==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 05-APR-07 2YTV . COMPND 2 MOLECULE: COLD SHOCK DOMAIN-CONTAINING PROTEIN E1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.K.GORONCY,N.TOCHIO,T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARAD . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6167.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 25.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 126 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-111.2 2.1 0.0 -1.2 2 2 A S + 0 0 135 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.893 360.0 136.6-108.6 108.5 3.5 3.3 -2.5 3 3 A S - 0 0 104 -2,-0.7 2,-0.7 2,-0.0 0, 0.0 -0.965 50.7-122.2-153.4 132.7 2.8 6.3 -0.3 4 4 A G - 0 0 85 -2,-0.3 2,-0.9 1,-0.1 -2,-0.0 -0.652 22.3-163.9 -79.8 115.3 4.8 9.2 1.0 5 5 A S + 0 0 107 -2,-0.7 2,-0.3 2,-0.0 -1,-0.1 -0.775 24.7 157.2-102.4 90.6 4.8 9.3 4.8 6 6 A S + 0 0 113 -2,-0.9 2,-0.2 49,-0.0 51,-0.1 -0.878 21.3 73.9-115.7 146.9 6.0 12.7 5.8 7 7 A G S S- 0 0 38 -2,-0.3 49,-1.1 49,-0.3 2,-0.1 -0.737 78.9 -45.3 140.3 171.3 5.4 14.6 9.1 8 8 A L B -A 55 0A 101 -2,-0.2 2,-0.2 47,-0.2 47,-0.2 -0.421 54.3-168.6 -72.2 145.6 6.4 14.8 12.7 9 9 A R - 0 0 106 45,-2.2 45,-0.5 -2,-0.1 2,-0.4 -0.702 15.3-133.7-126.6 178.7 6.5 11.6 14.7 10 10 A R + 0 0 153 -2,-0.2 2,-0.3 43,-0.2 43,-0.2 -0.955 34.3 143.9-142.6 120.0 6.8 10.5 18.4 11 11 A A E -B 52 0B 7 41,-1.2 41,-1.9 -2,-0.4 2,-0.3 -0.991 39.4-117.6-152.6 155.4 9.1 7.8 19.8 12 12 A T E -B 51 0B 51 12,-0.3 12,-2.2 -2,-0.3 2,-0.2 -0.674 30.1-116.1 -96.6 150.8 11.2 7.0 22.9 13 13 A V E -D 23 0C 3 37,-0.8 36,-2.6 34,-0.4 10,-0.2 -0.577 12.7-152.5 -85.5 147.2 15.0 6.6 22.9 14 14 A E E S- 0 0 93 8,-1.7 2,-0.3 1,-0.3 -1,-0.1 0.971 71.6 -17.5 -80.2 -66.8 16.6 3.3 23.9 15 15 A C E -D 22 0C 84 7,-0.6 7,-0.8 33,-0.1 2,-0.5 -0.980 52.7-166.5-148.6 132.0 20.0 4.3 25.3 16 16 A V + 0 0 49 -2,-0.3 32,-0.2 5,-0.1 5,-0.1 -0.900 40.0 122.1-123.7 102.8 22.0 7.5 25.1 17 17 A K + 0 0 189 -2,-0.5 -1,-0.1 3,-0.4 2,-0.1 0.651 65.7 50.2-123.3 -45.2 25.6 7.3 26.2 18 18 A D S S- 0 0 102 2,-0.5 -1,-0.1 1,-0.1 0, 0.0 -0.417 99.7 -91.8 -93.8 172.1 27.8 8.3 23.2 19 19 A Q S S+ 0 0 126 -2,-0.1 18,-0.8 -3,-0.1 2,-0.4 0.801 116.6 55.1 -52.1 -30.1 27.5 11.4 21.0 20 20 A F E S- E 0 36C 95 16,-0.2 -2,-0.5 17,-0.1 -3,-0.4 -0.893 71.9-179.8-110.8 136.8 25.3 9.3 18.8 21 21 A G E - E 0 35C 1 14,-1.4 14,-1.3 -2,-0.4 2,-0.4 -0.800 22.4-122.9-129.2 171.5 22.2 7.4 19.9 22 22 A F E -DE 15 34C 95 -7,-0.8 -8,-1.7 -2,-0.3 -7,-0.6 -0.956 18.0-147.8-120.4 135.1 19.4 5.2 18.6 23 23 A I E -DE 13 33C 0 10,-1.0 2,-2.5 -2,-0.4 10,-1.8 -0.778 24.7-117.5-101.8 144.4 15.7 5.8 18.7 24 24 A N S S+ 0 0 70 -12,-2.2 2,-0.4 -2,-0.3 -12,-0.3 -0.408 77.0 113.0 -77.0 66.8 13.0 3.1 19.0 25 25 A Y - 0 0 49 -2,-2.5 2,-0.5 -14,-0.1 -2,-0.2 -0.959 54.7-149.5-144.7 122.6 11.5 3.9 15.6 26 26 A E + 0 0 121 -2,-0.4 5,-0.2 1,-0.2 6,-0.1 -0.805 29.1 154.1 -95.1 124.3 11.4 1.8 12.5 27 27 A V - 0 0 57 3,-0.8 -1,-0.2 -2,-0.5 2,-0.1 0.620 69.8 -29.0-117.4 -27.8 11.4 3.7 9.2 28 28 A G S S- 0 0 40 2,-1.0 0, 0.0 4,-0.1 0, 0.0 -0.449 114.3 -15.2-154.3-131.3 12.9 1.1 6.8 29 29 A D S S+ 0 0 174 -2,-0.1 2,-0.2 -3,-0.1 -3,-0.0 0.830 119.5 71.9 -59.1 -32.8 15.4 -1.7 6.8 30 30 A S S S- 0 0 77 1,-0.1 -2,-1.0 2,-0.1 -3,-0.8 -0.596 70.4-151.5 -87.2 147.1 16.6 -0.5 10.2 31 31 A K S S+ 0 0 135 -2,-0.2 2,-0.2 -5,-0.2 -1,-0.1 0.824 81.3 42.1 -84.3 -35.0 14.4 -0.9 13.4 32 32 A K S S- 0 0 69 -8,-0.2 -5,-0.2 -6,-0.1 -8,-0.2 -0.627 83.2-116.7-108.8 169.1 15.9 2.1 15.2 33 33 A L E -E 23 0C 6 -10,-1.8 -10,-1.0 -2,-0.2 2,-0.5 -0.598 17.2-132.3-102.6 165.5 16.8 5.6 14.0 34 34 A F E +E 22 0C 105 31,-0.2 33,-1.0 -2,-0.2 2,-0.3 -0.974 31.3 160.6-123.8 123.2 20.1 7.4 13.8 35 35 A F E -E 21 0C 8 -14,-1.3 -14,-1.4 -2,-0.5 2,-0.3 -0.984 24.2-141.5-140.7 150.4 20.7 10.9 15.2 36 36 A H E >> -E 20 0C 66 -2,-0.3 3,-2.1 -16,-0.2 4,-0.8 -0.736 32.1-109.0-110.2 159.7 23.7 13.0 16.2 37 37 A V T 34 S+ 0 0 57 -18,-0.8 -17,-0.1 1,-0.3 -1,-0.1 0.772 117.0 68.2 -55.3 -26.0 24.1 15.5 19.0 38 38 A K T 34 S+ 0 0 166 1,-0.2 -1,-0.3 -19,-0.1 -19,-0.0 0.809 93.0 60.1 -64.2 -29.9 24.1 18.2 16.3 39 39 A E T <4 S+ 0 0 28 -3,-2.1 -2,-0.2 30,-0.1 30,-0.2 0.994 90.0 73.1 -61.3 -66.3 20.5 17.4 15.6 40 40 A V < + 0 0 24 -4,-0.8 2,-0.2 29,-0.2 3,-0.1 -0.179 67.5 178.2 -51.9 140.0 19.0 18.3 19.0 41 41 A Q + 0 0 108 29,-1.0 3,-0.1 1,-0.1 -1,-0.1 -0.714 48.0 61.2-134.4-175.3 18.9 22.0 19.8 42 42 A D S S- 0 0 98 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.0 0.779 121.0 -72.3 63.2 26.4 17.8 24.5 22.4 43 43 A G S S+ 0 0 81 1,-0.2 2,-0.4 -3,-0.1 -1,-0.2 0.975 87.3 155.9 52.3 68.2 20.3 22.8 24.8 44 44 A I - 0 0 67 -3,-0.1 2,-0.5 2,-0.0 -1,-0.2 -0.955 33.3-148.4-127.7 145.9 18.4 19.6 25.4 45 45 A E - 0 0 138 -2,-0.4 2,-0.6 27,-0.0 -4,-0.0 -0.952 7.9-151.0-117.1 128.3 19.6 16.1 26.4 46 46 A L + 0 0 7 -2,-0.5 2,-0.2 -31,-0.0 3,-0.0 -0.860 22.1 174.4-100.9 121.8 17.9 12.9 25.3 47 47 A Q > - 0 0 104 -2,-0.6 3,-1.7 1,-0.1 -34,-0.4 -0.537 45.0 -58.7-114.7-178.0 18.1 9.9 27.6 48 48 A A T 3 S+ 0 0 63 1,-0.3 -34,-0.2 -32,-0.2 -33,-0.1 -0.473 125.5 17.2 -66.1 121.4 16.6 6.4 27.7 49 49 A G T 3 S+ 0 0 46 -36,-2.6 2,-0.7 -2,-0.3 -1,-0.3 0.631 88.9 140.2 91.5 15.7 12.9 6.6 27.7 50 50 A D < - 0 0 26 -3,-1.7 -37,-0.8 -37,-0.2 2,-0.6 -0.839 44.6-145.4 -97.9 112.4 12.8 10.2 26.5 51 51 A E E +B 12 0B 80 -2,-0.7 23,-2.9 -39,-0.2 22,-1.0 -0.657 25.0 178.0 -79.8 117.5 10.0 10.8 23.9 52 52 A V E -BC 11 72B 0 -41,-1.9 -41,-1.2 -2,-0.6 2,-0.6 -0.925 26.9-129.3-122.8 147.2 11.1 13.4 21.3 53 53 A E E + C 0 71B 63 18,-2.7 18,-1.6 -2,-0.3 2,-0.3 -0.846 36.0 166.7 -98.9 117.4 9.4 14.7 18.2 54 54 A F - 0 0 0 -2,-0.6 -45,-2.2 -45,-0.5 2,-0.5 -0.858 32.9-118.8-126.9 162.0 11.4 14.6 15.0 55 55 A S B -A 8 0A 21 13,-1.3 2,-0.7 -2,-0.3 13,-0.2 -0.880 23.9-127.6-105.7 129.4 10.7 15.0 11.3 56 56 A V - 0 0 25 -49,-1.1 2,-0.5 -2,-0.5 -49,-0.3 -0.635 31.5-177.1 -77.3 112.6 11.4 12.1 8.9 57 57 A I E -F 66 0D 82 9,-1.3 9,-1.0 -2,-0.7 2,-0.4 -0.952 13.1-151.8-116.8 125.5 13.5 13.4 6.1 58 58 A L E -F 65 0D 110 -2,-0.5 2,-0.5 7,-0.2 7,-0.2 -0.805 11.2-139.5 -97.7 132.4 14.5 11.3 3.1 59 59 A N - 0 0 76 5,-2.5 4,-0.4 -2,-0.4 5,-0.1 -0.785 14.2-172.3 -93.7 127.2 17.8 12.0 1.2 60 60 A Q S S+ 0 0 190 -2,-0.5 -1,-0.1 2,-0.1 -2,-0.0 0.742 85.2 56.5 -86.4 -26.4 17.7 11.7 -2.5 61 61 A R S S+ 0 0 217 3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.946 128.5 12.6 -70.0 -50.2 21.5 12.1 -2.9 62 62 A T S S- 0 0 78 2,-0.1 -2,-0.1 0, 0.0 -1,-0.1 0.895 95.2-128.7 -92.5 -53.3 22.4 9.2 -0.6 63 63 A G + 0 0 50 -4,-0.4 2,-0.2 1,-0.3 -3,-0.1 0.689 64.2 113.9 107.7 27.4 19.1 7.4 -0.2 64 64 A K - 0 0 155 -5,-0.1 -5,-2.5 -7,-0.0 -1,-0.3 -0.694 54.7-127.1-121.5 175.0 18.9 7.0 3.6 65 65 A C E +F 58 0D 55 -2,-0.2 2,-0.3 -7,-0.2 -31,-0.2 -0.904 29.9 154.5-125.5 153.7 16.7 8.4 6.4 66 66 A S E -F 57 0D 45 -9,-1.0 -9,-1.3 -2,-0.3 2,-0.2 -0.926 38.9 -84.2-160.2-178.8 17.4 10.3 9.6 67 67 A A - 0 0 0 -33,-1.0 2,-0.3 -2,-0.3 -31,-0.2 -0.615 34.0-170.0 -98.6 159.7 16.1 12.7 12.2 68 68 A C + 0 0 45 -13,-0.2 -13,-1.3 -2,-0.2 3,-0.2 -0.991 62.7 7.1-151.6 140.7 16.1 16.5 12.2 69 69 A N S S- 0 0 93 -2,-0.3 2,-0.4 1,-0.2 -29,-0.2 0.944 76.7-156.6 54.0 53.2 15.3 19.2 14.6 70 70 A V - 0 0 0 -16,-0.1 -29,-1.0 -3,-0.1 2,-0.5 -0.466 13.4-174.3 -65.0 118.1 15.0 16.8 17.5 71 71 A W E -C 53 0B 142 -18,-1.6 -18,-2.7 -2,-0.4 2,-0.8 -0.970 27.1-125.0-121.7 123.8 12.8 18.4 20.2 72 72 A R E +C 52 0B 98 -2,-0.5 -20,-0.2 -20,-0.2 -21,-0.1 -0.515 37.1 165.2 -67.9 105.0 12.2 16.8 23.6 73 73 A V + 0 0 76 -22,-1.0 -21,-0.2 -2,-0.8 -1,-0.2 0.749 44.1 99.5 -91.4 -28.8 8.4 16.7 23.9 74 74 A S S S- 0 0 30 -23,-2.9 -24,-0.1 -3,-0.1 -21,-0.1 0.008 78.7-102.5 -53.0 164.8 8.3 14.2 26.8 75 75 A G - 0 0 36 1,-0.1 -1,-0.1 2,-0.0 -24,-0.1 -0.143 29.9 -99.4 -83.7-177.2 7.7 15.6 30.3 76 76 A P - 0 0 100 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.911 36.0-163.2 -69.7 -44.6 10.2 16.2 33.1 77 77 A S + 0 0 112 1,-0.2 2,-0.5 0, 0.0 -3,-0.0 0.836 41.8 135.7 61.5 33.2 9.4 13.0 35.0 78 78 A S 0 0 102 1,-0.0 -1,-0.2 0, 0.0 0, 0.0 -0.954 360.0 360.0-118.6 118.4 11.1 14.4 38.1 79 79 A G 0 0 133 -2,-0.5 -1,-0.0 -3,-0.1 0, 0.0 -0.641 360.0 360.0 165.5 360.0 9.5 14.1 41.5