==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-FEB-05 1YVC . COMPND 2 MOLECULE: MRR5; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS; . AUTHOR NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),P.ROSSI, . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5022.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 70.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 31.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 221 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.2 -18.4 21.9 0.3 2 2 A A - 0 0 63 4,-0.1 2,-1.1 2,-0.0 0, 0.0 -0.930 360.0-153.5-156.3 126.3 -18.2 19.0 2.8 3 3 A F S S- 0 0 165 2,-0.5 2,-0.9 -2,-0.3 4,-0.0 -0.537 88.2 -52.9 -95.2 65.3 -20.3 16.0 3.5 4 4 A G S S+ 0 0 74 -2,-1.1 -1,-0.0 2,-0.0 -2,-0.0 -0.533 132.2 11.2 97.0 -64.9 -19.3 15.7 7.1 5 5 A K S S- 0 0 160 -2,-0.9 2,-1.2 0, 0.0 -2,-0.5 -0.980 86.3-102.4-142.1 150.7 -15.6 15.7 6.2 6 6 A P S > S- 0 0 100 0, 0.0 3,-1.0 0, 0.0 4,-0.1 -0.639 79.5 -59.0 -76.5 94.7 -13.6 16.5 3.0 7 7 A A T 3 S- 0 0 59 -2,-1.2 0, 0.0 1,-0.2 0, 0.0 -0.063 88.1 -51.6 63.5-165.1 -12.7 13.0 1.8 8 8 A M T 3 S- 0 0 127 3,-0.0 -1,-0.2 1,-0.0 0, 0.0 -0.187 88.3 -85.4 -99.3 39.8 -10.7 10.5 3.9 9 9 A K S < S- 0 0 167 -3,-1.0 -2,-0.1 2,-0.1 -1,-0.0 0.705 82.3 -67.1 66.7 22.8 -8.0 13.2 4.5 10 10 A N - 0 0 133 -4,-0.1 -1,-0.1 1,-0.1 4,-0.0 0.936 54.7-129.9 60.5 99.1 -6.4 12.1 1.2 11 11 A V - 0 0 41 1,-0.1 -1,-0.1 2,-0.1 -2,-0.1 -0.656 9.2-138.1 -76.0 126.9 -5.0 8.5 1.4 12 12 A P S S+ 0 0 64 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.714 91.8 59.8 -58.5 -22.2 -1.4 8.5 0.1 13 13 A V S S- 0 0 2 23,-0.0 2,-0.6 6,-0.0 -2,-0.1 -0.945 76.4-153.3-114.7 121.0 -2.2 5.3 -1.8 14 14 A E > - 0 0 99 -2,-0.5 3,-1.6 -4,-0.0 42,-0.3 -0.839 18.8-127.0 -99.3 118.3 -4.9 5.3 -4.4 15 15 A A T 3 S+ 0 0 63 -2,-0.6 42,-0.2 1,-0.2 3,-0.1 -0.435 95.8 37.2 -63.8 125.1 -6.7 2.0 -5.0 16 16 A G T 3 S+ 0 0 63 40,-2.6 2,-0.3 1,-0.5 -1,-0.2 0.321 100.3 93.1 112.5 -4.4 -6.6 1.2 -8.7 17 17 A K < - 0 0 99 -3,-1.6 39,-2.1 39,-0.4 -1,-0.5 -0.829 65.3-135.5-118.6 158.5 -3.2 2.5 -9.3 18 18 A E E -A 55 0A 93 -2,-0.3 2,-0.3 37,-0.3 37,-0.3 -0.959 21.1-174.8-120.6 130.7 0.3 0.9 -9.3 19 19 A Y E -A 54 0A 56 35,-2.7 35,-3.2 -2,-0.4 2,-0.7 -0.894 30.1-114.5-122.7 149.6 3.3 2.4 -7.7 20 20 A E E +A 53 0A 137 -2,-0.3 2,-0.3 33,-0.3 33,-0.3 -0.767 49.3 166.5 -84.8 119.1 7.0 1.4 -7.6 21 21 A V E -A 52 0A 9 31,-3.4 31,-2.4 -2,-0.7 2,-0.3 -0.824 33.0-120.4-130.4 165.0 7.8 0.5 -4.0 22 22 A T E -A 51 0A 67 -2,-0.3 2,-0.7 13,-0.2 13,-0.6 -0.840 10.9-142.7-108.4 149.6 10.5 -1.2 -1.9 23 23 A I + 0 0 0 27,-1.3 26,-2.0 -2,-0.3 27,-0.2 -0.591 40.9 151.1-110.7 61.6 10.0 -4.2 0.3 24 24 A E + 0 0 115 -2,-0.7 2,-0.3 9,-0.3 -1,-0.2 0.744 64.0 48.4 -62.6 -24.8 12.3 -3.1 3.0 25 25 A D E -B 33 0A 60 8,-1.3 8,-3.0 -3,-0.2 2,-0.3 -0.881 65.4-158.1-124.3 149.2 10.2 -5.1 5.5 26 26 A M E -B 32 0A 76 -2,-0.3 6,-0.2 6,-0.2 2,-0.1 -0.952 17.6-132.3-123.2 147.8 8.8 -8.6 5.7 27 27 A G > - 0 0 30 4,-3.7 3,-1.3 -2,-0.3 4,-0.1 -0.422 30.8 -97.6 -96.5 173.4 5.8 -9.8 7.8 28 28 A K T 3 S+ 0 0 227 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.190 119.6 50.9 -76.0 18.3 5.3 -12.8 10.1 29 29 A G T 3 S- 0 0 69 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.045 124.8 -89.3-144.1 28.2 3.6 -14.6 7.3 30 30 A G S < S+ 0 0 60 -3,-1.3 2,-0.3 1,-0.3 -2,-0.1 0.712 84.9 140.7 68.5 20.1 5.9 -14.3 4.3 31 31 A D - 0 0 36 -4,-0.1 -4,-3.7 14,-0.1 2,-0.5 -0.724 49.9-128.0 -97.1 144.5 4.1 -11.1 3.3 32 32 A G E -BC 26 43A 0 11,-2.6 11,-3.6 -2,-0.3 2,-0.8 -0.797 12.6-145.8 -98.7 132.5 6.1 -8.1 2.0 33 33 A I E -BC 25 42A 17 -8,-3.0 -8,-1.3 -2,-0.5 -9,-0.3 -0.834 15.9-174.2-101.8 104.1 5.7 -4.7 3.6 34 34 A A E - C 0 41A 0 7,-3.0 7,-3.4 -2,-0.8 2,-0.4 -0.612 10.1-153.2 -84.2 157.2 6.0 -1.8 1.1 35 35 A R E - C 0 40A 102 -13,-0.6 2,-0.8 5,-0.2 -13,-0.2 -0.897 10.3-168.8-142.2 107.9 6.0 1.6 2.6 36 36 A I E > S- C 0 39A 27 3,-2.3 3,-2.6 -2,-0.4 -15,-0.0 -0.868 84.8 -29.7 -99.4 108.7 4.8 4.7 0.7 37 37 A D T 3 S- 0 0 168 -2,-0.8 -1,-0.2 1,-0.3 3,-0.1 0.629 128.6 -48.0 58.2 16.5 5.8 7.8 2.6 38 38 A G T 3 S+ 0 0 47 1,-0.4 2,-0.5 3,-0.0 -1,-0.3 0.144 107.2 133.1 110.3 -17.0 5.5 5.7 5.7 39 39 A F E < -C 36 0A 43 -3,-2.6 -3,-2.3 1,-0.1 2,-0.5 -0.564 59.9-125.8 -71.7 117.6 2.1 4.2 4.8 40 40 A V E -C 35 0A 49 -2,-0.5 24,-2.1 22,-0.3 2,-0.6 -0.536 29.2-174.9 -70.6 117.6 2.3 0.5 5.3 41 41 A V E -Cd 34 64A 0 -7,-3.4 -7,-3.0 -2,-0.5 2,-0.3 -0.941 15.6-144.2-119.3 108.4 1.3 -1.3 2.1 42 42 A F E -Cd 33 65A 49 22,-3.0 24,-3.2 -2,-0.6 -9,-0.2 -0.562 13.9-170.1 -78.6 129.5 1.1 -5.1 2.4 43 43 A V E > -C 32 0A 0 -11,-3.6 -11,-2.6 -2,-0.3 3,-1.3 -0.917 10.4-165.0-125.7 105.6 2.2 -7.1 -0.6 44 44 A P T 3 S+ 0 0 76 0, 0.0 23,-0.1 0, 0.0 -1,-0.1 0.548 89.7 34.0 -65.8 -8.3 1.4 -10.8 -0.5 45 45 A N T 3 S+ 0 0 70 -13,-0.1 2,-0.2 21,-0.1 -14,-0.1 0.108 89.1 112.4-142.5 20.3 3.8 -11.6 -3.4 46 46 A A < - 0 0 10 -3,-1.3 2,-0.3 -14,-0.1 -3,-0.1 -0.662 57.5-129.7 -97.2 155.9 6.7 -9.2 -3.2 47 47 A E > - 0 0 123 -2,-0.2 3,-1.5 -15,-0.1 -24,-0.3 -0.833 30.8-100.3-106.4 144.9 10.3 -10.1 -2.4 48 48 A K T 3 S+ 0 0 130 -2,-0.3 -24,-0.2 1,-0.2 3,-0.1 -0.336 103.5 14.3 -66.2 137.4 12.4 -8.3 0.2 49 49 A G T 3 S+ 0 0 58 -26,-2.0 -1,-0.2 1,-0.3 2,-0.2 0.424 99.4 122.2 82.9 -2.2 14.8 -5.7 -1.0 50 50 A S < - 0 0 42 -3,-1.5 -27,-1.3 -27,-0.2 2,-0.8 -0.621 65.0-129.4 -93.6 152.1 13.2 -5.5 -4.4 51 51 A V E +A 22 0A 103 -2,-0.2 2,-0.3 -29,-0.2 -29,-0.2 -0.877 42.5 178.8 -98.5 101.7 11.8 -2.5 -6.1 52 52 A I E -A 21 0A 3 -31,-2.4 -31,-3.4 -2,-0.8 2,-0.7 -0.814 33.8-126.8-115.2 145.2 8.4 -3.8 -7.2 53 53 A N E -A 20 0A 23 -2,-0.3 16,-2.9 -33,-0.3 2,-0.4 -0.808 36.0-171.7 -88.3 112.9 5.5 -2.2 -9.0 54 54 A V E -AE 19 68A 0 -35,-3.2 -35,-2.7 -2,-0.7 2,-0.8 -0.905 20.9-143.3-115.0 134.6 2.4 -2.8 -6.8 55 55 A K E -AE 18 67A 59 12,-2.4 12,-0.6 -2,-0.4 2,-0.6 -0.852 21.3-135.7 -93.4 111.1 -1.2 -2.2 -7.6 56 56 A V E + E 0 66A 0 -39,-2.1 -40,-2.6 -2,-0.8 -39,-0.4 -0.575 38.1 161.3 -67.9 113.1 -3.0 -1.0 -4.5 57 57 A T E + 0 0 71 8,-2.1 2,-0.3 -2,-0.6 9,-0.2 0.692 60.7 32.7-109.4 -26.0 -6.2 -3.0 -4.5 58 58 A A E - E 0 65A 31 7,-2.2 7,-2.4 2,-0.0 2,-0.5 -0.779 61.0-169.8-143.4 92.2 -7.5 -2.8 -1.0 59 59 A V E - E 0 64A 47 -2,-0.3 5,-0.3 5,-0.3 2,-0.1 -0.718 18.2-173.7 -79.9 125.9 -7.0 0.2 1.2 60 60 A K - 0 0 104 3,-3.1 -1,-0.0 -2,-0.5 -2,-0.0 -0.241 40.3 -77.3-106.0-164.2 -8.1 -0.6 4.8 61 61 A E S S+ 0 0 152 1,-0.2 3,-0.1 -2,-0.1 -2,-0.0 0.925 122.8 5.5 -66.0 -48.8 -8.4 1.5 8.0 62 62 A K S S+ 0 0 153 1,-0.1 -22,-0.3 -23,-0.0 2,-0.3 0.331 134.5 16.6-120.6 3.9 -4.7 1.8 9.0 63 63 A F - 0 0 71 -24,-0.1 -3,-3.1 -5,-0.0 2,-0.3 -0.968 66.6-124.7-166.6 169.0 -3.0 0.2 6.0 64 64 A A E -dE 41 59A 0 -24,-2.1 -22,-3.0 -2,-0.3 2,-0.4 -0.898 11.8-135.2-129.4 158.8 -3.4 -0.9 2.4 65 65 A F E +dE 42 58A 73 -7,-2.4 -7,-2.2 -2,-0.3 -8,-2.1 -0.940 26.4 175.5-114.5 136.1 -3.0 -4.1 0.4 66 66 A A E - E 0 56A 3 -24,-3.2 2,-0.3 -2,-0.4 -10,-0.2 -0.673 18.8-131.2-127.3-179.3 -1.3 -4.2 -3.0 67 67 A E E - E 0 55A 73 -12,-0.6 -12,-2.4 -2,-0.2 2,-0.7 -0.998 26.7-104.8-141.7 143.8 -0.3 -6.8 -5.6 68 68 A R E - E 0 54A 111 -2,-0.3 -14,-0.2 -14,-0.2 -50,-0.0 -0.549 25.3-172.6 -67.7 106.2 2.9 -7.5 -7.5 69 69 A V 0 0 58 -16,-2.9 -1,-0.2 -2,-0.7 -15,-0.1 0.103 360.0 360.0 -83.5 21.7 2.3 -6.3 -11.1 70 70 A L 0 0 141 -17,-0.2 -1,-0.1 0, 0.0 -2,-0.1 -0.772 360.0 360.0-103.6 360.0 5.6 -8.0 -11.9