UserInterface 0 0 1 1 1 1
#InitAll
#ReadDg hr41_c2.cor
#ReadPdb hr41_c2.pdb
#ReadPdb hr41_mol.pdb
#SelectRes ':73-78'
#RemoveRes
SelectAtom '@Q*'
RemoveAtom
SelectAtom 'bb & :12-60'
Fit to_first 'selected'
SelectBond ''
StyleBond invisible
SelectBond 'bb & :11-67'
StyleBond line
MeanMol "mean" avg_disp mean_only
SelectMol 'name="mean"'
FirstMol
DefPropMol 'mean' 'name="mean"'
SelectMol ''
CalcRmsd fit_pairs '12..60' 'bb' 'heavy' '' 'mean' 'bb heavy heavysc' 'bb' 'bb heavy heavysc'
SelectMol 'name="mean"'
RemoveMol
SelectAtom 'bb & :14-24 :31-41 :45-58'
Fit to_first 'selected'
MeanMol "mean" avg_disp mean_only
SelectMol 'name="mean"'
FirstMol
DefPropMol 'mean' 'name="mean"'
SelectMol ''
CalcRmsd fit_pairs '14..24, 31..41, 45..58' 'bb' 'heavy' '' 'mean' 'bb heavy heavysc' 'bb' 'bb heavy heavysc'
SelectAtom 'ca & mol.num=1 '
LabelAtom "N"
ColorAtom 1 0 0
SelectBond 'mol.num=1'
ColorBond 1 0 0 
SelectAtom '@Z* | @SG  & :43 :46 :69 :61 :80 :83 | @ND1 & :63 :66'
StyleAtom sphere
RadiusAtom 0.7

#SelectMol 'name="mean"'
#RemoveMol
#SelectAtom 'heavy & :9 :10 :11 :13 :14 :15 :16 :18 :20 :22 :27 :28 :29 :32 :37 :38 :39 :40 :43 :48 :53 :58 :63 :65 :82 :86 :87 :89 :91 :92 :93 :94 :95 :97 :98 :102 :115 :124 :125 :129 :130 :135 :136 :137 :139 :140 :142 :144 :145 :146 :147 :148 :150 :151 :153 :154 :159'
#Fit to_first 'selected'
#MeanMol "mean" avg_disp mean_only
#SelectMol 'name="mean"'
#FirstMol
#DefPropMol 'mean' 'name="mean"'
#SelectMol ''
#CalcRmsd as_is '9, 10, 11, 13, 14, 15, 16, 18, 20, 22, 27, 28, 29, 32, 37, 38, 39, 40, 43, 48, 53, 58, 63, 65, 82, 86, 87, 89, 91, 92, 93, 94, 95, 97, 98, 102, 115, 124, 125, 129, 130, 135, 136, 137, 139, 140, 142, 144, 145, 146, 147, 148, 150, 151, 153, 154, 159' 'bb' 'heavy' '' 'mean' 'bb heavy heavysc' 'bb' 'bb heavy heavysc'
#SelectAtom 'ca & mol.num=1 '
#LabelAtom "N"
#ColorAtom 1 0 0
#SelectBond 'mol.num=1'
#ColorBond 1 0 0