==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PLANT PROTEIN 15-FEB-05 1YVA . COMPND 2 MOLECULE: CRAMBIN; . SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; . AUTHOR H.-C.AHN,J.L.MARKLEY . 45 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3075.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 22 48.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 28.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A T 0 0 70 0, 0.0 2,-0.3 0, 0.0 32,-0.2 0.000 360.0 360.0 360.0 133.5 -2.9 -2.9 3.1 2 3 A a B +A 32 0A 0 30,-1.3 30,-1.8 43,-0.1 42,-0.1 -0.769 360.0 167.4-137.7 93.5 -1.1 -5.4 0.9 3 4 A b - 0 0 0 -2,-0.3 42,-2.5 28,-0.2 3,-0.1 -0.684 46.3-116.1-105.5 161.7 2.4 -4.4 -0.5 4 5 A P S S- 0 0 51 0, 0.0 2,-0.3 0, 0.0 40,-0.2 0.583 87.0 -40.0 -70.1 -10.2 5.1 -6.5 -2.2 5 6 A S S > S- 0 0 52 38,-0.1 4,-2.0 40,-0.1 5,-0.3 -0.992 82.0 -55.9 172.6-169.3 7.5 -5.9 0.7 6 7 A I H > S+ 0 0 114 -2,-0.3 4,-2.3 3,-0.2 5,-0.3 0.866 122.5 64.7 -65.8 -33.4 8.8 -3.3 3.3 7 8 A V H > S+ 0 0 107 2,-0.2 4,-1.9 3,-0.2 3,-0.2 0.987 114.0 27.8 -53.7 -66.7 9.7 -0.9 0.4 8 9 A A H >>>S+ 0 0 2 1,-0.2 4,-2.0 2,-0.2 3,-0.8 0.989 117.8 58.1 -60.3 -58.6 6.2 -0.3 -0.8 9 10 A R H 3X5S+ 0 0 99 -4,-2.0 4,-1.0 36,-0.3 -1,-0.2 0.852 110.6 46.4 -40.5 -37.1 4.5 -0.9 2.6 10 11 A S H 3<5S+ 0 0 63 -4,-2.3 4,-0.4 -5,-0.3 -1,-0.3 0.882 114.9 46.7 -76.1 -36.2 6.8 1.9 3.8 11 12 A N H XX5S+ 0 0 62 -4,-1.9 3,-3.0 -3,-0.8 4,-2.0 0.995 111.2 47.2 -69.1 -63.0 5.9 4.1 0.8 12 13 A F H 3X5S+ 0 0 7 -4,-2.0 4,-1.2 1,-0.3 -1,-0.2 0.873 114.6 50.9 -47.4 -34.6 2.1 3.7 0.8 13 14 A N H 3<S+ 0 0 23 -4,-2.0 5,-1.0 1,-0.2 4,-0.7 0.734 108.8 50.7 -91.3 -23.7 2.1 8.9 1.2 16 17 A R T <5S+ 0 0 140 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.1 0.580 90.8 82.2 -88.9 -8.2 -1.1 8.6 3.3 17 18 A L T 45S+ 0 0 136 -5,-0.1 -1,-0.2 -4,-0.1 -2,-0.1 0.930 99.2 35.7 -60.8 -45.2 0.6 10.4 6.2 18 19 A P T 45S- 0 0 99 0, 0.0 -2,-0.1 0, 0.0 -3,-0.1 0.985 134.1 -66.7 -73.6 -76.5 -0.2 13.8 4.7 19 20 A G T <5S+ 0 0 61 -4,-0.7 -3,-0.2 2,-0.0 -2,-0.1 0.179 84.1 133.4-169.1 25.9 -3.6 13.5 3.0 20 21 A T < - 0 0 30 -5,-1.0 2,-0.4 1,-0.0 -5,-0.0 -0.710 58.5-117.0 -91.3 141.3 -3.2 11.1 0.1 21 22 A P >> - 0 0 62 0, 0.0 3,-2.5 0, 0.0 4,-1.3 -0.578 27.3-119.1 -73.9 123.0 -5.7 8.3 -0.5 22 23 A E H 3> S+ 0 0 71 -2,-0.4 4,-2.7 1,-0.3 5,-0.3 0.766 113.0 71.0 -34.7 -28.1 -3.9 5.0 -0.2 23 24 A A H 3> S+ 0 0 51 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.957 102.1 39.6 -59.3 -47.5 -5.1 4.5 -3.8 24 25 A L H <> S+ 0 0 110 -3,-2.5 4,-0.9 1,-0.2 -1,-0.2 0.752 117.5 51.8 -73.9 -20.3 -2.6 7.2 -5.0 25 26 A c H X S+ 0 0 0 -4,-1.3 4,-0.9 2,-0.2 6,-0.3 0.772 115.2 39.3 -87.0 -24.9 -0.0 5.8 -2.5 26 27 A A H < S+ 0 0 6 -4,-2.7 -2,-0.2 -5,-0.3 -3,-0.2 0.505 115.3 54.0-100.2 -3.5 -0.4 2.2 -3.7 27 28 A T H < S+ 0 0 116 -4,-0.8 -2,-0.2 -5,-0.3 -3,-0.2 0.742 115.0 38.2 -97.2 -29.0 -0.7 3.2 -7.3 28 29 A Y H < S+ 0 0 200 -4,-0.9 -2,-0.2 -5,-0.2 -3,-0.1 0.813 127.7 34.8 -90.0 -33.6 2.6 5.2 -7.2 29 30 A T S < S- 0 0 33 -4,-0.9 -3,-0.2 -5,-0.2 -2,-0.1 0.701 108.6-120.7 -93.2 -19.7 4.5 2.8 -5.0 30 31 A G S S+ 0 0 40 1,-0.3 -4,-0.1 -5,-0.1 -5,-0.0 -0.163 70.6 125.0 108.9 -42.2 2.8 -0.4 -6.5 31 32 A b - 0 0 0 -6,-0.3 2,-0.3 1,-0.1 -1,-0.3 0.068 47.5-149.2 -43.8 166.4 1.3 -1.7 -3.2 32 33 A I B -A 2 0A 54 -30,-1.8 -30,-1.3 11,-0.2 2,-0.3 -1.000 6.8-144.5-145.6 146.5 -2.5 -2.3 -3.4 33 34 A I - 0 0 44 -2,-0.3 -7,-0.0 -32,-0.2 6,-0.0 -0.759 14.4-162.3-108.2 156.8 -5.4 -2.2 -1.0 34 35 A I - 0 0 44 -2,-0.3 2,-2.9 2,-0.1 5,-0.0 -0.998 31.4-114.4-142.0 145.2 -8.5 -4.5 -1.0 35 36 A P S S+ 0 0 147 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.323 98.3 37.0 -72.3 62.0 -12.0 -4.3 0.6 36 37 A G S S- 0 0 61 -2,-2.9 -2,-0.1 1,-0.0 3,-0.1 -0.755 94.5 -92.8-171.9-139.4 -11.3 -7.3 2.9 37 38 A A S S+ 0 0 95 -2,-0.2 2,-0.7 1,-0.1 -1,-0.0 0.238 86.5 93.2-148.2 12.1 -8.4 -8.7 4.9 38 39 A T - 0 0 123 -36,-0.0 -1,-0.1 0, 0.0 -36,-0.1 -0.875 57.9-158.5-116.4 106.3 -6.7 -11.3 2.6 39 40 A a - 0 0 48 -2,-0.7 5,-0.2 1,-0.1 -6,-0.1 -0.302 24.2-104.7 -74.8 164.5 -3.8 -9.9 0.6 40 41 A P - 0 0 47 0, 0.0 -1,-0.1 0, 0.0 -37,-0.0 0.129 30.6-105.3 -74.1-165.4 -2.6 -11.5 -2.6 41 42 A G S S+ 0 0 69 2,-0.1 3,-0.5 1,-0.1 -2,-0.0 0.723 117.3 48.3 -98.7 -25.2 0.6 -13.6 -2.9 42 43 A D S S+ 0 0 122 1,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.760 124.2 32.0 -85.6 -23.5 2.7 -11.1 -4.8 43 44 A Y S S+ 0 0 93 1,-0.1 -1,-0.2 -39,-0.1 -11,-0.2 -0.106 78.3 124.2-121.6 35.7 1.7 -8.3 -2.4 44 45 A A 0 0 65 -3,-0.5 -1,-0.1 1,-0.2 -5,-0.1 0.079 360.0 360.0 -84.2 29.2 1.4 -10.4 0.8 45 46 A N 0 0 78 -42,-2.5 -36,-0.3 -40,-0.1 -1,-0.2 -0.116 360.0 360.0-140.1 360.0 3.9 -8.2 2.6