==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 31-MAY-07 2Z33 . COMPND 2 MOLECULE: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.YAMANE,H.OKAMURA,M.IKEGUCHI,Y.NISHIMURA,A.KIDERA . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7011.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 21.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 27.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 223 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.8 10.6 35.4 42.9 2 2 A A + 0 0 102 2,-0.1 2,-0.1 0, 0.0 0, 0.0 0.587 360.0 103.7-110.7 -16.3 9.1 38.1 40.5 3 3 A V S S- 0 0 106 1,-0.1 2,-0.1 14,-0.0 14,-0.0 -0.425 79.5-109.0 -62.2 136.7 10.7 36.9 37.2 4 4 A E - 0 0 114 -2,-0.1 2,-0.4 1,-0.0 -1,-0.1 -0.334 30.1-149.8 -76.2 155.3 8.0 35.1 35.1 5 5 A E - 0 0 158 -2,-0.1 -1,-0.0 12,-0.0 0, 0.0 -0.990 19.6-104.3-135.3 125.6 8.0 31.3 34.5 6 6 A V - 0 0 64 -2,-0.4 2,-0.5 9,-0.1 9,-0.2 0.051 24.9-138.4 -30.0 137.8 6.8 29.1 31.6 7 7 A I E -A 14 0A 39 7,-3.1 7,-3.0 2,-0.0 2,-0.4 -0.964 22.0-177.5-109.4 123.5 3.5 27.1 31.8 8 8 A E E +A 13 0A 133 -2,-0.5 2,-0.3 5,-0.2 5,-0.2 -0.956 13.3 152.5-127.7 117.3 3.8 23.6 30.3 9 9 A M E > -A 12 0A 33 3,-2.7 3,-2.0 -2,-0.4 -2,-0.0 -0.999 63.0 -9.4-147.6 134.3 0.7 21.3 30.3 10 10 A Q T 3 S- 0 0 124 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.838 128.4 -47.9 47.6 45.5 -0.5 18.4 28.0 11 11 A G T 3 S+ 0 0 45 1,-0.2 13,-2.7 12,-0.1 2,-0.4 0.551 118.1 108.9 77.8 5.9 2.3 18.9 25.4 12 12 A L E < -AB 9 23A 0 -3,-2.0 -3,-2.7 11,-0.2 2,-0.4 -0.966 47.1-170.1-119.1 127.8 1.7 22.7 25.1 13 13 A S E -AB 8 22A 9 9,-3.2 9,-2.9 -2,-0.4 2,-0.4 -0.967 4.2-175.5-124.3 128.8 4.2 25.2 26.5 14 14 A L E -AB 7 21A 0 -7,-3.0 -7,-3.1 -2,-0.4 7,-0.2 -0.981 8.2-162.3-125.3 126.5 3.7 29.0 26.9 15 15 A D E >> - B 0 20A 50 5,-2.6 5,-1.6 -2,-0.4 4,-1.2 -0.930 2.9-165.5-109.9 110.9 6.4 31.4 28.1 16 16 A P T 45S+ 0 0 11 0, 0.0 -1,-0.1 0, 0.0 5,-0.0 0.783 87.1 53.9 -66.5 -28.9 5.0 34.8 29.3 17 17 A T T 45S+ 0 0 83 1,-0.2 -12,-0.0 3,-0.1 -2,-0.0 0.928 118.3 31.5 -72.2 -45.0 8.5 36.5 29.2 18 18 A S T 45S- 0 0 86 2,-0.1 -1,-0.2 0, 0.0 3,-0.1 0.605 101.8-126.2 -89.8 -9.9 9.4 35.6 25.6 19 19 A H T <5 + 0 0 142 -4,-1.2 2,-0.5 1,-0.2 -2,-0.1 0.905 60.5 150.6 61.6 45.0 5.7 35.7 24.3 20 20 A R E < -B 15 0A 118 -5,-1.6 -5,-2.6 9,-0.1 2,-0.4 -0.929 33.0-171.8-123.6 122.2 6.3 32.2 23.0 21 21 A V E +BC 14 28A 4 7,-0.6 7,-2.8 -2,-0.5 2,-0.3 -0.931 13.2 174.9-112.0 129.4 3.8 29.3 22.5 22 22 A M E -BC 13 27A 37 -9,-2.9 -9,-3.2 -2,-0.4 2,-0.5 -0.986 19.6-156.4-135.3 145.5 5.1 25.9 21.5 23 23 A A E > S-BC 12 26A 14 3,-3.0 3,-0.8 -2,-0.3 -11,-0.2 -0.988 86.4 -10.4-123.3 120.3 3.4 22.5 21.0 24 24 A G T 3 S- 0 0 65 -13,-2.7 -1,-0.1 -2,-0.5 -12,-0.1 0.797 129.9 -58.4 61.8 29.6 5.6 19.4 21.4 25 25 A E T 3 S+ 0 0 127 -14,-0.2 -1,-0.2 1,-0.2 -13,-0.1 0.761 118.4 110.1 63.3 34.7 8.7 21.8 21.4 26 26 A E E < S-C 23 0A 143 -3,-0.8 -3,-3.0 58,-0.1 -1,-0.2 -0.999 72.8-108.8-130.5 130.0 7.7 23.2 18.0 27 27 A P E -C 22 0A 55 0, 0.0 2,-0.3 0, 0.0 -5,-0.3 -0.137 23.7-160.2 -68.2 155.6 6.5 26.8 17.9 28 28 A L E -C 21 0A 24 -7,-2.8 -7,-0.6 2,-0.0 2,-0.4 -0.911 15.8-137.2-124.8 155.9 3.0 28.1 17.2 29 29 A E + 0 0 175 -2,-0.3 2,-0.3 51,-0.3 -9,-0.1 -0.946 31.5 144.7-126.8 133.3 2.2 31.7 16.1 30 30 A M - 0 0 49 -2,-0.4 -9,-0.1 -9,-0.0 47,-0.1 -0.995 42.2 -96.0-160.7 158.4 -0.4 34.2 17.2 31 31 A G > - 0 0 35 -2,-0.3 4,-2.3 1,-0.1 5,-0.1 -0.158 44.1-100.9 -72.0 174.6 -1.3 37.8 17.9 32 32 A P H > S+ 0 0 114 0, 0.0 4,-2.2 0, 0.0 5,-0.1 0.809 119.8 50.9 -78.8 -31.0 -1.2 39.5 21.3 33 33 A T H > S+ 0 0 54 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.887 113.5 48.3 -66.6 -39.4 -5.0 39.5 22.1 34 34 A E H > S+ 0 0 22 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.917 111.2 50.1 -64.1 -43.7 -4.9 35.7 21.2 35 35 A F H X S+ 0 0 25 -4,-2.3 4,-2.8 2,-0.2 -2,-0.2 0.922 110.7 49.0 -61.1 -45.3 -1.8 35.2 23.5 36 36 A K H X S+ 0 0 106 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.918 112.0 48.1 -64.5 -41.3 -3.5 37.1 26.4 37 37 A L H X S+ 0 0 0 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.928 113.6 47.9 -62.2 -43.1 -6.7 35.0 26.0 38 38 A L H X S+ 0 0 0 -4,-2.4 4,-3.0 2,-0.2 5,-0.2 0.917 111.1 50.9 -62.6 -42.4 -4.6 31.8 25.9 39 39 A H H X S+ 0 0 51 -4,-2.8 4,-1.5 2,-0.2 -2,-0.2 0.915 111.0 48.8 -60.6 -43.0 -2.6 32.9 29.0 40 40 A F H X S+ 0 0 19 -4,-2.4 4,-0.7 2,-0.2 -2,-0.2 0.938 114.9 44.9 -62.2 -46.0 -5.9 33.6 30.8 41 41 A F H >< S+ 0 0 0 -4,-2.5 3,-0.6 1,-0.2 -2,-0.2 0.924 112.8 49.6 -64.4 -43.3 -7.2 30.1 29.8 42 42 A M H 3< S+ 0 0 6 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.761 111.2 50.0 -72.4 -20.9 -3.9 28.2 30.6 43 43 A T H 3< S+ 0 0 67 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.633 119.8 40.3 -85.0 -12.5 -3.8 29.9 34.1 44 44 A H S << S+ 0 0 68 -4,-0.7 3,-0.4 -3,-0.6 56,-0.3 -0.412 73.0 165.1-133.2 62.8 -7.4 28.9 34.6 45 45 A P + 0 0 53 0, 0.0 56,-0.2 0, 0.0 3,-0.1 -0.495 64.6 30.1 -74.2 149.7 -8.2 25.3 33.3 46 46 A E S S+ 0 0 127 54,-3.0 2,-0.3 1,-0.2 55,-0.1 0.907 94.6 105.2 68.1 48.0 -11.5 23.6 34.5 47 47 A R - 0 0 140 53,-0.5 53,-0.6 -3,-0.4 2,-0.4 -0.962 65.2-125.2-151.5 140.4 -13.6 26.7 34.9 48 48 A V E -D 99 0B 58 -2,-0.3 2,-0.4 51,-0.2 51,-0.2 -0.698 25.5-170.6 -88.8 135.0 -16.5 28.2 32.8 49 49 A Y E -D 98 0B 2 49,-2.8 49,-2.8 -2,-0.4 44,-0.2 -0.989 13.2-141.9-126.3 126.6 -16.2 31.8 31.7 50 50 A S E > -D 97 0B 23 -2,-0.4 4,-2.1 47,-0.3 47,-0.2 -0.364 34.7-104.1 -74.0 164.4 -18.9 33.9 30.1 51 51 A R H > S+ 0 0 36 45,-0.7 4,-2.5 1,-0.2 5,-0.1 0.878 123.4 57.8 -60.5 -32.9 -18.1 36.3 27.2 52 52 A E H > S+ 0 0 131 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.905 105.6 47.8 -59.6 -44.5 -18.5 39.2 29.8 53 53 A Q H > S+ 0 0 64 2,-0.2 4,-2.5 -3,-0.2 5,-0.2 0.925 112.7 49.1 -65.3 -41.9 -15.8 37.6 32.1 54 54 A L H X>S+ 0 0 0 -4,-2.1 4,-2.9 2,-0.2 5,-0.8 0.907 110.8 50.9 -62.4 -41.8 -13.4 37.2 29.1 55 55 A L H <>S+ 0 0 26 -4,-2.5 5,-2.9 3,-0.2 4,-0.3 0.946 112.1 45.8 -60.7 -47.4 -14.1 40.9 28.1 56 56 A N H <5S+ 0 0 80 -4,-2.4 5,-0.4 3,-0.2 -2,-0.2 0.920 122.2 36.8 -64.4 -43.6 -13.3 42.2 31.6 57 57 A H H <5S+ 0 0 104 -4,-2.5 -2,-0.2 -5,-0.2 -3,-0.2 0.936 130.4 23.3 -71.5 -48.3 -10.1 40.1 32.0 58 58 A V T <5S+ 0 0 12 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.1 0.951 133.4 28.8 -94.9 -53.3 -8.6 40.1 28.5 59 59 A W T - 0 0 145 -2,-0.3 3,-1.5 1,-0.1 4,-0.4 -0.469 39.8-114.5 -74.7 157.4 -19.5 43.8 21.1 67 67 A D T >> S+ 0 0 77 1,-0.3 3,-1.2 2,-0.2 4,-0.6 0.816 113.3 65.2 -61.2 -29.3 -19.8 40.4 22.8 68 68 A R H 3> S+ 0 0 153 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.446 78.6 79.4 -88.0 6.0 -19.2 38.6 19.4 69 69 A T H <> S+ 0 0 40 -3,-1.5 4,-2.0 2,-0.2 -1,-0.3 0.859 92.6 55.3 -62.6 -36.4 -15.7 40.1 19.2 70 70 A V H <> S+ 0 0 0 -3,-1.2 4,-2.8 -4,-0.4 -2,-0.2 0.942 102.8 53.8 -61.7 -45.4 -15.0 37.2 21.6 71 71 A D H X S+ 0 0 47 -4,-0.6 4,-2.0 2,-0.2 -1,-0.2 0.891 110.1 46.3 -56.1 -46.2 -16.5 34.6 19.1 72 72 A V H X S+ 0 0 71 -4,-1.3 4,-2.2 2,-0.2 -1,-0.2 0.912 114.0 48.3 -65.0 -42.1 -14.2 35.8 16.2 73 73 A H H X S+ 0 0 21 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.886 108.2 54.5 -68.2 -35.7 -11.1 35.7 18.6 74 74 A I H X S+ 0 0 2 -4,-2.8 4,-2.7 2,-0.2 -2,-0.2 0.915 109.0 49.1 -60.1 -42.3 -12.0 32.2 19.8 75 75 A R H X S+ 0 0 130 -4,-2.0 4,-2.9 2,-0.2 -2,-0.2 0.928 111.3 49.4 -61.4 -44.1 -12.1 31.1 16.1 76 76 A R H X S+ 0 0 133 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.888 112.3 47.9 -61.7 -41.5 -8.6 32.8 15.6 77 77 A L H X S+ 0 0 0 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.927 113.8 46.3 -65.2 -45.5 -7.3 31.0 18.8 78 78 A R H X S+ 0 0 62 -4,-2.7 4,-1.7 2,-0.2 -2,-0.2 0.941 111.7 51.9 -60.6 -44.2 -8.7 27.6 17.6 79 79 A K H < S+ 0 0 125 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.882 111.3 48.9 -58.6 -40.4 -7.3 28.2 14.1 80 80 A A H < S+ 0 0 18 -4,-1.9 -51,-0.3 -5,-0.2 -1,-0.2 0.837 116.4 40.0 -64.7 -38.2 -3.8 29.0 15.7 81 81 A L H <>S+ 0 0 0 -4,-1.8 5,-2.7 -3,-0.2 6,-0.6 0.580 95.7 85.4 -95.1 -9.8 -3.8 25.8 17.9 82 82 A E T ><5S+ 0 0 109 -4,-1.7 3,-1.6 4,-0.2 -1,-0.2 0.903 89.9 44.3 -60.1 -46.0 -5.3 23.5 15.3 83 83 A P T 3 5S+ 0 0 109 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.709 113.0 55.8 -76.6 -14.9 -2.0 22.5 13.4 84 84 A G T 3 5S- 0 0 19 -3,-0.2 -2,-0.2 -4,-0.2 -3,-0.1 0.300 115.1-121.3 -89.2 1.5 -0.5 22.1 16.9 85 85 A G T < 5S+ 0 0 25 -3,-1.6 -3,-0.2 1,-0.1 3,-0.1 0.667 86.5 103.0 74.6 15.2 -3.2 19.6 17.8 86 86 A H > < + 0 0 29 -5,-2.7 3,-1.1 -8,-0.1 4,-0.4 0.327 38.7 99.4-122.1 9.0 -4.5 21.7 20.8 87 87 A D G > S+ 0 0 47 -6,-0.6 3,-1.3 1,-0.2 -5,-0.1 0.842 74.6 69.7 -54.8 -35.4 -7.7 23.4 19.5 88 88 A R G 3 S+ 0 0 158 1,-0.3 -1,-0.2 -7,-0.1 -2,-0.1 0.613 85.3 66.1 -69.8 -13.6 -9.8 20.7 21.3 89 89 A M G < S+ 0 0 10 -3,-1.1 12,-1.2 1,-0.1 2,-1.0 0.827 86.5 78.9 -66.0 -36.3 -8.9 22.0 24.8 90 90 A V E < S+E 100 0B 5 -3,-1.3 10,-0.2 -4,-0.4 2,-0.2 -0.671 74.2 179.8 -80.4 98.1 -10.8 25.2 23.9 91 91 A Q E -E 99 0B 56 8,-2.5 8,-2.4 -2,-1.0 2,-0.4 -0.625 22.1-125.2-114.7 161.1 -14.5 24.1 24.5 92 92 A T E -E 98 0B 74 6,-0.2 2,-0.7 -2,-0.2 6,-0.3 -0.875 7.5-162.8-116.7 131.1 -17.9 25.7 24.2 93 93 A V E >> -E 97 0B 46 4,-2.8 4,-2.3 -2,-0.4 3,-1.8 -0.912 29.9-133.1-110.2 103.0 -20.7 26.0 26.8 94 94 A R T 34 S+ 0 0 239 -2,-0.7 4,-0.0 1,-0.3 -2,-0.0 -0.325 85.6 10.9 -63.1 128.7 -23.9 26.9 24.8 95 95 A G T 34 S+ 0 0 71 1,-0.1 -1,-0.3 -2,-0.1 0, 0.0 0.504 134.4 45.0 82.4 5.6 -26.0 29.8 26.2 96 96 A T T <4 S- 0 0 77 -3,-1.8 -45,-0.7 1,-0.2 2,-0.2 0.481 103.0 -95.7-139.9 -60.2 -23.2 30.8 28.7 97 97 A G E < -DE 50 93B 0 -4,-2.3 -4,-2.8 -47,-0.2 2,-0.3 -0.816 47.9 -42.4 170.2-133.4 -19.6 30.9 27.4 98 98 A Y E -DE 49 92B 9 -49,-2.8 -49,-2.8 -6,-0.3 2,-0.3 -0.871 32.3-160.6-139.2 163.1 -16.4 28.9 27.0 99 99 A R E -DE 48 91B 31 -8,-2.4 -8,-2.5 -2,-0.3 2,-0.4 -0.977 11.0-142.9-146.4 150.3 -14.2 26.6 29.1 100 100 A F E + E 0 90B 0 -53,-0.6 -54,-3.0 -56,-0.3 -53,-0.5 -0.954 27.2 173.2-118.4 139.9 -10.6 25.3 28.9 101 101 A S - 0 0 1 -12,-1.2 -2,-0.0 -2,-0.4 -59,-0.0 -0.999 42.7-130.5-150.5 147.2 -9.7 21.8 29.8 102 102 A T S S- 0 0 72 -2,-0.3 -1,-0.1 -13,-0.0 -13,-0.1 0.854 95.5 -42.5 -62.0 -38.0 -6.7 19.3 29.8 103 103 A R 0 0 184 -14,-0.1 -2,-0.1 -3,-0.1 0, 0.0 0.252 360.0 360.0-153.4 -62.4 -8.9 16.7 28.1 104 104 A F 0 0 197 -58,-0.0 -58,-0.1 0, 0.0 0, 0.0 0.707 360.0 360.0-100.2 360.0 -12.5 16.3 29.4