==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 13-APR-07 2YVR . COMPND 2 MOLECULE: TRANSCRIPTION INTERMEDIARY FACTOR 1-BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.WANG,S.KISHISHITA,K.MURAYAMA,C.TAKEMOTO,T.TERADA, . 90 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6572.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 22.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A G 0 0 121 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 164.4 29.4 15.1 19.3 2 4 A E + 0 0 116 1,-0.0 52,-0.3 3,-0.0 53,-0.1 0.230 360.0 90.0-124.9 8.7 26.3 13.1 18.2 3 5 A R + 0 0 138 51,-0.1 68,-0.5 2,-0.1 2,-0.3 0.878 69.3 75.1 -80.3 -39.0 27.5 9.4 18.4 4 6 A T S S- 0 0 82 66,-0.1 2,-0.5 10,-0.0 66,-0.1 -0.596 75.9-150.0 -71.2 134.3 26.6 8.6 22.0 5 7 A V - 0 0 11 -2,-0.3 10,-3.0 10,-0.3 2,-0.3 -0.946 7.1-152.0-113.1 125.0 22.8 8.1 22.1 6 8 A Y B -A 14 0A 115 -2,-0.5 5,-0.1 8,-0.3 6,-0.1 -0.680 24.0-102.9 -98.3 147.6 21.0 8.9 25.3 7 9 A C - 0 0 11 6,-3.4 6,-0.2 3,-0.5 -1,-0.1 -0.360 20.0-141.0 -63.5 144.2 17.8 7.4 26.5 8 10 A N S S+ 0 0 132 40,-0.1 3,-0.2 1,-0.1 -1,-0.1 0.620 102.1 40.9 -81.1 -15.4 14.7 9.6 26.0 9 11 A V S S+ 0 0 74 1,-0.2 2,-1.0 4,-0.1 -1,-0.1 0.852 121.0 38.6 -96.8 -49.0 13.3 8.6 29.4 10 12 A H S > S- 0 0 55 1,-0.1 3,-2.6 3,-0.1 -3,-0.5 -0.758 81.9-162.8-105.1 83.4 16.5 8.6 31.5 11 13 A K T 3 S+ 0 0 156 -2,-1.0 -1,-0.1 1,-0.3 -5,-0.0 0.655 82.0 40.6 -41.0 -35.0 18.1 11.7 30.0 12 14 A H T 3 S+ 0 0 146 -6,-0.1 -1,-0.3 -3,-0.1 -4,-0.1 0.289 94.8 97.8-105.0 14.6 21.7 11.1 31.2 13 15 A E < - 0 0 33 -3,-2.6 -6,-3.4 -6,-0.2 2,-0.1 -0.871 67.3-138.2-104.1 125.2 21.8 7.4 30.6 14 16 A P B -A 6 0A 40 0, 0.0 2,-1.1 0, 0.0 14,-0.4 -0.483 23.9-109.9 -79.9 151.1 23.3 6.1 27.3 15 17 A L + 0 0 13 -10,-3.0 -10,-0.3 1,-0.2 12,-0.2 -0.736 59.2 145.7 -81.0 105.2 21.7 3.3 25.3 16 18 A V + 0 0 49 -2,-1.1 27,-3.0 10,-0.9 28,-0.4 0.350 50.4 63.3-121.4 -1.4 24.2 0.6 25.9 17 19 A L E -BC 26 42B 5 9,-2.2 9,-2.3 25,-0.3 2,-0.4 -0.826 59.7-149.7-125.0 162.9 22.0 -2.4 26.0 18 20 A F E -BC 25 41B 22 23,-2.1 23,-1.5 -2,-0.3 2,-0.8 -0.984 16.9-140.8-134.5 118.9 19.7 -4.3 23.6 19 21 A C E >> -BC 24 40B 0 5,-3.2 5,-1.5 -2,-0.4 4,-1.3 -0.750 11.9-166.3 -82.7 112.7 16.7 -6.0 25.1 20 22 A E T 45S+ 0 0 85 19,-1.7 20,-0.2 -2,-0.8 -1,-0.2 0.789 84.8 59.2 -68.1 -30.9 16.4 -9.3 23.1 21 23 A S T 45S+ 0 0 67 18,-1.3 -1,-0.2 1,-0.2 19,-0.1 0.900 122.9 22.7 -66.2 -36.3 12.9 -10.0 24.4 22 24 A C T 45S- 0 0 50 17,-0.3 -2,-0.2 2,-0.2 -1,-0.2 0.425 97.4-128.7-109.6 -2.1 11.6 -6.7 22.9 23 25 A D T <5 + 0 0 85 -4,-1.3 2,-0.3 1,-0.2 -3,-0.2 0.950 66.3 130.8 48.5 56.5 14.2 -6.1 20.2 24 26 A T E < -B 19 0B 27 -5,-1.5 -5,-3.2 65,-0.1 2,-0.3 -0.992 63.8-113.7-141.5 145.8 14.7 -2.6 21.6 25 27 A L E +B 18 0B 15 -2,-0.3 2,-0.3 24,-0.3 -7,-0.2 -0.604 43.4 179.1 -76.0 138.8 17.6 -0.4 22.6 26 28 A T E -B 17 0B 1 -9,-2.3 -9,-2.2 -2,-0.3 -10,-0.9 -0.915 25.2-136.7-139.6 163.1 17.7 0.3 26.4 27 29 A C > - 0 0 0 -2,-0.3 4,-2.7 -12,-0.2 5,-0.2 -0.630 47.2 -89.3-108.1 175.0 19.7 2.1 29.0 28 30 A R H > S+ 0 0 140 -14,-0.4 4,-2.2 1,-0.2 5,-0.2 0.900 127.6 45.8 -52.6 -45.8 20.5 0.6 32.4 29 31 A D H > S+ 0 0 58 2,-0.2 4,-2.0 1,-0.2 5,-0.3 0.899 111.8 50.8 -66.6 -40.7 17.4 1.9 34.1 30 32 A C H 4>S+ 0 0 18 1,-0.2 5,-2.2 2,-0.2 -1,-0.2 0.935 111.8 48.9 -60.4 -46.0 15.1 0.8 31.2 31 33 A Q H <5S+ 0 0 9 -4,-2.7 7,-0.3 1,-0.2 -2,-0.2 0.893 114.8 42.3 -65.3 -40.1 16.6 -2.6 31.4 32 34 A L H <5S+ 0 0 125 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.764 127.7 26.7 -77.0 -25.6 16.2 -3.0 35.1 33 35 A N T ><5S+ 0 0 110 -4,-2.0 3,-1.7 -5,-0.2 -3,-0.2 0.826 130.7 22.9 -99.5 -83.8 12.7 -1.5 35.4 34 36 A A T 3 5S+ 0 0 78 -5,-0.3 -3,-0.2 1,-0.3 -4,-0.1 0.801 132.9 41.9 -59.8 -28.6 10.5 -1.7 32.4 35 37 A H T > -C 17 0B 94 3,-0.5 3,-0.8 -2,-0.3 -25,-0.3 -0.618 35.3-121.6 -73.1 143.7 25.3 -5.0 26.4 43 45 A L T 3 S+ 0 0 25 -27,-3.0 -1,-0.1 1,-0.3 -26,-0.1 0.920 116.5 46.7 -54.3 -48.4 25.9 -3.8 22.9 44 46 A E T 3 0 0 176 -28,-0.4 -1,-0.3 1,-0.2 -27,-0.1 0.734 360.0 360.0 -64.4 -20.3 29.6 -4.0 23.2 45 47 A D < 0 0 142 -3,-0.8 -3,-0.5 0, 0.0 -1,-0.2 -0.572 360.0 360.0 85.5 360.0 28.9 -7.5 24.6 46 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 47 3 B G 0 0 108 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 62.2 5.1 4.6 23.4 48 4 B E + 0 0 128 1,-0.2 -40,-0.1 3,-0.0 -39,-0.1 -0.089 360.0 128.3-110.3 33.2 8.9 5.0 23.2 49 5 B R + 0 0 216 -25,-0.1 2,-0.3 2,-0.0 -24,-0.3 0.910 59.8 57.4 -55.5 -50.9 9.5 1.8 21.2 50 6 B T - 0 0 65 -3,-0.2 2,-0.5 -26,-0.1 -26,-0.1 -0.670 67.6-156.9 -89.7 137.6 11.6 3.2 18.4 51 7 B V - 0 0 20 -2,-0.3 10,-2.8 10,-0.3 2,-0.2 -0.950 19.0-148.8-110.8 132.4 14.8 5.0 19.1 52 8 B Y B -D 60 0C 109 -2,-0.5 5,-0.1 8,-0.3 2,-0.1 -0.651 19.9 -92.3-106.1 161.3 15.9 7.5 16.3 53 9 B C - 0 0 9 6,-2.8 6,-0.2 3,-0.6 -1,-0.1 -0.384 22.1-137.8 -68.9 141.3 19.2 8.7 14.9 54 10 B N S S+ 0 0 47 -52,-0.3 3,-0.2 1,-0.1 -1,-0.1 0.771 105.2 33.4 -66.9 -27.0 20.6 11.9 16.4 55 11 B V S S+ 0 0 86 1,-0.2 2,-1.1 -53,-0.1 -1,-0.1 0.871 120.5 42.7 -96.7 -50.6 21.5 12.9 12.8 56 12 B H S > S- 0 0 57 1,-0.2 3,-2.1 3,-0.1 -3,-0.6 -0.787 79.5-164.5-101.1 87.7 18.8 11.5 10.5 57 13 B K T 3 S+ 0 0 134 -2,-1.1 -1,-0.2 1,-0.3 -5,-0.0 0.647 80.4 43.9 -51.2 -28.7 15.9 12.5 12.8 58 14 B H T 3 S+ 0 0 173 -6,-0.1 -1,-0.3 -3,-0.1 -2,-0.0 0.456 94.5 96.5 -99.5 2.9 13.2 10.3 11.2 59 15 B E S < S- 0 0 55 -3,-2.1 -6,-2.8 -6,-0.2 -3,-0.1 -0.774 73.0-126.2 -96.8 129.2 15.4 7.2 10.8 60 16 B P B -D 52 0C 37 0, 0.0 2,-0.8 0, 0.0 14,-0.4 -0.431 22.5-119.2 -69.1 141.6 15.3 4.4 13.4 61 17 B L + 0 0 11 -10,-2.8 -10,-0.3 1,-0.2 12,-0.3 -0.735 54.7 147.7 -80.5 111.4 18.6 3.3 14.9 62 18 B V + 0 0 36 10,-1.2 27,-2.8 -2,-0.8 28,-0.4 0.390 48.6 58.3-127.8 -1.3 18.7 -0.3 13.7 63 19 B L E -EF 72 88D 3 9,-2.3 9,-2.5 25,-0.3 2,-0.5 -0.844 60.3-145.1-128.0 164.5 22.4 -1.1 13.2 64 20 B F E -EF 71 87D 32 23,-2.6 23,-1.9 -2,-0.3 2,-0.8 -0.993 16.5-142.5-129.8 123.6 25.6 -1.0 15.1 65 21 B C E >> -EF 70 86D 0 5,-3.2 5,-1.8 -2,-0.5 4,-1.2 -0.794 10.7-166.3 -88.2 114.9 28.8 -0.0 13.3 66 22 B E T 45S+ 0 0 82 19,-1.6 20,-0.2 -2,-0.8 -1,-0.2 0.804 84.2 61.4 -69.8 -32.7 31.5 -2.2 14.7 67 23 B S T 45S+ 0 0 68 18,-1.4 -1,-0.2 1,-0.2 19,-0.1 0.792 121.7 24.5 -63.7 -28.0 34.3 -0.1 13.2 68 24 B C T 45S- 0 0 29 -3,-0.5 -2,-0.2 17,-0.3 -1,-0.2 0.427 96.9-127.7-115.8 -3.3 33.1 2.8 15.3 69 25 B D T <5 + 0 0 122 -4,-1.2 2,-0.4 1,-0.2 -3,-0.2 0.923 68.4 134.5 50.9 47.2 31.3 1.2 18.2 70 26 B T E < -E 65 0D 14 -5,-1.8 -5,-3.2 -66,-0.1 2,-0.2 -0.981 62.7-120.2-134.0 135.9 28.4 3.4 17.3 71 27 B L E -E 64 0D 14 -68,-0.5 2,-0.3 -2,-0.4 -7,-0.3 -0.535 41.8-176.2 -69.0 139.9 24.7 3.0 16.8 72 28 B T E -E 63 0D 0 -9,-2.5 -9,-2.3 -2,-0.2 -10,-1.2 -0.932 22.9-140.0-139.9 157.9 23.7 3.9 13.3 73 29 B C > - 0 0 0 -2,-0.3 4,-2.4 -12,-0.3 5,-0.2 -0.509 46.6 -89.2-103.5-179.6 20.6 4.2 11.1 74 30 B R H > S+ 0 0 120 -14,-0.4 4,-1.8 1,-0.2 5,-0.2 0.894 127.6 48.8 -60.6 -41.6 20.4 3.1 7.4 75 31 B D H > S+ 0 0 62 2,-0.2 4,-1.6 1,-0.2 5,-0.3 0.907 110.6 50.7 -65.4 -43.2 21.5 6.4 6.1 76 32 B C H 4>S+ 0 0 15 1,-0.2 5,-2.4 2,-0.2 3,-0.3 0.945 111.3 48.8 -57.7 -50.0 24.5 6.6 8.5 77 33 B Q H <5S+ 0 0 11 -4,-2.4 7,-0.2 1,-0.2 -1,-0.2 0.842 114.5 43.2 -64.8 -32.2 25.6 3.1 7.5 78 34 B L H <5S+ 0 0 123 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.707 126.9 26.5 -85.8 -19.0 25.4 3.7 3.7 79 35 B N T ><5S+ 0 0 108 -4,-1.6 3,-2.0 -3,-0.3 -3,-0.2 0.731 129.5 17.9-107.9 -88.3 27.1 7.1 3.9 80 36 B A T 3 5S+ 0 0 82 -5,-0.3 -3,-0.2 1,-0.3 -4,-0.1 0.837 133.3 44.3 -58.7 -31.2 29.5 8.2 6.5 81 37 B H T > -F 63 0D 89 -2,-0.3 3,-0.7 -25,-0.2 -25,-0.3 -0.594 36.6-120.5 -72.6 143.9 21.9 -5.1 12.3 89 45 B L T 3 S+ 0 0 26 -27,-2.8 -1,-0.1 1,-0.3 -26,-0.1 0.930 113.7 53.9 -55.2 -45.6 21.0 -5.1 16.0 90 46 B E T 3 0 0 142 -28,-0.4 -1,-0.3 1,-0.2 -27,-0.1 0.836 360.0 360.0 -59.6 -27.5 18.6 -8.0 15.7 91 47 B D < 0 0 135 -3,-0.7 -1,-0.2 0, 0.0 -2,-0.2 0.748 360.0 360.0 -83.9 360.0 21.5 -9.9 14.0