==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 09-APR-07 2YV4 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH0435; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR Y.AGARI,A.SHINKAI,S.YOKOYAMA,S.KURAMITSU,RIKEN STRUCTURAL . 102 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5745.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 75 73.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 23 22.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 236 A A 0 0 119 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 111.2 32.6 -7.3 9.3 2 237 A P - 0 0 37 0, 0.0 4,-0.1 0, 0.0 64,-0.1 -0.330 360.0-139.5 -67.7 148.4 34.7 -4.8 7.3 3 238 A N S S+ 0 0 144 62,-0.2 2,-0.1 2,-0.1 3,-0.1 0.814 81.5 78.9 -76.0 -31.9 38.4 -4.7 7.7 4 239 A A S S- 0 0 8 61,-0.2 71,-0.2 1,-0.1 2,-0.2 -0.387 94.3-101.0 -77.6 155.2 38.6 -0.9 7.6 5 240 A E E -a 75 0A 93 69,-2.3 71,-3.3 -2,-0.1 2,-0.5 -0.539 40.0-139.7 -71.4 139.8 37.7 1.3 10.6 6 241 A V E -a 76 0A 7 91,-0.4 93,-2.9 -2,-0.2 2,-0.5 -0.908 20.6-177.1-110.4 130.3 34.2 2.6 10.2 7 242 A I E -ab 77 99A 6 69,-2.9 71,-3.0 -2,-0.5 2,-0.6 -0.984 10.0-158.7-126.7 120.7 33.3 6.2 11.1 8 243 A V E -ab 78 100A 0 91,-3.2 93,-2.9 -2,-0.5 2,-0.7 -0.873 5.4-158.9-100.2 122.5 29.7 7.5 10.8 9 244 A V E -ab 79 101A 0 69,-2.0 71,-2.9 -2,-0.6 2,-0.3 -0.903 19.9-176.8-104.0 115.6 29.4 11.3 10.5 10 245 A E E +ab 80 102A 69 91,-2.1 93,-3.3 -2,-0.7 71,-0.2 -0.753 25.6 76.9-115.5 160.2 25.9 12.4 11.5 11 246 A G E S-a 81 0A 8 69,-1.1 71,-1.9 -2,-0.3 72,-0.3 -0.843 84.4 -20.5 136.9-174.9 24.0 15.7 11.7 12 247 A P >> - 0 0 37 0, 0.0 4,-2.5 0, 0.0 3,-0.6 -0.360 68.6-112.5 -62.9 146.6 22.2 18.0 9.3 13 248 A R H 3> S+ 0 0 91 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.853 114.1 56.8 -46.8 -46.4 23.4 17.6 5.7 14 249 A E H 3> S+ 0 0 168 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.920 113.5 39.3 -54.0 -48.5 25.1 21.0 5.5 15 250 A K H <> S+ 0 0 110 -3,-0.6 4,-2.5 2,-0.2 -1,-0.2 0.846 111.9 57.2 -70.9 -37.4 27.3 20.3 8.6 16 251 A V H X S+ 0 0 0 -4,-2.5 4,-3.1 1,-0.2 5,-0.3 0.939 103.8 52.8 -61.1 -46.2 28.0 16.7 7.6 17 252 A K H X S+ 0 0 52 -4,-2.5 4,-2.0 1,-0.2 -1,-0.2 0.903 112.3 45.4 -56.7 -42.1 29.4 17.7 4.2 18 253 A G H X S+ 0 0 43 -4,-1.2 4,-1.9 -5,-0.2 -1,-0.2 0.896 113.6 49.1 -68.8 -39.8 31.8 20.1 6.0 19 254 A K H X S+ 0 0 49 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.932 111.4 48.4 -66.2 -45.7 32.8 17.6 8.7 20 255 A I H X S+ 0 0 0 -4,-3.1 4,-2.7 2,-0.2 5,-0.2 0.936 109.4 52.7 -60.4 -46.1 33.5 14.8 6.2 21 256 A T H X S+ 0 0 46 -4,-2.0 4,-1.7 -5,-0.3 -1,-0.2 0.920 111.8 47.9 -53.7 -44.6 35.6 17.2 4.0 22 257 A E H X S+ 0 0 82 -4,-1.9 4,-2.2 1,-0.2 -2,-0.2 0.926 111.5 48.3 -62.3 -49.9 37.6 18.0 7.1 23 258 A L H X S+ 0 0 20 -4,-2.7 4,-3.3 2,-0.2 5,-0.2 0.881 107.2 55.5 -61.0 -42.7 38.1 14.4 8.2 24 259 A V H X S+ 0 0 2 -4,-2.7 4,-3.0 2,-0.2 5,-0.2 0.955 109.9 46.0 -56.4 -50.7 39.2 13.2 4.8 25 260 A K H X S+ 0 0 146 -4,-1.7 4,-2.7 -5,-0.2 -1,-0.2 0.928 114.0 49.9 -58.0 -45.4 42.0 15.8 4.7 26 261 A E H X S+ 0 0 83 -4,-2.2 4,-1.0 1,-0.2 -2,-0.2 0.930 112.6 45.6 -59.4 -48.1 43.0 14.9 8.3 27 262 A L H ><>S+ 0 0 7 -4,-3.3 5,-2.2 2,-0.2 3,-0.5 0.917 113.0 50.6 -63.3 -43.0 43.1 11.2 7.5 28 263 A K H ><5S+ 0 0 81 -4,-3.0 3,-2.2 1,-0.2 -2,-0.2 0.941 106.7 53.6 -60.4 -48.0 45.1 11.8 4.3 29 264 A E H 3<5S+ 0 0 169 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.757 108.1 52.8 -58.9 -23.6 47.6 14.0 6.1 30 265 A R T <<5S- 0 0 167 -4,-1.0 -1,-0.3 -3,-0.5 -2,-0.2 0.512 122.3-107.8 -89.1 -7.0 48.1 11.1 8.5 31 266 A G T < 5S+ 0 0 62 -3,-2.2 2,-0.3 -4,-0.4 -3,-0.2 0.501 71.0 140.7 95.0 4.3 48.7 8.6 5.7 32 267 A K < - 0 0 62 -5,-2.2 2,-0.6 -6,-0.2 -1,-0.3 -0.651 53.7-129.7 -83.8 134.1 45.4 6.7 5.9 33 268 A K - 0 0 79 -2,-0.3 41,-1.9 39,-0.2 42,-1.7 -0.749 37.1-158.1 -79.9 122.9 43.8 5.7 2.6 34 269 A V E -c 75 0A 0 -2,-0.6 11,-2.2 40,-0.2 12,-1.4 -0.885 16.7-168.7-116.2 139.5 40.3 6.9 3.1 35 270 A G E -cd 76 46A 0 40,-2.5 42,-3.0 -2,-0.4 2,-0.4 -0.906 8.2-151.7-121.5 148.3 37.0 6.0 1.5 36 271 A V E -cd 77 47A 0 10,-2.4 12,-1.8 -2,-0.3 2,-0.7 -0.976 7.4-167.2-122.6 132.4 33.6 7.7 1.6 37 272 A I E +cd 78 48A 0 40,-2.7 42,-2.7 -2,-0.4 2,-0.2 -0.955 56.9 83.4-113.5 103.7 30.2 6.0 1.3 38 273 A G E S- d 0 49A 0 10,-1.2 12,-2.2 -2,-0.7 13,-0.4 -0.795 95.3 -53.9-167.1-148.9 27.9 8.9 0.9 39 274 A S S S+ 0 0 54 -2,-0.2 2,-0.3 1,-0.2 10,-0.1 0.629 115.5 3.1 -89.2 -17.5 26.4 11.4 -1.6 40 275 A E S S- 0 0 86 8,-0.1 -1,-0.2 1,-0.1 8,-0.1 -0.968 73.6-108.8-159.6 166.9 29.8 12.6 -2.9 41 276 A S > - 0 0 47 -2,-0.3 3,-1.4 6,-0.1 5,-0.1 0.808 24.1-152.5 -74.5 -34.0 33.5 11.9 -2.5 42 277 A Y T 3 S- 0 0 17 1,-0.3 -18,-0.1 2,-0.1 -1,-0.1 0.814 74.2 -67.2 60.4 26.0 34.7 15.0 -0.6 43 278 A N T 3 S+ 0 0 120 1,-0.1 -1,-0.3 -19,-0.1 4,-0.1 0.767 90.4 159.0 64.2 30.7 37.9 14.0 -2.4 44 279 A A < - 0 0 14 -3,-1.4 -9,-0.2 2,-0.1 -1,-0.1 -0.168 56.0-108.5 -70.8 176.2 38.5 10.8 -0.5 45 280 A D S S+ 0 0 74 -11,-2.2 2,-0.3 1,-0.2 -10,-0.2 0.742 103.0 23.8 -78.1 -24.2 40.7 8.2 -2.1 46 281 A E E -d 35 0A 39 -12,-1.4 -10,-2.4 -5,-0.1 2,-0.4 -0.993 69.1-167.5-142.1 147.0 37.7 6.0 -2.8 47 282 A F E +d 36 0A 75 -2,-0.3 2,-0.3 -12,-0.2 -10,-0.2 -0.996 10.2 173.6-140.6 143.6 34.0 6.6 -3.2 48 283 A F E -d 37 0A 44 -12,-1.8 -10,-1.2 -2,-0.4 2,-0.2 -0.970 39.0-110.1-146.5 129.4 30.8 4.5 -3.4 49 284 A F E -d 38 0A 91 -2,-0.3 -10,-0.2 -12,-0.2 15,-0.1 -0.414 19.7-158.7 -64.9 128.4 27.3 6.0 -3.5 50 285 A L - 0 0 2 -12,-2.2 10,-0.3 -2,-0.2 11,-0.2 0.875 41.9-111.5 -74.1 -39.7 25.3 5.4 -0.3 51 286 A G - 0 0 5 -13,-0.4 -1,-0.2 1,-0.1 6,-0.0 -0.342 10.8-111.4 119.1 157.6 21.9 5.8 -1.8 52 287 A S S S+ 0 0 54 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.1 0.291 92.0 52.8-107.4 9.0 19.3 8.6 -1.4 53 288 A S S > S- 0 0 38 1,-0.1 4,-2.3 -3,-0.1 5,-0.1 -0.950 84.5-113.7-140.1 160.0 16.6 6.6 0.5 54 289 A V H > S+ 0 0 74 -2,-0.3 4,-2.2 30,-0.3 5,-0.2 0.922 119.2 52.6 -58.4 -43.3 16.4 4.4 3.6 55 290 A E H > S+ 0 0 161 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.891 108.7 49.4 -59.7 -41.5 15.7 1.4 1.3 56 291 A E H > S+ 0 0 64 2,-0.2 4,-3.2 1,-0.2 5,-0.3 0.888 108.0 54.2 -66.1 -38.9 18.8 2.1 -0.8 57 292 A V H X S+ 0 0 0 -4,-2.3 4,-2.6 1,-0.2 5,-0.2 0.959 107.9 48.6 -58.7 -52.4 21.0 2.4 2.2 58 293 A A H < S+ 0 0 50 -4,-2.2 4,-0.3 1,-0.2 -1,-0.2 0.838 118.0 43.8 -56.3 -33.3 19.9 -1.0 3.5 59 294 A K H < S+ 0 0 164 -4,-1.5 4,-0.3 -5,-0.2 -2,-0.2 0.857 121.8 32.5 -82.4 -38.6 20.6 -2.4 0.0 60 295 A N H X S+ 0 0 33 -4,-3.2 4,-2.8 -10,-0.3 5,-0.2 0.747 94.6 83.5 -93.7 -26.5 23.9 -0.7 -0.8 61 296 A L H X S+ 0 0 0 -4,-2.6 4,-2.6 -5,-0.3 5,-0.2 0.893 96.3 39.1 -46.0 -59.9 25.8 -0.3 2.5 62 297 A F H > S+ 0 0 72 -4,-0.3 4,-2.0 1,-0.2 -1,-0.2 0.845 115.7 53.0 -63.9 -33.3 27.4 -3.8 2.7 63 298 A K H > S+ 0 0 126 -4,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.909 110.9 49.1 -66.0 -38.6 28.1 -3.9 -1.0 64 299 A A H X S+ 0 0 0 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.922 109.6 50.1 -65.1 -46.0 29.9 -0.5 -0.5 65 300 A L H X S+ 0 0 11 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.859 108.1 52.9 -62.8 -35.6 31.9 -1.8 2.5 66 301 A R H X S+ 0 0 155 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.901 107.9 52.3 -66.7 -37.5 33.0 -4.9 0.5 67 302 A Y H X S+ 0 0 98 -4,-1.7 4,-1.5 1,-0.2 -2,-0.2 0.928 108.8 50.9 -61.1 -45.3 34.2 -2.5 -2.2 68 303 A X H <>S+ 0 0 0 -4,-2.2 5,-2.0 1,-0.2 4,-0.3 0.899 111.3 45.9 -60.9 -44.3 36.2 -0.5 0.4 69 304 A D H ><5S+ 0 0 32 -4,-2.3 3,-1.6 1,-0.2 -1,-0.2 0.906 109.4 54.3 -67.8 -39.0 37.9 -3.6 1.8 70 305 A K H 3<5S+ 0 0 185 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.836 108.8 51.6 -61.6 -29.9 38.7 -4.9 -1.7 71 306 A A T 3<5S- 0 0 23 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.492 113.2-123.0 -84.6 -4.5 40.3 -1.5 -2.3 72 307 A G T < 5 + 0 0 47 -3,-1.6 -3,-0.2 -4,-0.3 -39,-0.2 0.735 45.2 174.0 70.8 22.8 42.4 -1.8 0.9 73 308 A V < - 0 0 6 -5,-2.0 -1,-0.2 1,-0.1 -39,-0.2 -0.376 26.9-152.3 -65.0 140.8 41.1 1.4 2.5 74 309 A D S S+ 0 0 76 -41,-1.9 -69,-2.3 1,-0.3 2,-0.4 0.860 79.9 21.0 -80.1 -40.5 42.2 2.0 6.1 75 310 A V E -ac 5 34A 2 -42,-1.7 -40,-2.5 -71,-0.2 2,-0.5 -0.997 64.8-158.2-135.7 136.6 39.2 4.1 7.2 76 311 A V E -ac 6 35A 1 -71,-3.3 -69,-2.9 -2,-0.4 2,-0.6 -0.959 6.8-157.5-115.3 125.0 35.7 4.3 5.8 77 312 A I E -ac 7 36A 0 -42,-3.0 -40,-2.7 -2,-0.5 2,-0.6 -0.907 6.9-158.7-103.4 122.5 33.5 7.3 6.5 78 313 A A E -ac 8 37A 2 -71,-3.0 -69,-2.0 -2,-0.6 2,-0.4 -0.914 17.4-130.2-104.5 121.4 29.8 6.7 6.1 79 314 A E E -a 9 0A 5 -42,-2.7 2,-0.3 -2,-0.6 -69,-0.2 -0.562 26.5-178.1 -70.3 121.1 27.7 9.8 5.6 80 315 A G E +a 10 0A 1 -71,-2.9 -69,-1.1 -2,-0.4 -1,-0.1 -0.610 6.2 179.9-124.7 74.5 24.8 9.8 8.0 81 316 A V E -a 11 0A 1 -2,-0.3 6,-2.9 -71,-0.2 7,-0.3 -0.370 30.9-134.7 -74.7 151.4 22.6 12.9 7.4 82 317 A E S > S+ 0 0 129 -71,-1.9 3,-2.0 4,-0.2 6,-0.2 0.896 78.0 98.0 -70.3 -41.5 19.5 13.6 9.5 83 318 A E G > S+ 0 0 68 1,-0.3 3,-1.4 -72,-0.3 4,-0.2 -0.190 99.2 0.7 -52.6 133.9 17.4 14.4 6.4 84 319 A R G 3 S- 0 0 189 1,-0.3 -1,-0.3 2,-0.1 -30,-0.3 0.659 116.6 -85.1 59.6 19.1 15.2 11.6 5.2 85 320 A G G <> S+ 0 0 30 -3,-2.0 4,-2.1 1,-0.1 -1,-0.3 0.668 86.8 139.2 61.0 21.2 16.5 9.3 8.0 86 321 A L H <> + 0 0 13 -3,-1.4 4,-2.5 1,-0.2 -4,-0.2 0.924 69.6 51.4 -62.5 -45.0 19.6 8.2 6.1 87 322 A G H > S+ 0 0 7 -6,-2.9 4,-2.3 1,-0.2 -1,-0.2 0.911 110.3 48.1 -58.6 -45.5 21.9 8.4 9.2 88 323 A L H > S+ 0 0 111 -7,-0.3 4,-2.6 1,-0.2 -1,-0.2 0.921 111.7 50.6 -61.5 -42.7 19.6 6.3 11.3 89 324 A A H X S+ 0 0 10 -4,-2.1 4,-2.7 2,-0.2 5,-0.2 0.893 108.1 53.4 -62.0 -40.9 19.3 3.8 8.5 90 325 A V H X S+ 0 0 0 -4,-2.5 4,-1.3 1,-0.2 -2,-0.2 0.952 111.4 44.7 -58.7 -50.6 23.1 3.6 8.2 91 326 A X H < S+ 0 0 52 -4,-2.3 -2,-0.2 2,-0.2 -1,-0.2 0.896 112.3 52.8 -62.0 -41.0 23.5 2.9 12.0 92 327 A N H < S+ 0 0 119 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.951 111.4 44.5 -59.7 -50.6 20.7 0.3 11.8 93 328 A R H < 0 0 106 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.740 360.0 360.0 -65.9 -21.2 22.3 -1.6 9.0 94 329 A L < 0 0 39 -4,-1.3 3,-0.4 -5,-0.2 -1,-0.3 0.576 360.0 360.0 -87.2 360.0 25.6 -1.2 10.8 95 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 96 333 A S 0 0 127 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -43.5 31.2 -5.3 14.5 97 334 A G + 0 0 53 -3,-0.4 -91,-0.4 1,-0.0 2,-0.3 0.284 360.0 177.4 110.2 127.4 32.0 -1.8 15.7 98 335 A Y - 0 0 73 -93,-0.1 2,-0.3 -90,-0.0 -91,-0.2 -0.992 25.0-120.1-157.3 154.5 32.0 1.8 14.5 99 336 A K E -b 7 0A 110 -93,-2.9 -91,-3.2 -2,-0.3 2,-0.5 -0.706 19.6-147.1 -96.5 148.8 32.7 5.3 15.6 100 337 A I E -b 8 0A 76 -2,-0.3 2,-0.5 -93,-0.2 -91,-0.2 -0.973 12.3-171.3-120.4 123.9 30.2 8.1 15.6 101 338 A V E -b 9 0A 25 -93,-2.9 -91,-2.1 -2,-0.5 2,-0.4 -0.963 19.3-135.9-117.7 123.2 31.2 11.7 14.9 102 339 A K E b 10 0A 177 -2,-0.5 -91,-0.2 -93,-0.2 -93,-0.1 -0.642 360.0 360.0 -77.0 126.3 28.8 14.6 15.4 103 340 A A 0 0 35 -93,-3.3 -87,-0.2 -2,-0.4 -88,-0.1 -0.284 360.0 360.0 -69.7 360.0 29.0 17.0 12.5