T 3 S+ 0 0 43 66,-1.9 2,-0.5 68,-0.3 -1,-0.3 0.798 95.0 145.8 83.0 30.4 -8.2 -15.0 5.7 21 21 A E < - 0 0 64 65,-1.6 -1,-0.3 -3,-1.6 2,-0.1 -0.891 57.3-108.3-106.1 125.9 -4.4 -14.6 5.7 22 22 A G - 0 0 47 -2,-0.5 -4,-0.1 1,-0.2 61,-0.1 -0.273 21.1-139.7 -52.4 119.2 -2.8 -11.5 7.2 23 23 A L - 0 0 10 59,-0.2 27,-1.1 60,-0.1 28,-0.3 0.867 29.8-135.0 -48.2 -41.0 -1.5 -9.3 4.4 24 24 A G + 0 0 19 1,-0.3 21,-1.4 24,-0.1 2,-0.3 0.930 55.5 127.1 83.2 50.6 1.5 -8.6 6.5 25 25 A V E -B 44 0A 40 19,-0.2 2,-0.4 25,-0.1 -1,-0.3 -0.985 41.5-159.7-139.9 149.4 1.8 -4.9 6.0 26 26 A A E -B 43 0A 35 17,-2.2 17,-2.0 -2,-0.3 16,-2.0 -0.922 14.8-179.6-134.4 108.9 2.1 -1.8 8.3 27 27 A L E -B 41 0A 17 -2,-0.4 2,-0.3 14,-0.3 14,-0.2 -0.710 2.8-173.6-105.7 157.8 1.3 1.7 7.1 28 28 A V E -B 40 0A 64 12,-2.0 12,-1.1 -2,-0.3 2,-0.4 -0.832 33.9 -80.4-139.8 177.3 1.4 5.0 8.9 29 29 A E E -B 39 0A 139 -2,-0.3 2,-0.3 10,-0.1 10,-0.1 -0.713 43.1-164.8 -87.5 128.8 0.6 8.7 8.5 30 30 A S - 0 0 24 8,-1.0 8,-0.4 -2,-0.4 45,-0.1 -0.869 17.6-167.5-114.8 147.4 3.0 10.8 6.5 31 31 A G + 0 0 68 -2,-0.3 -1,-0.1 6,-0.2 3,-0.0 0.847 55.8 103.9 -97.4 -44.7 3.3 14.5 6.3 32 32 A W + 0 0 227 1,-0.1 2,-0.3 5,-0.1 6,-0.2 -0.002 56.9 76.6 -39.2 140.0 5.7 15.0 3.4 33 33 A G S S- 0 0 65 1,-0.1 -1,-0.1 4,-0.1 -2,-0.1 -0.994 80.2 -93.4 155.2-147.9 3.9 16.2 0.2 34 34 A S S S- 0 0 130 2,-0.6 -1,-0.1 -2,-0.3 -2,-0.0 0.550 100.2 -11.1-133.5 -54.4 2.2 19.3 -1.3 35 35 A L S S+ 0 0 164 1,-0.4 -2,-0.0 2,-0.1 0, 0.0 0.686 128.1 27.1-119.9 -49.0 -1.5 19.4 -0.5 36 36 A L S S- 0 0 71 1,-0.1 -2,-0.6 -4,-0.0 -1,-0.4 -0.862 81.2-106.9-120.8 155.1 -2.4 16.0 1.0 37 37 A P - 0 0 51 0, 0.0 35,-0.5 0, 0.0 2,-0.3 -0.075 30.9-134.5 -69.7 174.3 -0.5 13.3 2.9 38 38 A T - 0 0 38 -8,-0.4 -8,-1.0 -6,-0.2 2,-0.7 -0.896 18.3-104.4-132.1 161.6 0.6 10.0 1.5 39 39 A A E -BC 29 62A 13 23,-0.8 23,-2.3 -2,-0.3 2,-0.4 -0.777 38.8-175.5 -90.8 112.5 0.6 6.3 2.6 40 40 A V E -BC 28 61A 37 -12,-1.1 -12,-2.0 -2,-0.7 2,-0.7 -0.919 30.3-116.8-112.3 132.2 4.1 5.2 3.7 41 41 A I E -B 27 0A 10 19,-1.9 18,-1.3 -2,-0.4 -14,-0.3 -0.519 30.0-178.2 -68.1 109.1 4.9 1.6 4.7 42 42 A A E - 0 0 26 -16,-2.0 2,-0.3 -2,-0.7 -15,-0.2 0.934 65.6 -10.2 -73.6 -48.5 6.0 1.8 8.4 43 43 A N E -B 26 0A 104 -17,-2.0 -17,-2.2 15,-0.0 2,-0.4 -0.970 59.4-148.3-149.3 161.9 6.8 -1.9 8.8 44 44 A L E -B 25 0A 23 -2,-0.3 2,-1.2 -19,-0.2 -19,-0.2 -0.995 27.1-113.9-137.7 142.1 6.4 -5.2 7.0 45 45 A L > - 0 0 98 -21,-1.4 2,-1.6 -2,-0.4 3,-0.9 -0.604 31.7-136.0 -76.7 96.7 5.9 -8.8 8.2 46 46 A H T 3 S+ 0 0 158 -2,-1.2 -1,-0.1 1,-0.3 -22,-0.0 -0.296 94.4 33.9 -54.9 86.4 9.2 -10.4 7.1 47 47 A G T 3 S+ 0 0 57 -2,-1.6 -1,-0.3 -23,-0.1 -23,-0.0 0.559 92.4 114.5 134.2 32.3 7.5 -13.6 5.8 48 48 A G S <> S- 0 0 13 -3,-0.9 4,-2.4 -24,-0.2 -24,-0.1 -0.556 78.8 -94.3-118.3-176.2 4.1 -12.6 4.3 49 49 A P T 4 S+ 0 0 5 0, 0.0 -33,-0.3 0, 0.0 4,-0.2 0.765 124.7 43.1 -69.8 -26.3 2.4 -12.5 0.9 50 50 A A T >4 S+ 0 0 0 -27,-1.1 3,-0.7 2,-0.1 6,-0.4 0.891 118.4 41.4 -85.6 -45.8 3.4 -8.8 0.5 51 51 A E G >4 S+ 0 0 54 -6,-0.3 3,-2.6 -28,-0.3 -5,-0.1 0.930 99.3 71.9 -67.9 -46.9 7.0 -9.1 1.7 52 52 A R G 3< S+ 0 0 177 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.1 0.755 87.0 71.3 -40.2 -27.0 7.6 -12.4 -0.1 53 53 A S G < S- 0 0 46 -3,-0.7 -1,-0.3 -4,-0.2 -2,-0.2 0.918 88.2-153.5 -58.7 -45.8 7.5 -10.2 -3.2 54 54 A G S < S+ 0 0 57 -3,-2.6 -1,-0.1 -4,-0.4 -2,-0.1 -0.105 78.8 76.1 96.6 -36.4 10.9 -8.6 -2.3 55 55 A A S S+ 0 0 46 -5,-0.1 2,-0.7 1,-0.1 -4,-0.1 0.945 79.0 73.5 -72.1 -50.6 10.1 -5.4 -4.2 56 56 A L + 0 0 7 -6,-0.4 -2,-0.3 -5,-0.1 2,-0.3 -0.551 67.6 158.6 -70.5 111.0 7.7 -3.9 -1.6 57 57 A S > - 0 0 59 -2,-0.7 3,-1.3 -4,-0.1 -16,-0.2 -0.935 50.3 -66.9-134.5 157.0 9.9 -2.8 1.3 58 58 A I T 3 S+ 0 0 90 -2,-0.3 2,-0.2 1,-0.2 -16,-0.2 -0.076 117.1 32.5 -41.5 130.6 9.6 -0.4 4.2 59 59 A G T 3 S+ 0 0 37 -18,-1.3 -18,-0.2 1,-0.4 -1,-0.2 -0.493 79.6 120.4 118.9 -62.9 9.4 3.2 2.8 60 60 A D < - 0 0 48 -3,-1.3 -19,-1.9 -2,-0.2 2,-0.5 0.080 64.3-120.4 -35.5 145.8 7.7 2.9 -0.5 61 61 A R E -C 40 0A 53 -21,-0.2 35,-0.8 35,-0.2 -21,-0.2 -0.858 20.5-138.1-101.5 125.1 4.5 4.9 -0.7 62 62 A L E +CD 39 95A 8 -23,-2.3 -23,-0.8 -2,-0.5 33,-0.2 -0.512 21.4 177.9 -80.3 147.3 1.2 3.1 -1.4 63 63 A T E - 0 0 21 31,-2.2 7,-2.2 1,-0.5 8,-1.7 0.705 63.1 -16.8-115.3 -41.1 -1.3 4.6 -3.8 64 64 A A E -ED 69 94A 16 30,-0.7 30,-1.4 5,-0.2 -1,-0.5 -0.967 51.9-132.8-159.3 170.4 -4.1 2.0 -3.9 65 65 A I E S- D 0 93A 5 3,-0.5 28,-0.2 -2,-0.3 20,-0.0 -0.957 83.7 -19.7-139.4 118.5 -5.0 -1.6 -3.1 66 66 A N S S- 0 0 60 26,-1.9 27,-0.1 -2,-0.4 3,-0.1 0.769 136.2 -41.0 58.5 25.4 -6.8 -4.0 -5.4 67 67 A G S S+ 0 0 74 25,-0.4 2,-0.4 1,-0.1 -1,-0.2 0.874 104.3 133.0 89.9 43.5 -8.0 -1.0 -7.3 68 68 A T - 0 0 66 0, 0.0 -3,-0.5 0, 0.0 2,-0.5 -0.767 51.6-141.6-129.6 87.3 -8.8 1.4 -4.4 69 69 A S B +E 64 0A 95 -2,-0.4 -5,-0.2 -5,-0.2 4,-0.1 -0.251 30.7 167.2 -49.9 99.8 -7.4 4.9 -4.9 70 70 A L > + 0 0 5 -7,-2.2 3,-2.9 -2,-0.5 -6,-0.2 0.719 31.4 123.2 -89.7 -24.8 -6.3 5.6 -1.4 71 71 A V T 3 S+ 0 0 60 -8,-1.7 -33,-0.1 1,-0.3 -8,-0.1 -0.119 82.2 17.4 -41.5 115.3 -4.3 8.6 -2.3 72 72 A G T 3 S+ 0 0 32 -35,-0.5 -1,-0.3 1,-0.4 -2,-0.1 -0.169 99.2 111.0 111.3 -39.6 -5.7 11.5 -0.3 73 73 A L S < S- 0 0 89 -3,-2.9 -1,-0.4 1,-0.1 5,-0.0 -0.308 75.0 -98.9 -68.9 152.6 -7.6 9.4 2.3 74 74 A P >> - 0 0 70 0, 0.0 4,-1.5 0, 0.0 3,-0.8 -0.269 34.4-103.0 -69.8 157.3 -6.4 9.3 5.9 75 75 A L H 3> S+ 0 0 32 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.887 120.4 63.6 -46.0 -46.1 -4.3 6.5 7.3 76 76 A A H 3> S+ 0 0 62 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.913 101.2 50.1 -45.1 -53.7 -7.4 5.1 9.0 77 77 A A H <> S+ 0 0 28 -3,-0.8 4,-2.6 1,-0.2 3,-0.3 0.936 111.7 46.9 -52.2 -52.6 -9.0 4.4 5.6 78 78 A C H X S+ 0 0 3 -4,-1.5 4,-2.6 1,-0.2 -1,-0.2 0.835 111.9 52.6 -59.8 -33.5 -5.9 2.6 4.3 79 79 A Q H X S+ 0 0 88 -4,-2.6 4,-0.6 -5,-0.2 -1,-0.2 0.818 112.8 43.8 -72.3 -31.6 -5.8 0.7 7.6 80 80 A A H X S+ 0 0 60 -4,-2.1 4,-1.0 -3,-0.3 -2,-0.2 0.802 118.3 43.8 -82.2 -31.8 -9.4 -0.4 7.2 81 81 A A H X S+ 0 0 17 -4,-2.6 4,-1.1 -5,-0.2 -2,-0.2 0.890 108.6 55.7 -79.4 -42.7 -9.1 -1.2 3.5 82 82 A V H < S+ 0 0 19 -4,-2.6 4,-0.4 -5,-0.3 -59,-0.2 0.775 105.0 56.7 -60.7 -26.2 -5.8 -3.0 3.7 83 83 A R H >< S+ 0 0 186 -4,-0.6 3,-2.0 1,-0.2 4,-0.4 0.914 94.4 64.0 -72.0 -44.6 -7.5 -5.3 6.3 84 84 A E H >X S+ 0 0 147 -4,-1.0 3,-1.8 1,-0.3 4,-0.9 0.900 90.5 66.7 -44.7 -50.1 -10.3 -6.4 3.9 85 85 A T T 3< S+ 0 0 6 -4,-1.1 3,-0.3 1,-0.3 -65,-0.3 0.831 81.3 81.1 -41.4 -39.0 -7.7 -8.0 1.7 86 86 A K T <4 S+ 0 0 113 -3,-2.0 -66,-1.9 -4,-0.4 -65,-1.6 0.862 96.0 42.0 -34.4 -55.5 -7.2 -10.5 4.5 87 87 A S T <4 S+ 0 0 85 -3,-1.8 -1,-0.3 -4,-0.4 -2,-0.2 0.895 105.3 80.6 -62.7 -41.3 -10.2 -12.4 3.4 88 88 A Q S < S- 0 0 108 -4,-0.9 -67,-0.4 -3,-0.3 -68,-0.3 -0.265 74.5-142.9 -65.9 153.7 -9.3 -12.0 -0.2 89 89 A T S S+ 0 0 66 -70,-0.1 -72,-2.1 -69,-0.1 2,-0.3 0.354 81.5 59.3 -98.3 3.6 -6.7 -14.4 -1.7 90 90 A S E -A 16 0A 45 -74,-0.3 2,-0.3 -5,-0.2 -74,-0.2 -0.930 57.8-171.2-132.4 156.0 -5.1 -11.7 -3.9 91 91 A V E -A 15 0A 0 -76,-1.3 -76,-1.4 -2,-0.3 2,-0.8 -0.886 5.9-165.2-152.3 116.0 -3.5 -8.3 -3.2 92 92 A T E -A 14 0A 25 -2,-0.3 -26,-1.9 -78,-0.2 2,-0.4 -0.853 13.2-171.2-106.1 101.2 -2.5 -5.7 -5.8 93 93 A L E -AD 13 65A 12 -80,-2.9 -80,-2.9 -2,-0.8 2,-0.5 -0.779 4.0-166.2 -94.8 131.9 -0.2 -3.1 -4.3 94 94 A S E +AD 12 64A 14 -30,-1.4 -31,-2.2 -2,-0.4 -30,-0.7 -0.929 16.3 165.8-122.2 108.2 0.7 0.0 -6.3 95 95 A I E -AD 11 62A 8 -84,-1.2 -84,-1.7 -2,-0.5 2,-0.4 -0.507 41.9 -82.4-110.5-179.3 3.6 2.2 -5.2 96 96 A V - 0 0 53 -35,-0.8 2,-0.6 -86,-0.2 -86,-0.3 -0.711 29.5-159.1 -89.3 133.8 5.7 4.9 -6.7 97 97 A H + 0 0 101 -88,-0.5 -87,-0.1 -2,-0.4 -1,-0.0 -0.694 19.2 177.8-113.1 77.9 8.6 4.0 -9.0 98 98 A C - 0 0 100 -2,-0.6 -2,-0.0 1,-0.1 3,-0.0 -0.564 31.7-108.4 -82.5 143.1 10.9 7.0 -9.0 99 99 A P - 0 0 101 0, 0.0 2,-1.2 0, 0.0 -1,-0.1 -0.335 37.6 -96.3 -69.7 149.2 14.2 6.9 -10.9 100 100 A P 0 0 135 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.516 360.0 360.0 -69.7 94.8 17.6 6.7 -9.1 101 101 A V 0 0 188 -2,-1.2 -3,-0.0 -3,-0.0 0, 0.0 0.274 360.0 360.0 -50.1 360.0 18.7 10.3 -9.0