==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 15-JUN-07 2Z4D . COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN13; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR N.ZHANG,K.J.WALTERS . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7077.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 54.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 29.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A T 0 0 147 0, 0.0 2,-1.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 85.9 12.3 10.7 11.9 2 7 A V - 0 0 69 29,-0.1 29,-0.2 30,-0.1 28,-0.1 -0.547 360.0-171.2 -78.5 86.7 11.8 7.7 9.6 3 8 A I E -A 30 0A 79 -2,-1.7 27,-1.0 27,-1.3 2,-0.4 -0.222 13.0-131.2 -72.1 168.9 9.8 5.5 12.1 4 9 A K E +A 29 0A 90 25,-0.3 25,-0.3 39,-0.1 2,-0.2 -0.957 25.8 173.1-126.1 144.2 9.0 1.8 11.2 5 10 A F E -A 28 0A 127 23,-3.0 23,-1.0 -2,-0.4 2,-0.5 -0.723 30.0-109.9-134.7-174.8 5.7 -0.1 11.4 6 11 A R + 0 0 147 21,-0.2 2,-0.2 -2,-0.2 21,-0.2 -0.953 52.7 120.5-128.2 119.3 4.4 -3.6 10.4 7 12 A A - 0 0 29 -2,-0.5 2,-0.3 19,-0.4 89,-0.2 -0.712 46.5-108.8-150.2-158.6 1.9 -4.1 7.5 8 13 A G - 0 0 2 87,-0.5 87,-1.2 -2,-0.2 17,-0.1 -0.939 13.9-141.1-142.3 165.7 1.5 -6.0 4.2 9 14 A V - 0 0 12 15,-0.5 13,-0.5 -2,-0.3 2,-0.2 0.069 25.2-112.5-103.9-142.3 1.4 -5.2 0.5 10 15 A C E -D 21 0B 17 11,-0.2 83,-0.2 84,-0.1 2,-0.1 -0.719 18.2-151.6-163.7 108.3 -0.7 -6.8 -2.3 11 16 A E E -D 20 0B 80 9,-0.8 9,-0.9 -2,-0.2 2,-0.4 -0.353 15.1-140.7 -77.7 162.2 0.4 -9.0 -5.2 12 17 A Y E -D 19 0B 123 7,-0.2 2,-0.5 -2,-0.1 7,-0.2 -0.959 1.5-144.4-126.5 144.1 -1.5 -9.0 -8.5 13 18 A N E >> -D 18 0B 64 5,-1.8 4,-1.6 -2,-0.4 5,-1.0 -0.912 4.9-164.8-110.1 125.0 -2.2 -12.0 -10.8 14 19 A E T 45S+ 0 0 118 -2,-0.5 -1,-0.1 2,-0.2 0, 0.0 0.782 89.2 63.5 -76.9 -24.7 -2.3 -11.5 -14.6 15 20 A D T 45S+ 0 0 122 1,-0.2 -1,-0.2 3,-0.1 -2,-0.0 0.845 126.6 12.4 -68.6 -30.7 -4.1 -14.8 -15.2 16 21 A S T 45S- 0 0 81 -3,-0.2 -2,-0.2 2,-0.1 -1,-0.2 0.404 96.9-128.4-124.1 -2.2 -7.1 -13.5 -13.2 17 22 A R T <5 + 0 0 199 -4,-1.6 2,-0.3 1,-0.2 -3,-0.2 0.972 60.1 139.4 52.7 58.0 -6.3 -9.8 -13.0 18 23 A L E < -D 13 0B 66 -5,-1.0 -5,-1.8 2,-0.0 2,-0.5 -0.865 51.7-137.1-128.8 164.7 -6.8 -9.7 -9.2 19 24 A C E +D 12 0B 32 -2,-0.3 -7,-0.2 -7,-0.2 -8,-0.1 -0.779 32.2 168.9-124.9 90.0 -5.1 -8.0 -6.2 20 25 A T E -D 11 0B 64 -9,-0.9 -9,-0.8 -2,-0.5 2,-0.1 -0.534 42.8 -86.8 -96.4 167.4 -4.7 -10.4 -3.2 21 26 A P E -D 10 0B 51 0, 0.0 -11,-0.2 0, 0.0 -1,-0.1 -0.415 45.1-115.0 -71.3 144.5 -2.6 -9.9 -0.1 22 27 A I - 0 0 4 -13,-0.5 -13,-0.1 2,-0.1 73,-0.1 -0.618 10.9-134.2 -82.8 140.9 1.0 -11.0 -0.3 23 28 A P S S+ 0 0 64 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.714 86.6 87.0 -66.1 -18.5 2.1 -13.9 2.0 24 29 A V - 0 0 2 1,-0.2 -15,-0.5 27,-0.1 -2,-0.1 -0.632 62.7-162.6 -83.6 138.1 5.2 -11.8 3.0 25 30 A Q + 0 0 59 25,-0.8 -18,-0.3 -2,-0.3 -1,-0.2 0.922 25.5 160.8 -86.2 -49.7 4.7 -9.4 5.9 26 31 A G - 0 0 0 -20,-0.1 -19,-0.4 24,-0.1 2,-0.3 -0.053 37.8-104.8 54.8-166.7 7.7 -7.1 5.4 27 32 A E B -E 46 0C 18 19,-1.8 19,-1.0 -21,-0.2 -21,-0.2 -0.993 17.7-129.7-153.7 159.0 7.4 -3.7 7.2 28 33 A I E -A 5 0A 7 -23,-1.0 -23,-3.0 -2,-0.3 2,-0.5 -0.624 13.4-137.9-106.7 168.7 6.7 0.0 6.5 29 34 A E E -A 4 0A 12 -25,-0.3 15,-1.9 -2,-0.2 -25,-0.3 -0.943 14.0-137.2-130.9 114.1 8.6 3.1 7.5 30 35 A I E -AB 3 43A 25 -27,-1.0 -27,-1.3 -2,-0.5 13,-0.2 -0.506 31.1-177.6 -68.7 127.2 6.8 6.3 8.6 31 36 A K E - B 0 42A 66 11,-1.1 2,-1.2 -2,-0.3 11,-1.2 -0.989 34.3-137.8-133.4 140.9 8.4 9.3 7.0 32 37 A P E > - B 0 41A 31 0, 0.0 4,-1.4 0, 0.0 7,-0.2 -0.334 67.3 -83.1 -87.9 53.0 7.8 13.1 7.3 33 38 A N T 4 - 0 0 12 -2,-1.2 3,-0.3 7,-1.1 8,-0.0 0.187 60.6 -68.1 65.0 164.6 8.2 13.7 3.6 34 39 A E T 4 S- 0 0 137 1,-0.2 -1,-0.2 -3,-0.1 0, 0.0 0.894 130.1 -4.6 -56.3 -38.5 11.6 14.1 2.0 35 40 A E T 4 S- 0 0 143 -3,-0.0 -1,-0.2 0, 0.0 -2,-0.2 -0.044 106.3 -91.5-147.8 38.3 12.0 17.5 3.8 36 41 A E S < S+ 0 0 137 -4,-1.4 -3,-0.2 -3,-0.3 -2,-0.0 0.941 88.1 127.5 51.1 49.9 8.7 18.1 5.6 37 42 A E S S+ 0 0 107 -5,-0.1 -4,-0.1 3,-0.1 -1,-0.1 0.801 80.5 19.8-103.0 -41.3 7.4 20.0 2.6 38 43 A L S S- 0 0 98 2,-0.1 3,-0.1 -6,-0.1 -5,-0.1 0.479 94.3-129.1-106.3 -5.4 4.0 18.3 2.0 39 44 A G + 0 0 38 -7,-0.2 2,-0.6 1,-0.2 -6,-0.1 0.836 52.8 158.4 62.0 27.8 3.7 16.7 5.4 40 45 A F - 0 0 52 -8,-0.1 2,-2.7 1,-0.1 -7,-1.1 -0.741 46.4-132.3 -88.2 120.7 3.0 13.4 3.6 41 46 A W E -B 32 0A 149 -2,-0.6 -1,-0.1 22,-0.4 -12,-0.1 -0.385 27.0-154.8 -70.5 76.8 3.7 10.4 5.9 42 47 A D E -B 31 0A 33 -2,-2.7 -11,-1.1 -11,-1.2 2,-0.8 -0.300 3.0-153.1 -54.0 124.3 5.8 8.6 3.3 43 48 A F E -BC 30 61A 56 18,-2.8 18,-2.6 -13,-0.2 2,-0.6 -0.838 6.0-162.1-107.3 102.8 5.6 4.8 4.2 44 49 A E E - C 0 60A 60 -15,-1.9 16,-0.2 -2,-0.8 2,-0.2 -0.711 9.2-161.8 -85.5 118.8 8.7 3.0 3.0 45 50 A W E + C 0 59A 0 14,-2.7 14,-0.6 -2,-0.6 -17,-0.2 -0.505 15.0 166.4 -93.8 167.1 8.0 -0.8 2.8 46 51 A R B -E 27 0C 76 -19,-1.0 2,-2.4 12,-0.3 -19,-1.8 -0.887 48.0 -99.5-177.5 146.3 10.7 -3.5 2.7 47 52 A P S S+ 0 0 52 0, 0.0 -21,-0.0 0, 0.0 -2,-0.0 -0.436 73.2 125.0 -71.9 76.7 11.3 -7.2 3.1 48 53 A T + 0 0 53 -2,-2.4 2,-0.2 9,-0.1 -3,-0.0 0.274 58.4 65.6-118.3 10.0 12.6 -7.0 6.7 49 54 A E S S- 0 0 47 -3,-0.2 -22,-0.1 -22,-0.1 -25,-0.0 -0.452 104.6 -61.5-116.2-169.1 10.2 -9.5 8.2 50 55 A K - 0 0 129 -2,-0.2 -25,-0.8 -24,-0.1 -24,-0.1 -0.692 56.0-162.8 -82.9 113.1 9.6 -13.2 7.8 51 56 A P - 0 0 63 0, 0.0 4,-0.1 0, 0.0 -27,-0.1 0.042 15.9-135.1 -78.3-167.3 8.6 -13.9 4.2 52 57 A V S S- 0 0 93 2,-0.3 -28,-0.1 -27,-0.0 3,-0.1 -0.196 72.0 -55.0-148.6 49.9 6.9 -17.1 3.0 53 58 A G S S+ 0 0 81 1,-0.1 2,-0.5 -30,-0.0 -29,-0.0 0.539 114.0 103.5 89.4 5.2 8.6 -18.2 -0.3 54 59 A R - 0 0 133 -31,-0.0 2,-0.4 -32,-0.0 -2,-0.3 -0.865 60.0-153.6-124.7 100.9 8.1 -14.8 -1.9 55 60 A E + 0 0 175 -2,-0.5 2,-0.1 -4,-0.1 -31,-0.0 -0.569 25.3 170.2 -73.9 123.0 11.1 -12.5 -2.1 56 61 A L - 0 0 43 -2,-0.4 -1,-0.0 3,-0.0 -30,-0.0 -0.371 17.2-141.7-116.5-162.1 10.0 -8.9 -2.2 57 62 A D - 0 0 109 -2,-0.1 2,-0.1 -11,-0.1 -9,-0.1 -0.945 37.7 -58.8-155.6 175.0 11.7 -5.5 -1.9 58 63 A P - 0 0 72 0, 0.0 2,-0.5 0, 0.0 -12,-0.3 -0.381 47.5-168.0 -63.8 131.3 11.4 -1.9 -0.5 59 64 A I E -C 45 0A 33 -14,-0.6 -14,-2.7 -2,-0.1 2,-0.5 -0.947 17.6-136.5-126.0 113.8 8.3 -0.1 -1.8 60 65 A S E -C 44 0A 77 -2,-0.5 2,-0.3 -16,-0.2 -16,-0.3 -0.529 26.9-166.7 -69.6 118.0 7.9 3.6 -1.2 61 66 A L E -C 43 0A 4 -18,-2.6 -18,-2.8 -2,-0.5 2,-0.3 -0.820 4.3-155.8-107.8 147.4 4.3 4.2 -0.2 62 67 A I - 0 0 56 -2,-0.3 2,-0.4 -20,-0.2 -20,-0.1 -0.863 5.1-154.4-120.0 155.6 2.6 7.6 -0.1 63 68 A L + 0 0 19 -2,-0.3 -22,-0.4 7,-0.0 -21,-0.0 -0.843 27.1 152.3-132.4 99.6 -0.5 8.8 2.0 64 69 A I >> - 0 0 21 -2,-0.4 3,-1.1 -24,-0.1 4,-0.7 -0.903 23.3-173.2-132.4 108.0 -2.5 11.8 0.6 65 70 A P T 34 S+ 0 0 118 0, 0.0 5,-0.1 0, 0.0 -1,-0.1 0.574 92.2 51.5 -73.2 -8.0 -6.2 12.1 1.4 66 71 A G T 34 S+ 0 0 59 3,-0.1 3,-0.1 0, 0.0 -2,-0.0 0.387 125.5 19.1-108.3 2.8 -6.4 15.0 -1.1 67 72 A E T <4 S+ 0 0 108 -3,-1.1 2,-0.4 1,-0.4 18,-0.1 0.513 114.2 52.8-133.1 -68.3 -4.8 13.2 -4.0 68 73 A T S < S- 0 0 11 -4,-0.7 -1,-0.4 16,-0.1 18,-0.3 -0.630 83.3-124.7 -79.4 126.9 -4.7 9.4 -3.9 69 74 A M E -F 85 0D 144 16,-2.9 16,-1.7 -2,-0.4 2,-0.6 -0.476 21.6-126.6 -70.8 137.0 -8.2 7.9 -3.2 70 75 A W E -F 84 0D 117 14,-0.2 14,-0.2 -2,-0.2 -1,-0.1 -0.730 24.8-173.5 -87.6 122.8 -8.3 5.6 -0.2 71 76 A V E +F 83 0D 38 12,-2.7 12,-1.7 -2,-0.6 3,-0.1 -0.769 16.5 162.6-119.0 88.5 -9.8 2.2 -1.0 72 77 A P S S+ 0 0 54 0, 0.0 9,-1.5 0, 0.0 2,-0.4 0.827 75.4 18.4 -72.9 -32.5 -10.2 0.2 2.2 73 78 A I - 0 0 96 7,-0.2 2,-0.2 10,-0.1 3,-0.1 -0.998 58.6-154.3-142.0 138.3 -12.6 -2.3 0.6 74 79 A K - 0 0 133 1,-0.4 3,-0.1 -2,-0.4 -3,-0.0 -0.285 51.2-107.3-104.7 49.3 -13.4 -3.1 -3.1 75 80 A S S S+ 0 0 94 -2,-0.2 -1,-0.4 1,-0.1 0, 0.0 0.052 88.9 61.9 53.3-173.6 -17.0 -4.4 -2.6 76 81 A S S S- 0 0 111 -3,-0.1 2,-0.7 1,-0.1 -1,-0.1 0.010 116.5 -21.0 52.4-168.1 -17.6 -8.1 -2.9 77 82 A K S S+ 0 0 212 -3,-0.1 2,-0.3 -4,-0.0 -1,-0.1 -0.567 85.6 146.2 -72.8 112.5 -15.9 -10.4 -0.3 78 83 A S - 0 0 35 -2,-0.7 -3,-0.1 1,-0.2 -2,-0.0 -0.948 37.2-158.0-151.4 127.6 -12.9 -8.4 1.0 79 84 A G - 0 0 60 -2,-0.3 -1,-0.2 1,-0.1 2,-0.2 0.962 67.8 -53.1 -68.1 -85.3 -11.2 -8.4 4.4 80 85 A R + 0 0 187 -7,-0.0 16,-0.9 2,-0.0 2,-0.6 -0.589 60.2 165.3-162.4 94.1 -9.4 -5.1 4.6 81 86 A I E - G 0 95D 31 -9,-1.5 2,-0.8 14,-0.2 14,-0.3 -0.864 24.4-151.4-117.0 101.3 -6.9 -3.9 2.0 82 87 A F E + G 0 94D 75 -2,-0.6 12,-1.3 12,-0.5 2,-0.4 -0.559 24.5 175.6 -72.2 108.5 -6.0 -0.2 2.2 83 88 A A E -FG 71 93D 0 -12,-1.7 -12,-2.7 -2,-0.8 2,-0.6 -0.947 18.0-157.5-118.6 133.9 -5.1 0.8 -1.4 84 89 A L E -FG 70 92D 5 8,-1.6 8,-1.6 -2,-0.4 2,-0.5 -0.917 11.2-174.8-112.5 117.0 -4.3 4.4 -2.5 85 90 A V E -F 69 0D 30 -16,-1.7 -16,-2.9 -2,-0.6 6,-0.2 -0.914 8.9-179.1-112.5 133.4 -4.7 5.2 -6.2 86 91 A F - 0 0 85 -2,-0.5 -1,-0.2 -18,-0.3 -17,-0.1 0.881 48.4 -94.8 -92.0 -79.6 -3.7 8.6 -7.7 87 92 A S S S+ 0 0 98 -19,-0.1 4,-0.1 0, 0.0 -19,-0.0 0.220 104.3 47.1-172.8 -39.6 -4.6 8.7 -11.4 88 93 A S S S- 0 0 83 2,-0.0 3,-0.0 0, 0.0 -3,-0.0 0.925 124.9 -56.3 -83.6 -81.6 -1.5 7.8 -13.6 89 94 A N S S+ 0 0 136 1,-0.0 2,-0.9 3,-0.0 -4,-0.0 0.215 98.8 110.6-150.8 15.8 0.1 4.6 -12.2 90 95 A E + 0 0 102 2,-0.0 2,-0.7 0, 0.0 -28,-0.1 -0.239 43.0 132.4 -90.5 49.5 0.9 5.3 -8.5 91 96 A R + 0 0 116 -2,-0.9 2,-0.3 -6,-0.2 -6,-0.2 -0.863 28.8 173.7-105.2 111.2 -1.8 2.9 -7.2 92 97 A Y E -G 84 0D 91 -8,-1.6 -8,-1.6 -2,-0.7 2,-0.4 -0.818 18.9-144.9-113.9 155.5 -0.5 0.6 -4.4 93 98 A F E -G 83 0D 37 -2,-0.3 2,-0.3 -83,-0.2 -10,-0.3 -0.943 17.2-178.9-120.7 140.3 -2.5 -1.9 -2.3 94 99 A F E -G 82 0D 24 -12,-1.3 -12,-0.5 -2,-0.4 2,-0.3 -0.941 5.9-170.8-134.7 158.5 -1.8 -2.8 1.4 95 100 A W E G 81 0D 81 -87,-1.2 -87,-0.5 -2,-0.3 -14,-0.2 -0.998 360.0 360.0-149.6 144.0 -3.4 -5.2 4.0 96 101 A L 0 0 141 -16,-0.9 -15,-0.1 -2,-0.3 -1,-0.0 0.013 360.0 360.0-126.6 360.0 -2.9 -5.7 7.7