==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 05-APR-07 2YTY . COMPND 2 MOLECULE: COLD SHOCK DOMAIN-CONTAINING PROTEIN E1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.K.GORONCY,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7237.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 40.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 22.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -47.6 46.5 -0.6 -5.8 2 2 A S - 0 0 121 4,-0.0 2,-0.3 2,-0.0 0, 0.0 0.015 360.0 -91.6 58.3-172.0 47.4 3.1 -6.6 3 3 A S + 0 0 119 3,-0.0 2,-0.3 2,-0.0 -1,-0.0 -0.914 66.4 88.8-136.3 162.3 45.2 5.2 -8.9 4 4 A G S S+ 0 0 67 -2,-0.3 -2,-0.0 3,-0.0 0, 0.0 -0.882 91.8 3.1 157.4-121.5 44.9 6.0 -12.6 5 5 A S S S- 0 0 122 -2,-0.3 -2,-0.0 0, 0.0 -1,-0.0 0.814 83.1-147.4 -69.5 -30.8 43.2 4.3 -15.5 6 6 A S - 0 0 94 2,-0.0 -4,-0.0 3,-0.0 -3,-0.0 0.937 12.5-151.5 59.8 96.9 41.7 1.8 -13.1 7 7 A G - 0 0 56 1,-0.1 2,-0.8 2,-0.0 3,-0.3 0.336 38.3 -65.7 -75.4-149.4 41.3 -1.5 -15.0 8 8 A R S S+ 0 0 249 1,-0.2 -1,-0.1 0, 0.0 3,-0.0 -0.715 88.4 112.2-108.8 80.6 38.7 -4.2 -14.3 9 9 A L + 0 0 125 -2,-0.8 2,-0.2 2,-0.1 -1,-0.2 0.698 59.7 71.0-115.1 -39.4 39.6 -5.6 -10.9 10 10 A L + 0 0 149 -3,-0.3 2,-0.1 1,-0.1 3,-0.0 -0.546 54.1 141.6 -83.0 147.3 36.6 -4.5 -8.7 11 11 A G - 0 0 56 -2,-0.2 2,-0.4 1,-0.1 -1,-0.1 -0.109 52.1 -23.7-144.6-115.6 33.2 -6.1 -9.2 12 12 A R - 0 0 223 -2,-0.1 2,-0.3 3,-0.0 -1,-0.1 -0.913 42.2-175.9-118.8 144.3 30.4 -7.2 -6.8 13 13 A N + 0 0 129 -2,-0.4 4,-0.0 1,-0.1 -3,-0.0 -0.833 55.5 73.5-142.7 100.9 30.6 -8.1 -3.1 14 14 A S S S+ 0 0 112 -2,-0.3 -1,-0.1 3,-0.0 -2,-0.0 0.203 94.3 43.7-170.7 -40.4 27.5 -9.3 -1.3 15 15 A N S S+ 0 0 168 2,-0.1 2,-0.4 1,-0.0 -2,-0.0 -0.141 96.5 87.7-113.3 35.9 26.7 -12.9 -2.4 16 16 A S - 0 0 45 49,-0.0 51,-0.1 51,-0.0 -1,-0.0 -0.943 61.6-152.5-140.3 115.7 30.3 -14.2 -2.2 17 17 A K - 0 0 166 -2,-0.4 2,-0.3 49,-0.3 49,-0.1 -0.213 19.4-116.9 -77.8 172.6 32.0 -15.6 0.9 18 18 A R + 0 0 156 47,-0.1 2,-0.3 45,-0.0 47,-0.2 -0.877 31.4 174.7-115.6 147.1 35.7 -15.5 1.6 19 19 A L E -A 64 0A 65 45,-1.5 45,-1.5 -2,-0.3 2,-0.3 -0.933 15.4-143.2-144.2 166.3 38.1 -18.4 2.1 20 20 A L E +A 63 0A 98 -2,-0.3 2,-0.3 43,-0.2 16,-0.2 -0.858 20.4 161.1-129.9 164.9 41.8 -19.2 2.6 21 21 A G E -A 62 0A 2 41,-1.0 41,-1.0 -2,-0.3 2,-0.4 -0.920 32.5-103.2-163.4-172.7 44.3 -21.8 1.4 22 22 A Y E -AB 61 34A 102 12,-1.0 12,-3.0 -2,-0.3 2,-0.3 -0.992 37.6-106.8-134.9 128.2 47.9 -22.8 0.9 23 23 A V E + B 0 33A 8 37,-1.8 36,-0.9 -2,-0.4 10,-0.2 -0.310 37.6 177.3 -53.4 107.8 49.9 -22.9 -2.4 24 24 A A E - 0 0 20 8,-1.7 2,-0.3 -2,-0.3 -1,-0.2 0.886 66.2 -1.6 -81.5 -42.7 50.2 -26.6 -3.0 25 25 A T E - B 0 32A 56 7,-0.9 7,-2.3 32,-0.1 2,-0.5 -0.994 57.8-155.5-152.1 144.1 52.0 -26.3 -6.3 26 26 A L E + B 0 31A 38 -2,-0.3 5,-0.2 5,-0.2 2,-0.1 -0.959 20.5 171.7-126.7 115.1 53.2 -23.5 -8.6 27 27 A K - 0 0 94 3,-1.8 2,-0.4 -2,-0.5 -2,-0.0 -0.425 47.8 -94.6-108.7-174.6 53.7 -24.1 -12.4 28 28 A D S S+ 0 0 150 -2,-0.1 3,-0.1 1,-0.1 26,-0.0 -0.309 119.2 18.2 -98.1 48.8 54.4 -21.9 -15.4 29 29 A N S S+ 0 0 95 -2,-0.4 17,-1.2 1,-0.4 2,-0.3 0.139 128.4 10.1-178.3 -39.5 50.8 -21.5 -16.4 30 30 A F E - C 0 45A 73 15,-0.2 -3,-1.8 16,-0.1 -1,-0.4 -0.969 58.2-147.5-153.1 164.8 48.6 -22.4 -13.4 31 31 A G E -BC 26 44A 0 13,-1.5 13,-1.3 -2,-0.3 2,-0.3 -0.867 9.0-133.7-134.7 168.6 48.7 -23.2 -9.7 32 32 A F E -BC 25 43A 59 -7,-2.3 -8,-1.7 -2,-0.3 -7,-0.9 -0.885 9.4-148.7-124.0 155.3 47.0 -25.3 -7.1 33 33 A I E -BC 23 42A 1 9,-1.1 9,-1.8 -2,-0.3 2,-0.6 -0.986 8.4-144.1-128.0 130.7 45.6 -24.7 -3.6 34 34 A E E -BC 22 41A 77 -12,-3.0 -12,-1.0 -2,-0.4 7,-0.2 -0.824 20.3-142.2 -96.4 117.4 45.5 -27.1 -0.7 35 35 A T - 0 0 26 5,-1.0 -14,-0.1 -2,-0.6 -1,-0.1 0.113 31.8 -95.1 -62.8-175.6 42.4 -26.6 1.5 36 36 A A S S+ 0 0 77 1,-0.2 -1,-0.1 -16,-0.2 -15,-0.1 0.775 126.4 52.0 -75.3 -27.4 42.5 -27.0 5.3 37 37 A N S S- 0 0 138 3,-0.0 -1,-0.2 1,-0.0 -3,-0.0 0.737 96.1-143.7 -80.0 -24.1 41.3 -30.7 5.0 38 38 A H S S+ 0 0 117 2,-0.1 -2,-0.1 1,-0.1 3,-0.1 0.838 73.9 103.4 63.1 33.4 44.1 -31.4 2.6 39 39 A D S S+ 0 0 151 1,-0.1 2,-0.2 0, 0.0 -1,-0.1 0.636 77.3 35.0-114.1 -27.9 41.7 -33.8 0.7 40 40 A K - 0 0 91 -7,-0.0 -5,-1.0 0, 0.0 2,-0.3 -0.760 67.7-141.6-124.0 170.8 40.8 -31.6 -2.3 41 41 A E E -C 34 0A 86 -2,-0.2 33,-0.3 -7,-0.2 2,-0.3 -0.989 10.7-134.0-137.0 144.9 42.6 -29.1 -4.5 42 42 A I E -C 33 0A 4 -9,-1.8 -9,-1.1 -2,-0.3 2,-0.5 -0.722 13.0-143.1 -98.7 147.9 41.5 -25.8 -6.2 43 43 A F E +Cd 32 75A 76 31,-0.7 33,-1.6 -2,-0.3 2,-0.4 -0.943 25.1 166.9-114.8 120.5 42.2 -24.9 -9.8 44 44 A F E -C 31 0A 3 -13,-1.3 -13,-1.5 -2,-0.5 2,-0.2 -0.997 25.6-136.2-135.6 133.4 43.0 -21.2 -10.6 45 45 A H E >> -C 30 0A 75 -2,-0.4 4,-1.4 31,-0.3 3,-0.9 -0.519 24.7-118.2 -85.7 154.1 44.4 -19.8 -13.9 46 46 A Y T 34 S+ 0 0 63 -17,-1.2 7,-0.2 1,-0.3 -1,-0.1 0.796 117.1 56.9 -59.5 -28.5 47.1 -17.1 -13.9 47 47 A S T 34 S+ 0 0 91 1,-0.2 -1,-0.3 3,-0.1 -17,-0.1 0.791 104.4 51.4 -73.4 -28.6 44.6 -14.8 -15.6 48 48 A E T <4 S+ 0 0 86 -3,-0.9 2,-0.4 30,-0.1 31,-0.4 0.763 93.9 87.1 -78.6 -26.6 42.2 -15.2 -12.7 49 49 A F < - 0 0 11 -4,-1.4 2,-0.7 29,-0.2 31,-0.2 -0.628 63.2-162.3 -79.2 126.1 44.9 -14.3 -10.2 50 50 A S + 0 0 59 29,-3.0 2,-0.3 -2,-0.4 31,-0.2 -0.843 60.2 28.8-113.2 95.3 45.2 -10.6 -9.6 51 51 A G S S- 0 0 64 -2,-0.7 2,-0.2 29,-0.1 3,-0.1 -0.834 114.4 -23.0 165.5-123.4 48.5 -9.7 -8.0 52 52 A D >> + 0 0 63 -2,-0.3 4,-1.8 1,-0.1 3,-1.3 -0.533 56.3 159.1-123.6 64.7 52.0 -11.3 -8.0 53 53 A V T 34 S+ 0 0 21 1,-0.3 -1,-0.1 2,-0.2 -3,-0.0 0.779 79.4 57.1 -56.1 -26.8 51.4 -14.9 -8.9 54 54 A D T 34 S+ 0 0 144 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.783 107.3 46.8 -75.2 -28.0 55.0 -15.0 -10.0 55 55 A S T <4 S+ 0 0 78 -3,-1.3 -2,-0.2 2,-0.1 -1,-0.2 0.758 91.0 104.5 -83.8 -27.3 56.1 -13.9 -6.5 56 56 A L < - 0 0 8 -4,-1.8 2,-0.2 1,-0.1 6,-0.0 -0.099 52.0-173.5 -52.7 153.0 53.9 -16.4 -4.8 57 57 A E > - 0 0 123 -32,-0.0 2,-0.6 0, 0.0 3,-0.6 -0.738 34.2 -65.9-138.2-174.1 55.6 -19.5 -3.3 58 58 A L T 3 S+ 0 0 120 -2,-0.2 -34,-0.1 1,-0.2 3,-0.1 -0.707 117.9 18.0 -84.4 119.1 54.8 -22.9 -1.7 59 59 A G T 3 S+ 0 0 44 -36,-0.9 -1,-0.2 -2,-0.6 -35,-0.1 0.066 90.7 129.3 111.8 -23.7 53.2 -22.5 1.7 60 60 A D < - 0 0 51 -3,-0.6 -37,-1.8 -37,-0.1 -1,-0.4 -0.181 58.6-114.5 -62.0 157.3 52.1 -18.9 1.3 61 61 A M E +A 22 0A 74 21,-0.2 21,-0.8 -39,-0.2 2,-0.3 -0.674 34.3 179.9 -96.6 151.0 48.5 -17.9 2.0 62 62 A V E -AE 21 81A 2 -41,-1.0 -41,-1.0 -2,-0.3 2,-0.4 -0.942 23.7-121.6-144.8 165.0 46.0 -16.7 -0.5 63 63 A E E +AE 20 80A 30 17,-2.5 17,-1.8 -2,-0.3 2,-0.3 -0.932 39.4 146.7-115.2 133.8 42.3 -15.6 -0.8 64 64 A Y E -A 19 0A 13 -45,-1.5 -45,-1.5 -2,-0.4 2,-0.3 -0.881 25.7-145.2-150.1 179.9 39.7 -17.2 -3.0 65 65 A S - 0 0 15 12,-0.3 12,-0.4 -2,-0.3 2,-0.3 -0.953 9.3-133.2-149.4 166.3 36.0 -18.1 -3.3 66 66 A L + 0 0 77 -2,-0.3 -49,-0.3 -49,-0.1 10,-0.1 -0.911 17.5 173.8-125.8 153.2 33.7 -20.7 -4.7 67 67 A S + 0 0 93 8,-0.3 2,-0.3 -2,-0.3 9,-0.0 -0.248 48.9 92.6-153.9 54.6 30.5 -20.6 -6.7 68 68 A K - 0 0 123 1,-0.1 3,-0.1 3,-0.0 -2,-0.0 -0.975 65.5-112.0-147.2 158.8 29.4 -24.1 -7.6 69 69 A G - 0 0 76 -2,-0.3 2,-0.7 1,-0.2 -1,-0.1 0.294 66.1 -45.5 -71.5-155.1 27.2 -26.9 -6.3 70 70 A K S S+ 0 0 217 4,-0.0 2,-0.3 2,-0.0 -1,-0.2 -0.704 86.5 119.3 -83.5 112.6 28.3 -30.3 -4.9 71 71 A G - 0 0 42 -2,-0.7 -3,-0.0 -3,-0.1 0, 0.0 -0.985 68.6-119.1-167.4 160.0 31.0 -31.8 -7.2 72 72 A N S S+ 0 0 141 -2,-0.3 2,-1.0 1,-0.1 -1,-0.1 0.779 96.5 81.1 -75.1 -27.7 34.6 -33.0 -7.4 73 73 A K + 0 0 140 -3,-0.1 2,-0.4 -31,-0.0 -1,-0.1 -0.704 62.3 159.5 -84.8 102.0 35.4 -30.4 -10.1 74 74 A V - 0 0 22 -2,-1.0 -31,-0.7 -33,-0.3 2,-0.3 -0.957 14.6-179.6-126.9 144.5 36.0 -27.1 -8.2 75 75 A S B -d 43 0A 26 -2,-0.4 -8,-0.3 -33,-0.2 -31,-0.2 -0.989 20.3-127.0-142.5 150.0 37.8 -24.0 -9.3 76 76 A A - 0 0 2 -33,-1.6 2,-0.3 -2,-0.3 -31,-0.3 -0.386 19.2-155.8 -90.3 171.0 38.7 -20.6 -7.7 77 77 A E + 0 0 73 -12,-0.4 -12,-0.3 1,-0.1 -28,-0.1 -0.992 65.6 6.4-151.1 141.2 38.0 -17.1 -9.1 78 78 A K S S- 0 0 123 -2,-0.3 -29,-0.2 1,-0.1 2,-0.1 0.930 80.0-170.2 53.5 50.4 39.5 -13.6 -8.7 79 79 A V + 0 0 1 -31,-0.4 -29,-3.0 -3,-0.1 2,-0.3 -0.439 10.3 171.4 -73.2 145.2 42.3 -15.0 -6.5 80 80 A N E -E 63 0A 53 -17,-1.8 -17,-2.5 -31,-0.2 -29,-0.1 -0.986 35.3-100.3-156.1 144.9 44.5 -12.6 -4.7 81 81 A K E -E 62 0A 85 -2,-0.3 2,-0.3 -31,-0.2 -19,-0.2 -0.286 40.6-175.3 -64.3 149.3 47.3 -12.7 -2.0 82 82 A T - 0 0 51 -21,-0.8 -21,-0.2 0, 0.0 2,-0.1 -0.997 18.8-128.7-150.1 144.7 46.3 -11.8 1.6 83 83 A S - 0 0 116 -2,-0.3 3,-0.0 1,-0.0 -21,-0.0 -0.450 23.4-155.2 -89.4 164.3 48.1 -11.4 4.9 84 84 A G - 0 0 40 -2,-0.1 2,-0.2 1,-0.1 -1,-0.0 -0.707 32.8 -61.3-130.4-177.6 47.3 -13.0 8.2 85 85 A P + 0 0 138 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.464 68.6 129.4 -69.8 132.9 47.6 -12.6 12.0 86 86 A S - 0 0 114 -2,-0.2 2,-0.3 -3,-0.0 -3,-0.0 -0.968 64.7 -59.8-174.1 163.3 51.1 -12.5 13.3 87 87 A S 0 0 129 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.364 360.0 360.0 -57.7 114.3 53.6 -10.6 15.5 88 88 A G 0 0 128 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 -0.871 360.0 360.0-103.7 360.0 53.8 -7.1 14.0