==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-MAR-90 2ZNF . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR M.F.SUMMERS,T.L.SOUTH,B.KIM,D.R.HARE . 18 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2063.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A V 0 0 171 0, 0.0 10,-0.1 0, 0.0 8,-0.1 0.000 360.0 360.0 360.0 109.4 -1.3 -5.6 4.8 2 2 A K - 0 0 137 6,-0.1 2,-0.5 8,-0.0 11,-0.2 0.275 360.0 -67.5 85.3 146.1 0.7 -2.5 4.3 3 3 A C > - 0 0 2 5,-1.4 4,-1.9 1,-0.1 9,-0.1 -0.439 34.8-152.8 -77.4 108.2 1.6 -0.9 1.0 4 4 A F T 4 S+ 0 0 200 -2,-0.5 -1,-0.1 1,-0.2 8,-0.1 0.829 92.9 35.4 -39.9 -48.5 4.0 -3.0 -1.1 5 5 A N T 4 S+ 0 0 127 1,-0.1 -1,-0.2 3,-0.1 7,-0.0 0.974 126.8 27.1 -72.3 -64.1 5.4 0.1 -2.9 6 6 A C T 4 S- 0 0 52 2,-0.1 -2,-0.2 1,-0.1 -1,-0.1 0.401 87.1-127.5-106.0 -4.4 5.4 2.9 -0.4 7 7 A G < + 0 0 53 -4,-1.9 -3,-0.1 1,-0.2 -1,-0.1 -0.055 60.3 137.3 92.0 -30.6 5.8 1.4 3.0 8 8 A K > - 0 0 126 -6,-0.1 -5,-1.4 1,-0.1 2,-1.1 -0.194 57.7-124.9 -76.5 138.0 2.8 3.3 4.5 9 9 A E T 3 S+ 0 0 131 1,-0.2 -1,-0.1 -7,-0.2 3,-0.1 -0.605 86.9 60.3 -91.1 89.6 0.3 1.6 6.7 10 10 A G T 3 S+ 0 0 69 -2,-1.1 2,-0.2 1,-0.3 -1,-0.2 0.167 92.1 20.1-168.7 -71.7 -3.0 2.1 5.0 11 11 A H < - 0 0 71 -3,-0.5 -1,-0.3 -10,-0.1 2,-0.1 -0.760 69.7 -90.2-139.9 160.0 -3.6 0.8 1.6 12 12 A I - 0 0 136 -2,-0.2 3,-0.5 -9,-0.1 -9,-0.1 -0.418 35.1-121.8 -81.2 158.1 -2.6 -1.6 -1.1 13 13 A A S > S+ 0 0 30 1,-0.2 3,-1.2 -11,-0.2 -1,-0.1 0.741 89.6 84.3 -66.2 -39.5 -0.1 -0.7 -3.8 14 14 A R T 3 S+ 0 0 221 1,-0.3 -1,-0.2 -9,-0.0 -11,-0.0 0.716 115.2 6.9 -66.7 -29.2 -2.0 -1.2 -6.9 15 15 A N T 3 S+ 0 0 153 -3,-0.5 -1,-0.3 2,-0.0 -2,-0.2 -0.032 88.9 163.9-141.3 28.8 -3.5 2.3 -7.0 16 16 A C < - 0 0 23 -3,-1.2 2,-0.4 1,-0.1 -3,-0.1 -0.010 45.8-120.4 -27.7 145.2 -1.7 3.8 -4.1 17 17 A R 0 0 230 1,-0.1 -1,-0.1 0, 0.0 -4,-0.0 -0.327 360.0 360.0-104.0 46.5 -2.0 7.6 -4.0 18 18 A A 0 0 131 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.1 -0.585 360.0 360.0-105.4 360.0 1.8 8.2 -4.1