==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 05-APR-07 2YTX . COMPND 2 MOLECULE: COLD SHOCK DOMAIN-CONTAINING PROTEIN E1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.K.GORONCY,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8976.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 37.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 19.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 102.3 13.9 0.1 -1.0 2 2 A S + 0 0 125 2,-0.0 2,-0.3 0, 0.0 0, 0.0 0.743 360.0 83.9 -96.1 -30.1 16.7 2.5 0.1 3 3 A S + 0 0 125 3,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.590 66.6 76.8 -78.6 132.4 14.6 4.6 2.4 4 4 A G S S- 0 0 69 -2,-0.3 2,-0.8 2,-0.0 -2,-0.0 -0.953 84.3 -8.3 168.7-148.4 14.2 3.3 5.9 5 5 A S + 0 0 130 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.720 66.8 164.1 -85.2 110.7 16.0 2.9 9.3 6 6 A S + 0 0 123 -2,-0.8 2,-0.3 0, 0.0 -3,-0.0 -0.939 8.7 113.3-128.3 149.9 19.6 4.0 8.8 7 7 A G + 0 0 49 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.885 17.1 108.5-176.5-152.2 22.4 4.9 11.3 8 8 A N + 0 0 168 -2,-0.3 2,-0.3 1,-0.2 -1,-0.2 0.964 60.7 112.2 52.7 87.8 25.8 3.9 12.7 9 9 A I S S- 0 0 141 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.962 71.1 -53.4-175.5 162.0 28.2 6.4 11.3 10 10 A M - 0 0 166 -2,-0.3 2,-0.4 1,-0.1 0, 0.0 0.013 50.5-158.8 -42.5 150.0 30.5 9.4 12.1 11 11 A L - 0 0 154 -3,-0.0 2,-0.4 2,-0.0 -1,-0.1 -0.959 8.5-142.5-143.5 121.7 28.8 12.2 14.0 12 12 A L + 0 0 143 -2,-0.4 2,-0.1 1,-0.1 -2,-0.0 -0.671 16.2 179.9 -85.3 132.9 29.9 15.8 14.2 13 13 A K + 0 0 179 -2,-0.4 -1,-0.1 2,-0.0 2,-0.0 -0.473 12.2 175.7-130.6 61.9 29.4 17.6 17.5 14 14 A K - 0 0 176 1,-0.1 2,-0.0 -2,-0.1 -2,-0.0 -0.342 34.4-106.0 -67.7 148.0 30.8 21.1 17.1 15 15 A K - 0 0 147 1,-0.1 -1,-0.1 -2,-0.0 3,-0.1 -0.321 24.8-161.5 -72.6 157.4 30.4 23.6 19.9 16 16 A Q - 0 0 184 1,-0.3 2,-0.3 -2,-0.0 -1,-0.1 0.828 48.4 -58.9-102.1 -74.2 27.8 26.4 19.8 17 17 A A - 0 0 87 2,-0.0 -1,-0.3 0, 0.0 2,-0.3 -0.971 42.8-168.3-165.9 173.8 28.6 29.1 22.3 18 18 A R - 0 0 116 -2,-0.3 2,-0.4 -3,-0.1 47,-0.1 -0.976 16.6-129.3-164.4 169.6 29.2 30.0 26.0 19 19 A C E +A 64 0A 27 45,-1.4 45,-2.3 -2,-0.3 2,-0.3 -0.988 27.3 167.5-136.5 125.9 29.6 32.8 28.5 20 20 A Q E +A 63 0A 59 -2,-0.4 43,-0.2 43,-0.2 2,-0.2 -0.853 2.3 153.5-131.6 166.9 32.3 33.3 31.1 21 21 A G E -A 62 0A 8 41,-2.3 41,-1.2 -2,-0.3 2,-0.4 -0.708 41.1 -72.2-160.4-148.1 33.6 36.0 33.4 22 22 A V E -AB 61 34A 65 12,-1.9 12,-3.0 39,-0.2 2,-0.9 -0.992 36.1-118.4-137.6 129.2 35.4 36.7 36.7 23 23 A V E + B 0 33A 6 37,-0.7 10,-0.2 -2,-0.4 3,-0.0 -0.503 42.9 159.8 -67.1 103.4 34.2 36.2 40.2 24 24 A C + 0 0 92 8,-1.3 2,-0.4 -2,-0.9 -1,-0.2 0.829 57.6 62.4 -92.8 -40.0 34.3 39.7 41.7 25 25 A A - 0 0 31 7,-1.3 2,-0.5 34,-0.0 7,-0.3 -0.732 63.9-168.5 -92.1 136.0 31.9 39.1 44.6 26 26 A M + 0 0 81 -2,-0.4 2,-0.2 5,-0.1 5,-0.1 -0.930 21.5 147.2-128.9 108.5 32.8 36.7 47.4 27 27 A K - 0 0 134 -2,-0.5 4,-0.0 3,-0.3 -2,-0.0 -0.785 55.3-112.3-131.3 174.8 30.2 35.6 49.9 28 28 A E S S+ 0 0 198 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.133 113.3 21.0-100.8 36.2 29.2 32.6 52.0 29 29 A A S S- 0 0 40 1,-0.4 17,-1.2 17,-0.0 18,-0.4 0.254 127.3 -2.9-163.0 -45.8 25.9 32.1 50.1 30 30 A F E - C 0 45A 77 15,-0.2 -1,-0.4 16,-0.1 -3,-0.3 -0.962 54.7-172.5-154.7 168.1 26.0 33.7 46.7 31 31 A G E - C 0 44A 0 13,-1.9 13,-1.5 -2,-0.3 2,-0.3 -0.885 18.6-115.2-153.0-176.8 28.2 35.9 44.4 32 32 A F E - C 0 43A 77 -7,-0.3 -8,-1.3 -2,-0.3 -7,-1.3 -0.932 16.1-138.7-131.0 154.3 28.4 37.8 41.2 33 33 A I E -BC 23 42A 1 9,-1.0 9,-0.5 -2,-0.3 2,-0.3 -0.936 12.8-146.7-116.7 135.5 30.4 37.5 38.0 34 34 A E E -B 22 0A 75 -12,-3.0 -12,-1.9 -2,-0.4 2,-0.3 -0.760 11.1-142.1-100.7 145.3 32.0 40.4 36.0 35 35 A R - 0 0 73 -2,-0.3 -14,-0.1 -14,-0.2 6,-0.0 -0.716 5.8-158.8-104.6 155.8 32.4 40.5 32.3 36 36 A G S S+ 0 0 72 -2,-0.3 -1,-0.2 4,-0.0 -15,-0.1 0.896 88.9 26.4 -94.6 -73.7 35.3 41.9 30.2 37 37 A D S S+ 0 0 170 2,-0.0 2,-0.2 0, 0.0 -2,-0.0 0.894 130.5 39.5 -58.5 -41.9 34.2 42.8 26.7 38 38 A V S S- 0 0 53 2,-0.1 -3,-0.1 -4,-0.0 0, 0.0 -0.585 74.7-135.2-105.5 169.5 30.7 43.3 27.8 39 39 A V + 0 0 144 -2,-0.2 2,-0.5 -5,-0.1 -2,-0.0 -0.249 61.4 122.0-118.0 43.5 29.2 44.9 31.0 40 40 A K - 0 0 107 2,-0.0 2,-0.3 0, 0.0 -2,-0.1 -0.927 36.4-176.2-111.9 127.2 26.6 42.3 31.8 41 41 A E - 0 0 115 -2,-0.5 2,-0.3 -7,-0.1 -7,-0.1 -0.747 4.1-163.6-117.2 165.5 26.5 40.5 35.2 42 42 A I E -C 33 0A 9 -9,-0.5 -9,-1.0 -2,-0.3 2,-0.6 -0.928 23.4-110.5-143.6 166.7 24.4 37.8 36.7 43 43 A F E -Cd 32 74A 68 30,-0.7 32,-1.1 -2,-0.3 2,-0.4 -0.899 34.1-178.9-106.5 118.2 23.5 36.2 40.0 44 44 A F E -C 31 0A 4 -13,-1.5 -13,-1.9 -2,-0.6 2,-0.4 -0.934 18.6-138.6-118.8 139.5 24.8 32.7 40.7 45 45 A H E >> -C 30 0A 76 30,-0.5 3,-2.0 -2,-0.4 4,-1.4 -0.802 13.7-135.6 -98.6 134.9 24.3 30.6 43.8 46 46 A Y T 34 S+ 0 0 14 -17,-1.2 -1,-0.1 -2,-0.4 -16,-0.1 0.813 103.2 71.8 -54.5 -31.1 27.1 28.5 45.3 47 47 A S T 34 S+ 0 0 96 -18,-0.4 -1,-0.3 1,-0.2 -17,-0.1 0.834 106.0 36.8 -54.6 -33.8 24.6 25.7 45.6 48 48 A E T <4 S+ 0 0 78 -3,-2.0 -1,-0.2 27,-0.1 -2,-0.2 0.739 91.3 111.0 -89.8 -27.2 24.7 25.3 41.8 49 49 A F < - 0 0 14 -4,-1.4 2,-0.8 28,-0.2 30,-0.2 -0.275 55.5-157.6 -52.5 121.3 28.4 26.1 41.6 50 50 A K + 0 0 151 28,-3.2 30,-0.5 2,-0.1 2,-0.2 -0.693 57.4 64.3-106.4 79.1 30.2 22.9 40.5 51 51 A G S S- 0 0 40 -2,-0.8 2,-0.7 28,-0.1 3,-0.1 -0.618 97.1 -38.8-158.5-141.3 33.8 23.3 41.7 52 52 A D > + 0 0 87 3,-0.2 3,-0.6 -2,-0.2 -2,-0.1 -0.826 40.3 177.1-110.6 93.5 35.9 23.7 44.8 53 53 A L T 3 S+ 0 0 103 -2,-0.7 3,-0.3 1,-0.2 -1,-0.1 0.663 82.0 63.3 -66.9 -15.1 34.1 26.0 47.3 54 54 A E T 3 S+ 0 0 173 1,-0.3 2,-0.4 -3,-0.1 -1,-0.2 0.859 113.1 29.9 -76.9 -37.5 37.1 25.3 49.6 55 55 A T S < S+ 0 0 87 -3,-0.6 2,-0.3 1,-0.0 -1,-0.3 -0.785 78.1 128.8-127.6 88.5 39.6 27.0 47.3 56 56 A L + 0 0 7 -2,-0.4 -3,-0.0 -3,-0.3 -5,-0.0 -0.740 39.7 176.4-144.1 91.5 38.0 29.8 45.2 57 57 A Q - 0 0 144 -2,-0.3 2,-0.2 2,-0.0 -31,-0.0 -0.943 44.0 -17.9-179.2 159.5 39.7 33.2 45.2 58 58 A P S S- 0 0 120 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.784 120.3 -49.8 -69.8 -42.6 40.3 35.9 44.6 59 59 A G - 0 0 12 -2,-0.2 -36,-0.3 -33,-0.0 3,-0.1 -0.306 60.1-166.2-153.0 61.5 38.2 35.5 41.5 60 60 A D - 0 0 68 -38,-0.1 -37,-0.7 1,-0.1 -39,-0.1 -0.213 39.9 -93.6 -52.1 135.1 39.1 32.4 39.5 61 61 A D E -A 22 0A 67 -39,-0.2 20,-3.1 21,-0.1 2,-0.3 -0.188 51.1-172.0 -52.3 139.6 37.6 32.6 36.0 62 62 A V E -AE 21 80A 2 -41,-1.2 -41,-2.3 18,-0.3 2,-0.3 -0.933 13.4-140.0-136.2 159.2 34.2 30.8 35.8 63 63 A E E +AE 20 79A 16 16,-2.7 16,-1.3 -2,-0.3 2,-0.3 -0.749 22.2 163.6-116.9 164.8 31.7 29.8 33.1 64 64 A F E -A 19 0A 3 -45,-2.3 -45,-1.4 -2,-0.3 2,-0.5 -0.980 31.0-123.0-169.1 167.5 27.9 29.8 32.9 65 65 A T E - E 0 76A 67 11,-0.8 11,-0.8 -2,-0.3 2,-0.2 -0.944 23.6-135.9-129.7 111.6 25.0 29.6 30.5 66 66 A I E - E 0 75A 51 -2,-0.5 2,-0.2 9,-0.1 9,-0.1 -0.450 29.2-173.3 -66.5 128.4 22.3 32.3 30.4 67 67 A K - 0 0 116 7,-0.8 2,-0.5 -2,-0.2 7,-0.1 -0.470 39.3 -93.4-112.3-174.9 18.8 30.9 30.3 68 68 A D + 0 0 165 -2,-0.2 2,-0.2 5,-0.1 5,-0.1 -0.329 56.0 170.9 -97.3 50.3 15.3 32.3 29.9 69 69 A R - 0 0 144 -2,-0.5 2,-0.3 5,-0.2 -3,-0.0 -0.428 37.6-116.1 -65.0 128.9 14.7 32.7 33.6 70 70 A N S S+ 0 0 144 -2,-0.2 2,-0.8 1,-0.2 -1,-0.1 -0.503 91.1 7.0 -69.6 126.0 11.5 34.6 34.3 71 71 A G S S+ 0 0 70 -2,-0.3 2,-0.3 -3,-0.0 -1,-0.2 -0.683 128.4 18.1 107.7 -79.5 12.2 37.9 36.1 72 72 A K S S- 0 0 160 -2,-0.8 2,-0.8 -29,-0.0 -3,-0.0 -0.886 77.6-108.7-128.1 159.3 16.0 38.2 36.2 73 73 A E + 0 0 124 -2,-0.3 -30,-0.7 -32,-0.1 2,-0.2 -0.786 45.2 171.2 -91.9 111.5 18.9 36.7 34.3 74 74 A V B -d 43 0A 36 -2,-0.8 -7,-0.8 -32,-0.2 2,-0.6 -0.717 33.6-111.7-115.7 167.2 20.8 34.2 36.5 75 75 A A E -E 66 0A 5 -32,-1.1 -30,-0.5 -2,-0.2 2,-0.4 -0.884 29.8-164.7-104.3 122.0 23.6 31.7 35.9 76 76 A T E +E 65 0A 48 -11,-0.8 -11,-0.8 -2,-0.6 -32,-0.0 -0.829 65.4 11.4-107.0 143.8 22.8 28.0 36.2 77 77 A D E S- 0 0 102 -2,-0.4 2,-0.3 1,-0.2 -1,-0.2 0.991 79.4-157.4 56.9 69.9 25.3 25.2 36.5 78 78 A V E - 0 0 0 -3,-0.2 -28,-3.2 -33,-0.2 2,-0.4 -0.624 10.5-170.9 -82.0 134.1 28.4 27.2 37.1 79 79 A R E -E 63 0A 153 -16,-1.3 -16,-2.7 -2,-0.3 -28,-0.1 -0.989 23.5-117.4-130.6 126.9 31.7 25.6 36.2 80 80 A L E -E 62 0A 47 -30,-0.5 -18,-0.3 -2,-0.4 -19,-0.1 -0.112 32.5-120.4 -55.6 155.5 35.2 26.9 37.0 81 81 A L - 0 0 26 -20,-3.1 -1,-0.1 1,-0.1 3,-0.1 -0.634 26.9 -97.6-100.4 159.2 37.5 27.8 34.1 82 82 A P - 0 0 100 0, 0.0 -21,-0.1 0, 0.0 -1,-0.1 -0.209 53.8 -75.4 -69.7 162.9 41.0 26.3 33.3 83 83 A Q - 0 0 157 2,-0.1 3,-0.1 -23,-0.1 -23,-0.0 -0.040 46.5-116.2 -54.0 161.3 44.2 28.0 34.2 84 84 A G S S+ 0 0 61 1,-0.2 2,-0.4 -3,-0.1 -1,-0.0 0.892 93.0 32.9 -66.2-103.1 45.4 31.0 32.2 85 85 A T S S- 0 0 131 1,-0.1 -1,-0.2 0, 0.0 2,-0.1 -0.413 87.4-133.4 -60.9 114.7 48.6 30.5 30.3 86 86 A V - 0 0 137 -2,-0.4 2,-0.4 -3,-0.1 -1,-0.1 -0.382 15.0-140.0 -70.6 147.8 48.7 26.8 29.3 87 87 A I - 0 0 112 1,-0.1 -1,-0.0 -2,-0.1 0, 0.0 -0.901 19.6-107.9-113.9 140.1 51.8 24.9 29.8 88 88 A F + 0 0 186 -2,-0.4 2,-0.3 2,-0.0 -1,-0.1 -0.017 45.1 164.2 -55.7 165.6 53.3 22.3 27.5 89 89 A E - 0 0 141 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.976 48.3-100.7-171.6 174.1 53.2 18.6 28.4 90 90 A D S S+ 0 0 166 -2,-0.3 2,-0.2 1,-0.1 -2,-0.0 -0.381 82.1 106.3-106.5 52.6 53.5 15.0 27.1 91 91 A I + 0 0 128 -2,-0.3 2,-0.5 2,-0.1 -1,-0.1 -0.563 44.0 178.1-130.6 69.0 49.8 14.2 26.8 92 92 A S + 0 0 131 -2,-0.2 -2,-0.0 2,-0.1 3,-0.0 -0.610 33.5 99.6 -76.3 119.7 49.0 14.2 23.1 93 93 A G S S- 0 0 58 -2,-0.5 -2,-0.1 1,-0.0 0, 0.0 -0.946 86.0 -63.3-172.9-168.1 45.3 13.4 22.5 94 94 A P - 0 0 135 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 0.747 68.8-157.3 -69.7 -24.5 41.8 14.5 21.8 95 95 A S - 0 0 106 -4,-0.1 2,-0.1 -3,-0.0 -3,-0.0 0.244 27.4 -62.1 62.9 165.0 41.7 16.4 25.1 96 96 A S 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.383 360.0 360.0 -79.8 159.8 38.6 17.4 27.0 97 97 A G 0 0 88 -2,-0.1 -82,-0.0 0, 0.0 0, 0.0 0.247 360.0 360.0 85.1 360.0 35.9 19.7 25.5