data_17514 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; Backbone 1H, 13C, and 15N Chemical Shift Assignments for Leucine Zipper c-Jun. ; _BMRB_accession_number 17514 _BMRB_flat_file_name bmr17514.str _Entry_type original _Submission_date 2011-03-07 _Accession_date 2011-03-07 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Nikolaev Yaroslav . . 2 Pervushin Konstantin . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 40 "13C chemical shifts" 78 "15N chemical shifts" 40 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2012-08-07 original author . stop_ loop_ _Related_BMRB_accession_number _Relationship 3394 'Jun leucine zipper domain' stop_ _Original_release_date 2012-08-07 save_ ############################# # Citation for this entry # ############################# save_jbc _Saveframe_category entry_citation _Citation_full . _Citation_title 'Structural basis of RNA binding by leucine zipper GCN4' _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID 22374868 loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Nikolaev Yaroslav . . 2 Pervushin Konstantin . . stop_ _Journal_abbreviation 'Protein Sci.' _Journal_volume 21 _Journal_issue 5 _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 667 _Page_last 676 _Year 2012 _Details . loop_ _Keyword bzip catalysis 'coiled coil' 'leucine zipper' nmr ribonuclease stop_ save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name 'LZ-cJun dimer' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label 'LZ-cJun, 1' $LZ-cJun 'LZ-cJun, 2' $LZ-cJun stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state ? _System_paramagnetic no _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_LZ-cJun _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common LZ-cJun _Molecular_mass . _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 42 _Mol_residue_sequence ; GLERIARLEEKVKTLKAQNS ELASTANMLREQVAQLKQKV MN ; loop_ _Residue_seq_code _Residue_author_seq_code _Residue_label 1 0 GLY 2 1 LEU 3 2 GLU 4 3 ARG 5 4 ILE 6 5 ALA 7 6 ARG 8 7 LEU 9 8 GLU 10 9 GLU 11 10 LYS 12 11 VAL 13 12 LYS 14 13 THR 15 14 LEU 16 15 LYS 17 16 ALA 18 17 GLN 19 18 ASN 20 19 SER 21 20 GLU 22 21 LEU 23 22 ALA 24 23 SER 25 24 THR 26 25 ALA 27 26 ASN 28 27 MET 29 28 LEU 30 29 ARG 31 30 GLU 32 31 GLN 33 32 VAL 34 33 ALA 35 34 GLN 36 35 LEU 37 36 LYS 38 37 GLN 39 38 LYS 40 39 VAL 41 40 MET 42 41 ASN stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-10-14 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value BMRB 3394 "Jun leucine zipper domain" 92.86 44 100.00 100.00 3.79e-16 PDB 1A02 "Structure Of The Dna Binding Domains Of Nfat, Fos And Jun Bound To Dna" 83.33 56 100.00 100.00 4.85e-13 PDB 1FOS "Two Human C-Fos:c-Jun:dna Complexes" 97.62 62 100.00 100.00 1.83e-17 PDB 1JNM "Crystal Structure Of The JunCRE COMPLEX" 97.62 62 100.00 100.00 1.83e-17 PDB 1JUN "Nmr Study Of C-Jun Homodimer" 92.86 44 100.00 100.00 4.36e-16 PDB 1S9K "Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2 Arre1 Site" 83.33 52 100.00 100.00 5.16e-13 PDB 1T2K "Structure Of The Dna Binding Domains Of Irf3, Atf-2 And Jun Bound To Dna" 97.62 62 100.00 100.00 1.91e-17 PDB 2H7H "Crystal Structure Of The Jun Bzip Homodimer Complexed With Ap-1 Dna" 97.62 62 100.00 100.00 1.83e-17 DBJ BAD98539 "c-jun [Alligator mississippiensis]" 97.62 320 100.00 100.00 1.04e-16 DBJ BAD98540 "c-jun [Pseudemys nelsoni]" 97.62 314 100.00 100.00 1.18e-16 DBJ BAD98541 "c-jun [Crocodylus niloticus]" 97.62 319 100.00 100.00 7.38e-17 DBJ BAE20944 "unnamed protein product [Mus musculus]" 97.62 334 100.00 100.00 1.23e-16 DBJ BAE22389 "unnamed protein product [Mus musculus]" 97.62 334 100.00 100.00 1.27e-16 EMBL CAA31236 "unnamed protein product [Mus musculus]" 97.62 334 100.00 100.00 1.27e-16 EMBL CAA31252 "unnamed protein product [Mus musculus]" 97.62 334 100.00 100.00 1.27e-16 EMBL CAA33553 "unnamed protein product [Coturnix coturnix]" 97.62 313 100.00 100.00 1.23e-16 EMBL CAA35041 "unnamed protein product [Rattus sp.]" 97.62 334 100.00 100.00 1.27e-16 EMBL CAA35084 "unnamed protein product [Rattus norvegicus]" 97.62 334 100.00 100.00 1.27e-16 GB AAA37419 "c-jun protein [Mus musculus]" 97.62 334 100.00 100.00 1.27e-16 GB AAA42416 "jun oncogene, partial [Avian sarcoma virus]" 97.62 340 100.00 100.00 8.87e-17 GB AAA48927 "jun protein [Gallus gallus]" 97.62 310 100.00 100.00 1.13e-16 GB AAA49537 "immediate-early protein [Serinus canaria]" 97.62 314 100.00 100.00 1.05e-16 GB AAA59197 "JUN [Homo sapiens]" 97.62 331 100.00 100.00 1.18e-16 PRF 1404381A "c-jun oncogene" 97.62 330 100.00 100.00 1.12e-16 PRF 1411298A "c-jun gene" 97.62 331 100.00 100.00 1.22e-16 PRF 1411300A "oncogene JUN/AP1" 97.62 334 100.00 100.00 1.27e-16 PRF 2107314A "c-jun gene [Serinus canaria]" 97.62 314 100.00 100.00 1.05e-16 REF NP_001026460 "transcription factor AP-1 [Gallus gallus]" 97.62 310 100.00 100.00 1.13e-16 REF NP_001071295 "transcription factor AP-1 [Bos taurus]" 97.62 303 100.00 100.00 1.25e-16 REF NP_001185876 "transcription factor AP-1 [Oryctolagus cuniculus]" 97.62 337 100.00 100.00 1.34e-16 REF NP_001252779 "transcription factor AP-1 [Macaca mulatta]" 97.62 334 100.00 100.00 1.21e-16 REF NP_001274537 "jun proto-oncogene [Alligator mississippiensis]" 97.62 320 100.00 100.00 1.04e-16 SP O77627 "RecName: Full=Transcription factor AP-1; AltName: Full=Activator protein 1; Short=AP1; AltName: Full=Proto-oncogene c-Jun; AltN" 97.62 335 100.00 100.00 1.34e-16 SP P05411 "RecName: Full=Viral jun-transforming protein; Short=v-Jun" 97.62 287 100.00 100.00 9.90e-17 SP P05412 "RecName: Full=Transcription factor AP-1; AltName: Full=Activator protein 1; Short=AP1; AltName: Full=Proto-oncogene c-Jun; AltN" 97.62 331 100.00 100.00 1.18e-16 SP P05627 "RecName: Full=Transcription factor AP-1; AltName: Full=AH119; AltName: Full=Activator protein 1; Short=AP1; AltName: Full=Proto" 97.62 334 100.00 100.00 1.27e-16 SP P12981 "RecName: Full=Transcription factor AP-1; AltName: Full=Proto-oncogene c-Jun" 97.62 313 100.00 100.00 1.23e-16 TPG DAA31168 "TPA: transcription factor AP-1 [Bos taurus]" 97.62 303 100.00 100.00 1.25e-16 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $LZ-cJun human 9606 Eukaryota Metazoa Homo sapiens stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name _Details $LZ-cJun 'recombinant technology' 'Escherichia coli' Escherichia coli . pQE30 'Expressed as a fusion, later cleaved with enterokinase.' stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_lzjun_NC _Saveframe_category sample _Sample_type solution _Details . loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $LZ-cJun 0.5 mM '[U-13C; U-15N]' KCl 85 mM 'natural abundance' stop_ save_ ############################ # Computer software used # ############################ save_CARA _Saveframe_category software _Name CARA _Version . loop_ _Vendor _Address _Electronic_address 'Keller and Wuthrich' . . stop_ loop_ _Task 'chemical shift assignment' 'data analysis' 'peak picking' stop_ _Details . save_ save_TOPSPIN _Saveframe_category software _Name TOPSPIN _Version . loop_ _Vendor _Address _Electronic_address 'Bruker Biospin' . . stop_ loop_ _Task collection stop_ _Details . save_ save_NMRPipe _Saveframe_category software _Name NMRPipe _Version . loop_ _Vendor _Address _Electronic_address 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' . . stop_ loop_ _Task processing stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model AMX _Field_strength 800 _Details Cryoprobe save_ ############################# # NMR applied experiments # ############################# save_3D_CBCA(CO)NH_1 _Saveframe_category NMR_applied_experiment _Experiment_name '3D CBCA(CO)NH' _Sample_label $lzjun_NC save_ save_3D_1H-15N_NOESY_2 _Saveframe_category NMR_applied_experiment _Experiment_name '3D 1H-15N NOESY' _Sample_label $lzjun_NC save_ save_NMR_spectrometer_expt _Saveframe_category NMR_applied_experiment _Experiment_name . _BMRB_pulse_sequence_accession_number . _Details . save_ ####################### # Sample conditions # ####################### save_pH_7.1_295K _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 7.1 . pH pressure 1 . atm temperature 295 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chemical_shift_reference_1 _Saveframe_category chemical_shift_reference _Details '1H referenced from H2O resonance frequency, heteronuclei - from IUPAC referencing ratio values.' loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS C 13 'methyl protons' ppm 0.00 . indirect . . . 0.251449530 water H 1 protons ppm 4.8016 internal direct . . . 1 DSS N 15 'methyl protons' ppm 0.00 . indirect . . . 0.101329118 DSS P 31 'methyl protons' ppm 0.00 . indirect . . . 0.404808636 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_lzjun_coiled_coil_pH_7.1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Experiment_label '3D CBCA(CO)NH' '3D 1H-15N NOESY' stop_ loop_ _Sample_label $lzjun_NC stop_ _Sample_conditions_label $pH_7.1_295K _Chem_shift_reference_set_label $chemical_shift_reference_1 _Mol_system_component_name 'LZ-cJun, 1' _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 2 3 GLU H H 9.063 0.020 1 2 2 3 GLU N N 122.558 0.3 1 3 3 4 ARG H H 8.237 0.020 1 4 3 4 ARG N N 120.298 0.3 1 5 4 5 ILE H H 7.849 0.020 1 6 4 5 ILE CA C 65.354 0.3 1 7 4 5 ILE CB C 37.477 0.3 1 8 4 5 ILE N N 118.346 0.3 1 9 5 6 ALA H H 7.880 0.020 1 10 5 6 ALA CA C 55.062 0.3 1 11 5 6 ALA CB C 18.204 0.3 1 12 5 6 ALA N N 121.869 0.3 1 13 6 7 ARG H H 8.054 0.020 1 14 6 7 ARG CA C 58.968 0.3 1 15 6 7 ARG CB C 30.218 0.3 1 16 6 7 ARG N N 117.326 0.3 1 17 7 8 LEU H H 8.113 0.020 1 18 7 8 LEU CA C 58.066 0.3 1 19 7 8 LEU CB C 43.482 0.3 1 20 7 8 LEU N N 121.952 0.3 1 21 8 9 GLU H H 8.887 0.020 1 22 8 9 GLU CA C 60.057 0.3 1 23 8 9 GLU CB C 29.379 0.3 1 24 8 9 GLU N N 119.055 0.3 1 25 9 10 GLU H H 7.994 0.020 1 26 9 10 GLU CA C 59.112 0.3 1 27 9 10 GLU CB C 29.291 0.3 1 28 9 10 GLU N N 120.245 0.3 1 29 10 11 LYS H H 7.983 0.020 1 30 10 11 LYS CA C 59.030 0.3 1 31 10 11 LYS CB C 31.936 0.3 1 32 10 11 LYS N N 122.178 0.3 1 33 11 12 VAL H H 8.439 0.020 1 34 11 12 VAL CA C 67.397 0.3 1 35 11 12 VAL CB C 31.753 0.3 1 36 11 12 VAL N N 119.042 0.3 1 37 12 13 LYS H H 7.782 0.020 1 38 12 13 LYS CA C 60.328 0.3 1 39 12 13 LYS CB C 32.505 0.3 1 40 12 13 LYS N N 119.034 0.3 1 41 13 14 THR H H 8.513 0.020 1 42 13 14 THR CA C 66.417 0.3 1 43 13 14 THR CB C 68.789 0.3 1 44 13 14 THR N N 117.100 0.3 1 45 14 15 LEU H H 8.700 0.020 1 46 14 15 LEU CA C 58.094 0.3 1 47 14 15 LEU CB C 43.431 0.3 1 48 14 15 LEU N N 123.428 0.3 1 49 15 16 LYS H H 8.877 0.020 1 50 15 16 LYS CA C 60.170 0.3 1 51 15 16 LYS CB C 32.316 0.3 1 52 15 16 LYS N N 120.512 0.3 1 53 16 17 ALA H H 7.776 0.020 1 54 16 17 ALA CA C 55.230 0.3 1 55 16 17 ALA CB C 17.754 0.3 1 56 16 17 ALA N N 123.042 0.3 1 57 17 18 GLN H H 8.425 0.020 1 58 17 18 GLN CA C 58.812 0.3 1 59 17 18 GLN CB C 28.473 0.3 1 60 17 18 GLN N N 119.596 0.3 1 61 18 19 ASN H H 8.870 0.020 1 62 18 19 ASN CA C 57.079 0.3 1 63 18 19 ASN CB C 38.488 0.3 1 64 18 19 ASN N N 120.639 0.3 1 65 19 20 SER H H 8.158 0.020 1 66 19 20 SER CA C 61.720 0.3 1 67 19 20 SER CB C 62.555 0.3 1 68 19 20 SER N N 115.190 0.3 1 69 20 21 GLU H H 7.830 0.020 1 70 20 21 GLU CA C 59.463 0.3 1 71 20 21 GLU CB C 29.526 0.3 1 72 20 21 GLU N N 122.990 0.3 1 73 21 22 LEU H H 8.631 0.020 1 74 21 22 LEU CA C 57.975 0.3 1 75 21 22 LEU CB C 43.752 0.3 1 76 21 22 LEU N N 121.585 0.3 1 77 22 23 ALA H H 8.730 0.020 1 78 22 23 ALA CA C 55.324 0.3 1 79 22 23 ALA CB C 17.810 0.3 1 80 22 23 ALA N N 122.822 0.3 1 81 23 24 SER H H 8.053 0.020 1 82 23 24 SER CA C 61.624 0.3 1 83 23 24 SER CB C 62.388 0.3 1 84 23 24 SER N N 114.788 0.3 1 85 24 25 THR H H 8.580 0.020 1 86 24 25 THR CA C 66.978 0.3 1 87 24 25 THR CB C 68.497 0.3 1 88 24 25 THR N N 121.117 0.3 1 89 25 26 ALA H H 8.565 0.020 1 90 25 26 ALA CA C 55.891 0.3 1 91 25 26 ALA CB C 17.170 0.3 1 92 25 26 ALA N N 122.972 0.3 1 93 26 27 ASN H H 8.124 0.020 1 94 26 27 ASN CA C 56.519 0.3 1 95 26 27 ASN CB C 38.125 0.3 1 96 26 27 ASN N N 116.161 0.3 1 97 27 28 MET H H 8.147 0.020 1 98 27 28 MET CA C 56.557 0.3 1 99 27 28 MET CB C 31.968 0.3 1 100 27 28 MET N N 121.229 0.3 1 101 28 29 LEU H H 8.472 0.020 1 102 28 29 LEU CA C 57.885 0.3 1 103 28 29 LEU CB C 43.534 0.3 1 104 28 29 LEU N N 121.619 0.3 1 105 29 30 ARG H H 8.679 0.020 1 106 29 30 ARG CA C 60.657 0.3 1 107 29 30 ARG CB C 29.958 0.3 1 108 29 30 ARG N N 119.919 0.3 1 109 30 31 GLU H H 7.783 0.020 1 110 30 31 GLU CA C 59.103 0.3 1 111 30 31 GLU CB C 29.116 0.3 1 112 30 31 GLU N N 120.277 0.3 1 113 31 32 GLN H H 7.989 0.020 1 114 31 32 GLN CA C 59.360 0.3 1 115 31 32 GLN CB C 28.431 0.3 1 116 31 32 GLN N N 120.756 0.3 1 117 32 33 VAL H H 8.600 0.020 1 118 32 33 VAL CA C 67.481 0.3 1 119 32 33 VAL CB C 31.797 0.3 1 120 32 33 VAL N N 119.789 0.3 1 121 33 34 ALA H H 7.746 0.020 1 122 33 34 ALA C C 180.940 0.3 1 123 33 34 ALA CA C 55.387 0.3 1 124 33 34 ALA CB C 17.856 0.3 1 125 33 34 ALA N N 120.235 0.3 1 126 34 35 GLN H H 8.047 0.020 1 127 34 35 GLN C C 179.492 0.3 1 128 34 35 GLN CA C 58.650 0.3 1 129 34 35 GLN CB C 28.504 0.3 1 130 34 35 GLN N N 117.037 0.3 1 131 35 36 LEU H H 8.370 0.020 1 132 35 36 LEU CA C 57.870 0.3 1 133 35 36 LEU CB C 43.293 0.3 1 134 35 36 LEU N N 121.134 0.3 1 135 36 37 LYS H H 8.529 0.020 1 136 36 37 LYS CA C 59.726 0.3 1 137 36 37 LYS CB C 32.523 0.3 1 138 36 37 LYS N N 118.322 0.3 1 139 37 38 GLN H H 7.436 0.020 1 140 37 38 GLN CA C 57.663 0.3 1 141 37 38 GLN CB C 28.732 0.3 1 142 37 38 GLN N N 116.289 0.3 1 143 38 39 LYS H H 7.743 0.020 1 144 38 39 LYS CA C 57.393 0.3 1 145 38 39 LYS CB C 33.056 0.3 1 146 38 39 LYS N N 118.702 0.3 1 147 39 40 VAL H H 7.746 0.020 1 148 39 40 VAL CA C 63.011 0.3 1 149 39 40 VAL CB C 32.321 0.3 1 150 39 40 VAL N N 118.232 0.3 1 151 40 41 MET H H 8.261 0.020 1 152 40 41 MET CA C 55.749 0.3 1 153 40 41 MET CB C 32.610 0.3 1 154 40 41 MET N N 123.294 0.3 1 155 41 42 ASN H H 8.000 0.020 1 156 41 42 ASN CA C 53.155 0.3 1 157 41 42 ASN CB C 39.076 0.3 1 158 41 42 ASN N N 125.241 0.3 1 stop_ save_