==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 05-APR-07 2YT8 . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,M.SEIKI, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6482.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 70.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 26.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 17.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 159.5 -6.8 20.9 -6.5 2 2 A S + 0 0 126 1,-0.2 2,-1.2 0, 0.0 0, 0.0 0.748 360.0 72.4-111.8 -46.1 -8.0 21.4 -10.1 3 3 A S + 0 0 125 2,-0.1 2,-0.5 1,-0.0 -1,-0.2 -0.625 63.9 169.6 -78.3 98.6 -5.5 19.3 -12.2 4 4 A G - 0 0 69 -2,-1.2 2,-0.9 -3,-0.1 -1,-0.0 -0.952 23.5-163.8-118.3 123.5 -6.5 15.7 -11.5 5 5 A S - 0 0 117 -2,-0.5 3,-0.5 3,-0.1 2,-0.2 -0.738 17.3-149.3-105.3 84.3 -5.2 12.8 -13.4 6 6 A S + 0 0 132 -2,-0.9 3,-0.1 1,-0.2 -2,-0.0 -0.318 62.7 86.8 -54.9 116.8 -7.5 9.9 -12.6 7 7 A G S S+ 0 0 56 1,-0.3 2,-0.4 -2,-0.2 -1,-0.2 -0.044 70.9 48.9-170.6 -75.1 -5.4 6.7 -12.8 8 8 A V S S- 0 0 53 -3,-0.5 2,-0.4 75,-0.1 -1,-0.3 -0.762 73.0-131.4 -93.3 132.1 -3.4 5.5 -9.8 9 9 A T E -A 82 0A 66 73,-0.9 73,-2.0 -2,-0.4 2,-0.5 -0.678 21.5-165.7 -84.6 129.4 -5.2 5.3 -6.4 10 10 A T E -A 81 0A 82 -2,-0.4 2,-0.3 71,-0.2 71,-0.2 -0.965 5.8-175.2-120.4 125.6 -3.3 6.8 -3.4 11 11 A A E -A 80 0A 1 69,-2.1 69,-2.0 -2,-0.5 2,-0.5 -0.835 15.1-144.1-117.6 155.7 -4.3 6.1 0.2 12 12 A I E -A 79 0A 46 31,-0.9 2,-0.4 -2,-0.3 67,-0.2 -0.962 11.2-157.8-124.4 116.7 -3.0 7.6 3.5 13 13 A I E -A 78 0A 1 65,-2.4 65,-2.6 -2,-0.5 2,-0.8 -0.748 10.2-142.5 -94.5 137.2 -2.7 5.4 6.6 14 14 A H E +A 77 0A 122 -2,-0.4 63,-0.2 63,-0.2 3,-0.2 -0.830 22.4 174.7-102.1 100.2 -2.6 7.0 10.0 15 15 A R E +A 76 0A 20 61,-2.8 61,-2.8 -2,-0.8 62,-0.1 -0.728 9.8 162.4-107.6 82.8 -0.2 5.1 12.3 16 16 A P + 0 0 120 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.751 69.6 40.9 -69.7 -24.9 -0.0 7.1 15.5 17 17 A H - 0 0 106 -3,-0.2 3,-0.3 4,-0.1 59,-0.2 -0.905 63.1-152.4-125.9 154.1 1.5 4.1 17.3 18 18 A A S S+ 0 0 54 -2,-0.3 -1,-0.1 1,-0.2 -3,-0.0 0.777 95.5 61.2 -92.2 -32.4 4.1 1.6 16.4 19 19 A R S S+ 0 0 224 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 0.023 89.4 101.2 -84.0 29.1 2.8 -1.2 18.6 20 20 A E S S- 0 0 99 -3,-0.3 -3,-0.0 1,-0.1 0, 0.0 -0.928 73.8-117.4-118.6 140.8 -0.5 -1.2 16.6 21 21 A Q - 0 0 130 -2,-0.4 -4,-0.1 1,-0.1 -1,-0.1 0.088 13.8-135.3 -61.1-179.1 -1.6 -3.5 13.9 22 22 A L - 0 0 40 2,-0.1 18,-0.9 17,-0.1 17,-0.5 0.733 18.5-145.7-109.9 -39.3 -2.2 -2.4 10.3 23 23 A G S S+ 0 0 21 1,-0.2 12,-1.1 16,-0.1 2,-0.4 -0.257 70.3 91.1 100.5 -46.3 -5.5 -4.1 9.4 24 24 A F E -B 34 0A 16 10,-0.3 2,-0.6 -2,-0.2 10,-0.2 -0.713 67.8-144.2 -88.8 132.2 -4.7 -4.7 5.8 25 25 A C E -B 33 0A 65 8,-2.7 7,-2.6 -2,-0.4 8,-0.6 -0.852 12.8-159.7-100.0 122.1 -3.0 -8.0 4.8 26 26 A V E -B 31 0A 18 -2,-0.6 2,-0.4 5,-0.2 5,-0.3 -0.829 6.3-170.9-103.4 137.9 -0.4 -7.8 2.0 27 27 A E E > S-B 30 0A 112 3,-2.4 3,-0.8 -2,-0.4 -2,-0.0 -0.950 72.8 -22.0-132.3 113.4 0.6 -10.9 0.0 28 28 A D T 3 S- 0 0 139 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.835 129.7 -48.8 59.4 33.2 3.5 -10.8 -2.4 29 29 A G T 3 S+ 0 0 4 1,-0.2 22,-3.0 21,-0.1 2,-0.4 0.675 124.0 103.9 80.8 17.5 3.1 -7.1 -2.7 30 30 A I E < S-BC 27 50A 56 -3,-0.8 -3,-2.4 20,-0.2 20,-0.2 -0.962 70.3-127.4-137.5 118.6 -0.7 -7.4 -3.2 31 31 A I E +B 26 0A 3 18,-1.3 17,-2.3 -2,-0.4 -5,-0.2 -0.334 32.4 165.7 -62.6 139.4 -3.4 -6.7 -0.6 32 32 A C E + 0 0 76 -7,-2.6 2,-0.3 1,-0.4 -1,-0.1 0.696 59.5 25.0-119.0 -59.1 -5.8 -9.6 -0.1 33 33 A S E -B 25 0A 67 -8,-0.6 -8,-2.7 14,-0.1 -1,-0.4 -0.781 62.6-154.1-112.8 157.1 -7.8 -9.0 3.0 34 34 A L E -B 24 0A 37 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.3 -0.996 24.1-114.6-134.8 132.6 -8.7 -5.9 5.0 35 35 A L > - 0 0 80 -12,-1.1 3,-0.8 -2,-0.4 6,-0.4 -0.481 36.1-122.2 -66.5 120.7 -9.5 -5.4 8.7 36 36 A R T 3 S+ 0 0 230 -2,-0.4 -1,-0.1 1,-0.2 3,-0.1 -0.460 92.4 10.0 -66.9 127.4 -13.1 -4.3 9.0 37 37 A G T 3 S+ 0 0 66 -2,-0.2 -1,-0.2 1,-0.1 2,-0.1 0.935 106.5 111.7 70.2 47.5 -13.3 -1.0 10.9 38 38 A G S < S- 0 0 14 -3,-0.8 4,-0.4 1,-0.0 -1,-0.1 -0.222 81.0 -80.7-124.3-146.0 -9.6 -0.2 10.8 39 39 A I S >> S+ 0 0 37 -17,-0.5 4,-2.9 2,-0.1 3,-0.8 0.891 113.1 63.9 -92.6 -52.7 -7.2 2.2 9.3 40 40 A A H 3>>S+ 0 0 0 -18,-0.9 4,-3.3 1,-0.3 5,-2.3 0.883 104.7 48.4 -35.9 -60.7 -6.7 0.8 5.8 41 41 A E H 345S+ 0 0 121 -6,-0.4 -1,-0.3 1,-0.2 -2,-0.1 0.880 113.7 48.8 -50.6 -42.2 -10.3 1.4 4.9 42 42 A R H <45S+ 0 0 221 -3,-0.8 -2,-0.2 -4,-0.4 -1,-0.2 0.949 113.8 44.5 -64.6 -50.9 -10.0 4.9 6.3 43 43 A G H <5S- 0 0 20 -4,-2.9 -31,-0.9 -32,-0.1 -2,-0.2 0.940 125.4 -95.1 -60.0 -49.9 -6.8 5.7 4.4 44 44 A G T <5 + 0 0 28 -4,-3.3 2,-0.4 -5,-0.3 -3,-0.2 0.535 65.0 156.0 137.1 31.0 -8.0 4.2 1.1 45 45 A I < - 0 0 2 -5,-2.3 2,-0.4 -6,-0.2 -1,-0.1 -0.703 14.7-178.2 -87.9 132.2 -6.8 0.6 0.9 46 46 A R > - 0 0 158 -2,-0.4 3,-1.5 -22,-0.0 -15,-0.2 -0.982 26.9-118.6-135.1 123.2 -8.7 -1.8 -1.2 47 47 A V T 3 S+ 0 0 52 -2,-0.4 -15,-0.2 1,-0.2 3,-0.1 -0.084 95.3 43.0 -53.2 155.0 -7.9 -5.5 -1.7 48 48 A G T 3 S+ 0 0 52 -17,-2.3 37,-0.5 1,-0.3 -1,-0.2 -0.047 87.7 109.5 97.0 -32.5 -7.1 -6.7 -5.2 49 49 A H < - 0 0 51 -3,-1.5 -18,-1.3 35,-0.1 -1,-0.3 -0.548 62.9-135.1 -80.1 142.6 -4.8 -3.7 -5.9 50 50 A R E -CD 30 83A 71 33,-3.0 33,-2.6 -2,-0.2 2,-0.4 -0.688 17.0-115.2 -98.3 151.4 -1.1 -4.3 -6.1 51 51 A I E + D 0 82A 4 -22,-3.0 31,-0.2 -2,-0.3 3,-0.1 -0.705 38.6 160.4 -88.0 132.5 1.6 -2.1 -4.5 52 52 A I E + 0 0 13 29,-1.6 7,-1.2 1,-0.4 8,-1.1 0.498 68.7 14.4-123.4 -15.8 4.0 -0.2 -6.8 53 53 A E E -ED 58 81A 59 28,-1.1 28,-2.1 5,-0.3 -1,-0.4 -0.976 57.8-172.6-161.4 147.6 5.3 2.5 -4.5 54 54 A I E > S-ED 57 80A 2 3,-2.0 3,-1.0 -2,-0.3 26,-0.2 -0.997 72.1 -9.9-147.4 140.6 5.3 3.3 -0.8 55 55 A N T 3 S- 0 0 53 24,-3.0 25,-0.1 -2,-0.3 3,-0.1 0.782 133.2 -51.1 43.0 30.0 6.4 6.3 1.3 56 56 A G T 3 S+ 0 0 48 23,-0.4 2,-0.4 1,-0.2 -1,-0.3 0.879 114.0 121.0 77.8 39.5 7.8 7.6 -1.9 57 57 A Q E < -E 54 0A 109 -3,-1.0 -3,-2.0 0, 0.0 2,-0.4 -0.961 64.6-124.4-140.5 119.9 9.8 4.4 -2.8 58 58 A S E +E 53 0A 81 -2,-0.4 -5,-0.3 -5,-0.2 3,-0.1 -0.461 37.9 161.6 -64.5 115.4 9.4 2.3 -5.9 59 59 A V > + 0 0 2 -7,-1.2 3,-1.6 -2,-0.4 -6,-0.2 0.166 38.1 112.6-120.2 14.4 8.6 -1.3 -4.7 60 60 A V T 3 S+ 0 0 45 -8,-1.1 -1,-0.1 1,-0.3 -7,-0.1 0.853 95.2 27.5 -55.3 -36.6 7.2 -2.6 -8.0 61 61 A A T 3 S+ 0 0 93 -9,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.109 101.8 112.8-112.1 18.9 10.2 -4.8 -8.3 62 62 A T S < S- 0 0 38 -3,-1.6 2,-0.2 -33,-0.0 -3,-0.1 -0.761 71.4-112.8 -97.2 138.4 10.9 -5.1 -4.6 63 63 A P >> - 0 0 85 0, 0.0 4,-1.9 0, 0.0 3,-1.2 -0.458 24.4-119.5 -69.8 134.0 10.5 -8.4 -2.7 64 64 A H H 3> S+ 0 0 61 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.870 111.1 66.9 -36.2 -54.1 7.6 -8.5 -0.1 65 65 A A H 3> S+ 0 0 64 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.871 108.6 36.7 -34.6 -58.8 10.2 -9.1 2.6 66 66 A R H <> S+ 0 0 125 -3,-1.2 4,-2.3 1,-0.2 3,-0.4 0.949 109.4 62.4 -63.1 -51.0 11.7 -5.7 2.1 67 67 A I H X S+ 0 0 4 -4,-1.9 4,-2.4 1,-0.3 5,-0.2 0.849 104.4 50.8 -42.5 -41.6 8.3 -4.0 1.4 68 68 A I H X S+ 0 0 65 -4,-2.6 4,-2.3 -5,-0.2 -1,-0.3 0.927 107.2 51.3 -64.7 -46.6 7.4 -5.1 5.0 69 69 A E H X S+ 0 0 114 -4,-1.4 4,-1.7 -3,-0.4 -2,-0.2 0.852 114.1 46.7 -59.3 -35.6 10.5 -3.6 6.5 70 70 A L H X S+ 0 0 28 -4,-2.3 4,-1.8 2,-0.2 3,-0.4 0.995 110.8 46.5 -70.0 -67.0 9.8 -0.3 4.7 71 71 A L H < S+ 0 0 9 -4,-2.4 3,-0.2 1,-0.3 -2,-0.2 0.866 114.0 52.5 -42.7 -44.4 6.1 0.1 5.5 72 72 A T H < S+ 0 0 57 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.933 104.9 53.1 -59.8 -48.5 6.9 -0.7 9.1 73 73 A E H < S+ 0 0 126 -4,-1.7 2,-0.7 -3,-0.4 -1,-0.2 0.804 96.3 82.2 -57.7 -29.5 9.6 1.9 9.3 74 74 A A < + 0 0 16 -4,-1.8 2,-0.2 -3,-0.2 4,-0.1 -0.703 64.9 174.3 -83.4 113.3 7.1 4.4 8.1 75 75 A Y + 0 0 113 -2,-0.7 2,-0.6 2,-0.1 -57,-0.1 -0.698 47.4 5.4-114.9 168.2 4.9 5.7 11.0 76 76 A G E S+A 15 0A 26 -61,-2.8 -61,-2.8 -2,-0.2 2,-1.2 -0.482 125.8 32.9 65.9-111.4 2.2 8.3 11.3 77 77 A E E S-A 14 0A 126 -2,-0.6 2,-0.5 -63,-0.2 -63,-0.2 -0.664 78.1-179.5 -82.7 96.5 1.5 9.6 7.9 78 78 A V E -A 13 0A 2 -65,-2.6 -65,-2.4 -2,-1.2 2,-0.8 -0.867 15.5-154.8-102.5 124.5 2.1 6.6 5.6 79 79 A H E -A 12 0A 75 -2,-0.5 -24,-3.0 -67,-0.2 2,-0.6 -0.855 13.4-176.9-101.7 107.8 1.6 7.1 1.8 80 80 A I E -AD 11 54A 2 -69,-2.0 -69,-2.1 -2,-0.8 2,-0.8 -0.908 13.4-153.7-109.0 114.0 0.8 3.8 0.1 81 81 A K E -AD 10 53A 71 -28,-2.1 -29,-1.6 -2,-0.6 -28,-1.1 -0.758 17.2-170.0 -89.1 108.2 0.4 4.0 -3.7 82 82 A T E +AD 9 51A 2 -73,-2.0 -73,-0.9 -2,-0.8 -31,-0.2 -0.706 8.0 175.1 -99.0 150.0 -1.9 1.2 -4.9 83 83 A M E - D 0 50A 16 -33,-2.6 -33,-3.0 -2,-0.3 2,-0.5 -0.978 36.1-106.5-155.9 139.6 -2.5 0.2 -8.5 84 84 A P > - 0 0 29 0, 0.0 4,-2.3 0, 0.0 5,-0.3 -0.530 23.4-140.9 -69.8 115.0 -4.5 -2.6 -10.3 85 85 A A H > S+ 0 0 34 -2,-0.5 4,-2.7 -37,-0.5 5,-0.3 0.845 101.3 59.0 -41.8 -41.5 -2.1 -5.2 -11.6 86 86 A A H > S+ 0 0 67 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.976 111.5 35.7 -53.7 -64.8 -4.3 -5.4 -14.7 87 87 A T H > S+ 0 0 63 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.964 117.7 52.2 -54.5 -58.8 -3.9 -1.7 -15.6 88 88 A Y H X S+ 0 0 57 -4,-2.3 4,-2.8 1,-0.2 3,-0.2 0.926 113.2 43.9 -42.7 -61.4 -0.3 -1.4 -14.6 89 89 A R H < S+ 0 0 147 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.944 113.5 50.4 -50.9 -55.6 0.7 -4.5 -16.6 90 90 A L H >X S+ 0 0 143 -4,-2.7 3,-0.8 -5,-0.3 4,-0.7 0.858 111.8 50.4 -52.4 -37.8 -1.3 -3.4 -19.6 91 91 A L H 3< S+ 0 0 95 -4,-3.0 3,-0.4 1,-0.2 -1,-0.2 0.949 117.6 36.5 -66.7 -50.7 0.4 0.1 -19.3 92 92 A T T 3< S+ 0 0 87 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.076 100.2 87.2 -90.3 24.1 3.9 -1.3 -19.1 93 93 A G T <4 0 0 57 -3,-0.8 -1,-0.2 1,-0.2 -2,-0.2 0.876 360.0 360.0 -88.7 -43.3 3.0 -4.0 -21.6 94 94 A Q < 0 0 225 -4,-0.7 -1,-0.2 -3,-0.4 -2,-0.1 0.521 360.0 360.0 -53.3 360.0 3.7 -2.2 -24.9