==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 21-MAR-08 2ZKH . COMPND 2 MOLECULE: MONOCLONAL TN1 FAB LIGHT CHAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.ARAI,T.TAMADA,E.HONJO,Y.MAEDA,R.KUROKI . 419 3 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 18978.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 277 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 9 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 168 40.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 0.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 42 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 34 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 6 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 5 5 2 5 8 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 4 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 L Q 0 0 163 0, 0.0 2,-0.3 0, 0.0 94,-0.1 0.000 360.0 360.0 360.0 119.7 10.7 -29.2 -3.8 2 2 L V - 0 0 21 92,-0.4 2,-0.5 24,-0.1 87,-0.1 -0.479 360.0-145.0 -66.5 124.7 11.7 -27.6 -0.4 3 3 L V - 0 0 84 -2,-0.3 23,-1.8 93,-0.1 2,-0.6 -0.840 9.1-156.3 -95.3 126.0 9.0 -25.4 0.9 4 4 L L E -A 25 0A 9 -2,-0.5 2,-0.6 93,-0.4 95,-0.6 -0.902 6.1-167.0-104.5 119.1 10.2 -22.3 2.8 5 5 L T E -A 24 0A 80 19,-3.2 19,-2.7 -2,-0.6 2,-0.3 -0.929 7.0-157.8-109.4 118.7 7.8 -20.8 5.3 6 6 L Q E -A 23 0A 15 -2,-0.6 17,-0.2 17,-0.2 93,-0.0 -0.724 14.2-124.5 -96.1 141.7 8.7 -17.3 6.6 7 7 L S E S+A 22 0A 60 15,-2.4 15,-3.2 -2,-0.3 2,-0.1 -0.994 83.5 23.5-134.5 140.3 7.4 -15.9 9.8 8 8 L P - 0 0 47 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.749 65.5-157.2 -75.5 169.8 6.0 -13.4 10.4 9 9 L G S S+ 0 0 51 1,-0.3 93,-2.3 92,-0.2 2,-0.3 0.851 83.0 3.0 -71.4 -34.2 4.4 -12.6 7.0 10 10 L I E S+d 102 0B 78 91,-0.2 -1,-0.3 74,-0.0 2,-0.3 -0.993 70.2 157.0-154.9 145.4 4.2 -9.0 8.1 11 11 L M E -d 103 0B 46 91,-2.0 93,-3.1 -2,-0.3 2,-0.3 -0.972 24.9-136.5-161.5 160.2 5.3 -6.9 11.0 12 12 L S E -d 104 0B 41 -2,-0.3 2,-0.3 91,-0.2 93,-0.2 -0.932 20.4-179.6-124.5 151.8 6.1 -3.3 11.9 13 13 L A E -d 105 0B 0 91,-2.0 93,-1.7 -2,-0.3 6,-0.1 -0.988 24.7-124.3-146.2 155.6 8.9 -1.9 14.1 14 14 L S > - 0 0 40 -2,-0.3 3,-2.3 91,-0.2 63,-0.3 -0.792 47.3 -90.2 -94.7 141.6 10.2 1.4 15.4 15 15 L P T 3 S+ 0 0 72 0, 0.0 63,-0.2 0, 0.0 3,-0.1 -0.209 116.7 35.4 -47.7 139.3 13.8 2.3 14.7 16 16 L G T 3 S+ 0 0 27 61,-2.6 2,-0.2 1,-0.3 62,-0.1 0.179 92.8 120.0 94.7 -15.6 16.1 1.1 17.5 17 17 L E < - 0 0 73 -3,-2.3 60,-2.9 60,-0.1 -1,-0.3 -0.537 67.8-115.5 -84.6 148.4 14.0 -2.1 18.0 18 18 L K - 0 0 141 58,-0.2 2,-0.4 -2,-0.2 57,-0.2 -0.643 31.8-164.6 -78.4 138.9 15.3 -5.6 17.6 19 19 L V E - B 0 74A 2 55,-2.5 55,-3.5 -2,-0.3 2,-0.4 -0.997 9.4-176.7-129.7 128.0 13.7 -7.5 14.7 20 20 L T E - B 0 73A 61 -2,-0.4 2,-0.4 53,-0.2 53,-0.2 -0.994 1.9-176.9-127.0 123.7 13.9 -11.3 14.1 21 21 L I E - B 0 72A 5 51,-3.1 51,-2.9 -2,-0.4 2,-0.3 -0.958 12.4-151.7-119.8 141.2 12.4 -13.0 11.1 22 22 L T E -AB 7 71A 57 -15,-3.2 -15,-2.4 -2,-0.4 2,-0.4 -0.813 11.0-159.6-118.5 152.6 12.5 -16.8 10.6 23 23 L a E -AB 6 70A 1 47,-3.0 47,-2.9 -2,-0.3 2,-0.5 -1.000 9.7-164.6-128.3 126.0 12.5 -19.2 7.7 24 24 L S E -AB 5 69A 56 -19,-2.7 -19,-3.2 -2,-0.4 2,-0.3 -0.975 8.7-150.9-114.7 125.5 11.3 -22.8 8.2 25 25 L A E -A 4 0A 5 43,-2.7 -21,-0.2 -2,-0.5 3,-0.1 -0.736 17.1-135.7 -95.1 143.1 12.2 -25.4 5.5 26 26 L S S S+ 0 0 77 -23,-1.8 2,-0.3 -2,-0.3 -1,-0.1 0.800 96.4 16.5 -65.6 -29.3 10.0 -28.5 4.8 27 27 L S S S- 0 0 60 -24,-0.2 -1,-0.1 40,-0.1 -25,-0.0 -0.966 103.5 -81.9-139.9 158.1 13.2 -30.5 4.7 28 28 L S - 0 0 86 -2,-0.3 2,-0.3 -3,-0.1 40,-0.2 -0.210 42.6-167.9 -65.8 147.0 16.7 -29.8 5.9 29 29 L V - 0 0 9 38,-2.1 38,-0.4 1,-0.1 3,-0.1 -0.930 26.6-129.4-131.3 155.3 19.0 -27.6 3.7 30 30 L S S S+ 0 0 85 -2,-0.3 2,-0.3 1,-0.2 37,-0.1 0.863 87.8 6.7 -75.1 -37.5 22.8 -27.0 4.1 31 31 L Y - 0 0 121 35,-0.1 59,-0.5 19,-0.1 2,-0.4 -0.987 61.8-141.1-143.6 150.6 22.6 -23.2 3.9 32 32 L M - 0 0 0 -2,-0.3 18,-3.1 57,-0.1 2,-0.3 -0.905 14.6-160.2-111.0 146.7 20.0 -20.4 3.7 33 33 L Y E -E 88 0B 29 55,-2.6 55,-1.9 -2,-0.4 2,-0.4 -0.921 6.1-153.3-121.5 149.4 20.3 -17.3 1.6 34 34 L W E -EF 87 47B 0 13,-2.7 12,-3.3 -2,-0.3 13,-2.0 -0.965 7.0-168.1-130.2 144.2 18.4 -14.0 2.1 35 35 L F E -EF 86 45B 0 51,-2.7 51,-2.5 -2,-0.4 2,-0.4 -0.960 10.8-145.8-130.6 143.3 17.4 -11.2 -0.3 36 36 L Q E -EF 85 44B 7 8,-2.7 8,-2.6 -2,-0.3 2,-0.4 -0.909 18.3-178.7-108.2 139.9 16.0 -7.7 0.3 37 37 L Q E -E 84 0B 19 47,-2.5 47,-2.7 -2,-0.4 5,-0.1 -0.996 10.6-168.0-138.6 136.2 13.5 -6.1 -2.0 38 38 L K > - 0 0 69 -2,-0.4 3,-1.9 4,-0.3 45,-0.1 -0.868 46.7 -80.0-115.1 151.7 11.9 -2.7 -1.9 39 39 L P T 3 S+ 0 0 101 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.198 114.7 16.2 -55.9 138.0 8.9 -1.8 -4.1 40 40 L G T 3 S+ 0 0 88 1,-0.2 2,-0.3 -3,-0.0 -3,-0.0 0.493 112.6 84.2 80.2 3.7 9.8 -1.0 -7.7 41 41 L T S < S- 0 0 76 -3,-1.9 -1,-0.2 3,-0.0 3,-0.1 -0.893 79.9 -93.6-132.8 169.2 13.3 -2.5 -7.6 42 42 L S - 0 0 18 -2,-0.3 -4,-0.3 1,-0.1 277,-0.1 -0.358 48.3 -91.8 -73.6 155.8 15.0 -5.9 -8.0 43 43 L P - 0 0 2 0, 0.0 2,-0.4 0, 0.0 -6,-0.2 -0.332 39.7-149.2 -59.8 148.9 15.9 -8.2 -5.1 44 44 L K E -F 36 0B 68 -8,-2.6 -8,-2.7 -3,-0.1 272,-0.1 -0.993 21.6-111.0-122.9 132.7 19.3 -7.7 -3.7 45 45 L L E +F 35 0B 19 270,-0.4 -10,-0.3 -2,-0.4 3,-0.1 -0.383 43.0 168.8 -56.0 132.2 21.4 -10.5 -2.2 46 46 L W E + 0 0 28 -12,-3.3 8,-2.5 1,-0.4 2,-0.4 0.717 61.5 12.7-117.5 -46.5 21.5 -9.7 1.5 47 47 L I E -FG 34 53B 0 -13,-2.0 -13,-2.7 6,-0.2 -1,-0.4 -1.000 65.4-168.3-137.0 135.7 22.9 -12.7 3.2 48 48 L Y E > + G 0 52B 98 4,-2.9 4,-2.2 -2,-0.4 3,-0.4 -0.935 67.2 14.0-127.3 152.7 24.7 -15.8 1.7 49 49 L S T 4 S- 0 0 38 -2,-0.3 2,-2.0 1,-0.2 -1,-0.2 0.906 122.1 -71.9 49.3 48.5 25.7 -19.2 3.1 50 50 L T T 4 S+ 0 0 15 -18,-3.1 -1,-0.2 1,-0.2 21,-0.1 -0.254 128.9 26.8 76.0 -47.6 23.5 -18.6 6.1 51 51 L S T 4 S+ 0 0 72 -2,-2.0 2,-0.5 -3,-0.4 12,-0.3 0.372 86.0 109.4-135.8 1.1 25.6 -16.0 7.9 52 52 L N E < -G 48 0B 67 -4,-2.2 -4,-2.9 10,-0.1 2,-0.3 -0.763 59.2-136.3 -91.9 125.1 27.6 -14.0 5.5 53 53 L L E -G 47 0B 57 -2,-0.5 -6,-0.2 -6,-0.2 3,-0.1 -0.611 20.3-125.5 -76.1 130.8 26.6 -10.4 4.8 54 54 L A > - 0 0 9 -8,-2.5 3,-1.9 -2,-0.3 -1,-0.1 -0.288 47.6 -71.7 -65.2 160.2 26.7 -9.3 1.2 55 55 L S T 3 S+ 0 0 132 1,-0.2 -1,-0.2 -2,-0.0 -10,-0.0 -0.284 122.3 18.8 -55.2 134.9 28.8 -6.2 0.3 56 56 L G T 3 S+ 0 0 78 1,-0.3 -1,-0.2 -3,-0.1 -2,-0.1 0.236 88.6 130.1 87.4 -14.2 27.2 -3.0 1.6 57 57 L V < - 0 0 15 -3,-1.9 -1,-0.3 -11,-0.1 -4,-0.1 -0.603 60.1-120.4 -76.5 125.0 24.9 -4.8 4.2 58 58 L P > - 0 0 32 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 -0.270 17.7-112.1 -71.6 157.9 25.3 -3.1 7.6 59 59 L A T 3 S+ 0 0 96 1,-0.3 16,-0.1 15,-0.0 -2,-0.1 0.611 104.9 82.4 -64.3 -16.7 26.5 -5.0 10.7 60 60 L R T 3 S+ 0 0 38 14,-0.1 15,-2.8 16,-0.1 -1,-0.3 0.744 81.2 81.6 -53.5 -33.5 23.0 -4.7 12.4 61 61 L F E < +C 74 0A 5 -3,-1.8 2,-0.3 13,-0.2 13,-0.2 -0.614 57.8 178.2 -82.1 141.2 22.0 -7.7 10.3 62 62 L R E -C 73 0A 134 11,-1.9 11,-2.7 -2,-0.3 2,-0.4 -0.972 13.1-157.0-143.3 123.6 22.9 -11.3 11.3 63 63 L G E +C 72 0A 5 -2,-0.3 2,-0.3 -12,-0.3 9,-0.2 -0.822 26.8 152.9 -95.8 142.1 22.0 -14.5 9.5 64 64 L S E +C 71 0A 32 7,-2.1 7,-2.5 -2,-0.4 2,-0.2 -0.946 8.1 97.2-152.4 174.1 21.9 -17.8 11.5 65 65 L G E -C 70 0A 38 -2,-0.3 2,-0.3 5,-0.3 5,-0.3 -0.555 35.1-140.5 128.6 172.6 20.3 -21.2 11.6 66 66 L S E > -C 69 0A 97 3,-2.0 3,-2.3 -2,-0.2 2,-0.5 -0.977 61.8 -1.3-161.6 157.2 20.8 -24.8 10.7 67 67 L G T 3 S- 0 0 26 -38,-0.4 -38,-2.1 -2,-0.3 -40,-0.1 -0.409 131.2 -15.4 64.6-111.4 18.8 -27.8 9.3 68 68 L T T 3 S+ 0 0 59 -2,-0.5 -43,-2.7 -40,-0.2 2,-0.5 0.381 124.5 74.6-104.8 2.5 15.2 -26.6 8.8 69 69 L S E < +BC 24 66A 71 -3,-2.3 -3,-2.0 -45,-0.2 2,-0.3 -0.939 51.3 162.7-130.6 114.4 15.3 -23.4 10.9 70 70 L Y E -BC 23 65A 3 -47,-2.9 -47,-3.0 -2,-0.5 2,-0.3 -0.878 13.7-161.5-129.7 158.2 17.0 -20.2 9.9 71 71 L S E -BC 22 64A 26 -7,-2.5 -7,-2.1 -2,-0.3 2,-0.4 -0.974 16.1-153.1-140.4 150.6 16.7 -16.5 11.0 72 72 L L E -BC 21 63A 2 -51,-2.9 -51,-3.1 -2,-0.3 2,-0.4 -0.999 25.6-168.6-120.2 123.6 17.5 -13.0 9.9 73 73 L T E -BC 20 62A 7 -11,-2.7 -11,-1.9 -2,-0.4 2,-0.6 -0.937 17.7-162.2-118.1 131.6 18.1 -10.7 12.9 74 74 L I E -BC 19 61A 4 -55,-3.5 -55,-2.5 -2,-0.4 3,-0.3 -0.975 9.6-158.3-107.2 117.9 18.4 -6.9 13.0 75 75 L S S S+ 0 0 71 -15,-2.8 2,-0.3 -2,-0.6 -1,-0.1 0.906 84.9 0.4 -59.1 -44.3 20.0 -5.9 16.2 76 76 L R S S- 0 0 155 -58,-0.1 -1,-0.3 -3,-0.1 -58,-0.2 -0.902 87.9-131.3-151.1 107.7 18.6 -2.4 16.1 77 77 L M - 0 0 0 -60,-2.9 -61,-2.6 -3,-0.3 2,-0.3 -0.250 13.9-155.7 -71.9 150.8 16.4 -1.5 13.1 78 78 L E > - 0 0 83 -63,-0.2 3,-2.2 -62,-0.1 4,-0.2 -0.888 30.7-113.7-117.9 154.0 16.8 1.6 11.0 79 79 L A G > S+ 0 0 57 -2,-0.3 3,-2.0 1,-0.3 -1,-0.1 0.874 116.2 63.3 -56.3 -38.2 14.0 3.1 8.9 80 80 L E G 3 S+ 0 0 119 1,-0.3 -1,-0.3 -3,-0.0 -3,-0.0 0.611 88.4 71.7 -60.4 -14.4 15.9 2.2 5.7 81 81 L D G < + 0 0 2 -3,-2.2 2,-0.4 2,-0.0 -1,-0.3 0.542 65.6 115.9 -79.5 -11.2 15.5 -1.5 6.7 82 82 L A < + 0 0 26 -3,-2.0 2,-0.3 -4,-0.2 22,-0.2 -0.507 48.7 102.5 -61.0 116.9 11.7 -1.4 5.9 83 83 L A E S- H 0 103B 7 20,-0.8 20,-3.1 -2,-0.4 2,-0.5 -0.953 76.7 -80.5-174.6 177.8 11.5 -3.8 3.0 84 84 L T E -EH 37 102B 27 -47,-2.7 -47,-2.5 -2,-0.3 2,-0.5 -0.916 39.6-157.5-101.4 135.0 10.5 -7.4 2.1 85 85 L Y E -EH 36 101B 2 16,-2.8 16,-2.0 -2,-0.5 2,-0.4 -0.961 6.3-166.5-112.8 131.0 13.0 -10.1 3.0 86 86 L Y E -E 35 0B 24 -51,-2.5 -51,-2.7 -2,-0.5 2,-0.2 -0.946 9.4-147.9-115.8 135.1 13.0 -13.4 1.2 87 87 L a E -E 34 0B 0 -2,-0.4 11,-2.1 -53,-0.2 2,-0.3 -0.586 18.8-170.5 -89.2 161.3 14.8 -16.6 2.2 88 88 L Q E -EI 33 97B 0 -55,-1.9 -55,-2.6 9,-0.3 2,-0.3 -0.967 10.9-154.1-154.5 140.8 16.0 -18.9 -0.5 89 89 L Q E - 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