data_16763 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID 16763 _Entry.Title ; Identification of a novel ubiquitin binding site of STAM1 VHS domain by NMR spectroscopy ; _Entry.Type macromolecule _Entry.Version_type original _Entry.Submission_date 2010-03-03 _Entry.Accession_date 2010-03-03 _Entry.Last_release_date 2010-03-24 _Entry.Original_release_date 2010-03-24 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.61 _Entry.Original_NMR_STAR_version 3.0.9.13 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details . _Entry.BMRB_internal_directory_name . loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 Yoon-Hun Hong . . . 16763 2 Hee-Chul Ahn . . . 16763 3 Jongsoo Lim . . . 16763 4 Hong-Man Kim . . . 16763 5 Hye-Young Ji . . . 16763 6 Seunga Lee . . . 16763 7 Ji-Hun Kim . . . 16763 8 Eun Park . Y. . 16763 9 Hyun Song . K. . 16763 10 Bong-Jin Lee . . . 16763 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID binding_constants 1 16763 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID 'binding constants' 2 16763 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2010-03-24 2010-03-03 original author . 16763 stop_ save_ ############### # Citations # ############### save_entry_citation _Citation.Sf_category citations _Citation.Sf_framecode entry_citation _Citation.Entry_ID 16763 _Citation.ID 1 _Citation.Class 'entry citation' _Citation.CAS_abstract_code . _Citation.MEDLINE_UI_code . _Citation.DOI . _Citation.PubMed_ID 19111546 _Citation.Full_citation . _Citation.Title 'Identification of a novel ubiquitin binding site of STAM1 VHS domain by NMR spectroscopy' _Citation.Status published _Citation.Type journal _Citation.Journal_abbrev 'FEBS Lett.' _Citation.Journal_name_full . _Citation.Journal_volume 583 _Citation.Journal_issue . _Citation.Journal_ASTM . _Citation.Journal_ISSN . _Citation.Journal_CSD . _Citation.Book_title . _Citation.Book_chapter_title . _Citation.Book_volume . _Citation.Book_series . _Citation.Book_publisher . _Citation.Book_publisher_city . _Citation.Book_ISBN . _Citation.Conference_title . _Citation.Conference_site . _Citation.Conference_state_province . _Citation.Conference_country . _Citation.Conference_start_date . _Citation.Conference_end_date . _Citation.Conference_abstract_number . _Citation.Thesis_institution . _Citation.Thesis_institution_city . _Citation.Thesis_institution_country . _Citation.WWW_URL . _Citation.Page_first 287 _Citation.Page_last 292 _Citation.Year 2009 _Citation.Details . loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Yoon-Hun Hong . . . 16763 1 2 Hee-Chul Ahn . . . 16763 1 3 Jongsoo Lim . . . 16763 1 4 Hong-Man Kim . . . 16763 1 5 Hye-Young Ji . . . 16763 1 6 Seunga Lee . . . 16763 1 7 Ji-Hun Kim . . . 16763 1 8 Eun Park . Y. . 16763 1 9 Hyun Song . K. . 16763 1 10 Bong-Jin Lee . . . 16763 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID 16763 _Assembly.ID 1 _Assembly.Name 'VHS/ubiquitin complex' _Assembly.BMRB_code . _Assembly.Number_of_components 2 _Assembly.Organic_ligands . _Assembly.Metal_ions . _Assembly.Non_standard_bonds no _Assembly.Ambiguous_conformational_states . _Assembly.Ambiguous_chem_comp_sites . _Assembly.Molecules_in_chemical_exchange . _Assembly.Paramagnetic no _Assembly.Thiol_state . _Assembly.Molecular_mass . _Assembly.Enzyme_commission_number . _Assembly.Details . _Assembly.DB_query_date . _Assembly.DB_query_revised_last_date . loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 VHS 1 $VHS A . yes native no no . . . 16763 1 2 ubiquitin 2 $ubiquitin B . yes native no no . . . 16763 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_VHS _Entity.Sf_category entity _Entity.Sf_framecode VHS _Entity.Entry_ID 16763 _Entity.ID 1 _Entity.BMRB_code . _Entity.Name VHS _Entity.Type polymer _Entity.Polymer_common_type . _Entity.Polymer_type polypeptide(L) _Entity.Polymer_type_details . _Entity.Polymer_strand_ID . _Entity.Polymer_seq_one_letter_code_can . _Entity.Polymer_seq_one_letter_code ; PLFATNPFDQDVEKATSEMN TAEDWGLILDICDKVGQSRT GPKDCLRSIMRRVNHKDPHV AMQALTLLGACVSNCGKIFH LEVCSRDFASEVSNVLNKGH PKVCEKLKALMVEWTDEFKN DPQLSLISAMIKNLKEQG ; _Entity.Target_identifier . _Entity.Polymer_author_defined_seq . _Entity.Polymer_author_seq_details . _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID . _Entity.Nonpolymer_comp_label . _Entity.Number_of_monomers 138 _Entity.Number_of_nonpolymer_components . _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' _Entity.Src_method . _Entity.Parent_entity_ID . _Entity.Fragment . _Entity.Mutation . _Entity.EC_number . _Entity.Calc_isoelectric_point . _Entity.Formula_weight . _Entity.Formula_weight_exptl . _Entity.Formula_weight_exptl_meth . _Entity.Details . _Entity.DB_query_date . _Entity.DB_query_revised_last_date 2015-11-25 loop_ _Entity_db_link.Ordinal _Entity_db_link.Author_supplied _Entity_db_link.Database_code _Entity_db_link.Accession_code _Entity_db_link.Entry_mol_code _Entity_db_link.Entry_mol_name _Entity_db_link.Entry_experimental_method _Entity_db_link.Entry_structure_resolution _Entity_db_link.Entry_relation_type _Entity_db_link.Entry_details _Entity_db_link.Chimera_segment_ID _Entity_db_link.Seq_query_to_submitted_percent _Entity_db_link.Seq_subject_length _Entity_db_link.Seq_identity _Entity_db_link.Seq_positive _Entity_db_link.Seq_homology_expectation_val _Entity_db_link.Seq_align_begin _Entity_db_link.Seq_align_end _Entity_db_link.Seq_difference_details _Entity_db_link.Seq_alignment_details _Entity_db_link.Entry_ID _Entity_db_link.Entity_ID 1 no BMRB 17059 . STAM1 . . . . . 100.00 178 100.00 100.00 1.24e-97 . . . . 16763 1 2 no BMRB 17065 . Tandem_ubiquitin_binding_domains_of_STAM1 . . . . . 100.00 191 100.00 100.00 8.46e-98 . . . . 16763 1 3 no PDB 3LDZ . "Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin" . . . . . 98.55 140 100.00 100.00 3.03e-95 . . . . 16763 1 4 no DBJ BAE26170 . "unnamed protein product [Mus musculus]" . . . . . 100.00 553 99.28 100.00 3.53e-92 . . . . 16763 1 5 no DBJ BAE28168 . "unnamed protein product [Mus musculus]" . . . . . 100.00 462 99.28 100.00 1.52e-95 . . . . 16763 1 6 no DBJ BAE34187 . "unnamed protein product [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 7 no DBJ BAE37536 . "unnamed protein product [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 8 no DBJ BAE40949 . "unnamed protein product [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 9 no GB AAC50734 . "STAM [Homo sapiens]" . . . . . 100.00 540 100.00 100.00 1.80e-92 . . . . 16763 1 10 no GB AAC52840 . "STAM [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 11 no GB AAH30586 . "STAM protein [Homo sapiens]" . . . . . 100.00 403 100.00 100.00 7.81e-96 . . . . 16763 1 12 no GB AAH44666 . "Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 13 no GB AAH55326 . "Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 14 no REF NP_001070310 . "signal transducing adapter molecule 1 [Bos taurus]" . . . . . 100.00 534 100.00 100.00 1.17e-92 . . . . 16763 1 15 no REF NP_001102591 . "signal transducing adapter molecule 1 [Rattus norvegicus]" . . . . . 100.00 547 99.28 100.00 2.67e-92 . . . . 16763 1 16 no REF NP_003464 . "signal transducing adapter molecule 1 [Homo sapiens]" . . . . . 100.00 540 100.00 100.00 1.80e-92 . . . . 16763 1 17 no REF NP_035614 . "signal transducing adapter molecule 1 [Mus musculus]" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 18 no REF XP_001094352 . "PREDICTED: signal transducing adapter molecule 1 [Macaca mulatta]" . . . . . 64.49 490 100.00 100.00 1.48e-53 . . . . 16763 1 19 no SP P70297 . "RecName: Full=Signal transducing adapter molecule 1; Short=STAM-1" . . . . . 100.00 548 99.28 100.00 3.66e-92 . . . . 16763 1 20 no SP Q92783 . "RecName: Full=Signal transducing adapter molecule 1; Short=STAM-1" . . . . . 100.00 540 100.00 100.00 1.80e-92 . . . . 16763 1 21 no TPG DAA23567 . "TPA: signal transducing adaptor molecule 1 [Bos taurus]" . . . . . 100.00 534 100.00 100.00 1.17e-92 . . . . 16763 1 stop_ loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . PRO . 16763 1 2 . LEU . 16763 1 3 . PHE . 16763 1 4 . ALA . 16763 1 5 . THR . 16763 1 6 . ASN . 16763 1 7 . PRO . 16763 1 8 . PHE . 16763 1 9 . ASP . 16763 1 10 . GLN . 16763 1 11 . ASP . 16763 1 12 . VAL . 16763 1 13 . GLU . 16763 1 14 . LYS . 16763 1 15 . ALA . 16763 1 16 . THR . 16763 1 17 . SER . 16763 1 18 . GLU . 16763 1 19 . MET . 16763 1 20 . ASN . 16763 1 21 . THR . 16763 1 22 . ALA . 16763 1 23 . GLU . 16763 1 24 . ASP . 16763 1 25 . TRP . 16763 1 26 . GLY . 16763 1 27 . LEU . 16763 1 28 . ILE . 16763 1 29 . LEU . 16763 1 30 . ASP . 16763 1 31 . ILE . 16763 1 32 . CYS . 16763 1 33 . ASP . 16763 1 34 . LYS . 16763 1 35 . VAL . 16763 1 36 . GLY . 16763 1 37 . GLN . 16763 1 38 . SER . 16763 1 39 . ARG . 16763 1 40 . THR . 16763 1 41 . GLY . 16763 1 42 . PRO . 16763 1 43 . LYS . 16763 1 44 . ASP . 16763 1 45 . CYS . 16763 1 46 . LEU . 16763 1 47 . ARG . 16763 1 48 . SER . 16763 1 49 . ILE . 16763 1 50 . MET . 16763 1 51 . ARG . 16763 1 52 . ARG . 16763 1 53 . VAL . 16763 1 54 . ASN . 16763 1 55 . HIS . 16763 1 56 . LYS . 16763 1 57 . ASP . 16763 1 58 . PRO . 16763 1 59 . HIS . 16763 1 60 . VAL . 16763 1 61 . ALA . 16763 1 62 . MET . 16763 1 63 . GLN . 16763 1 64 . ALA . 16763 1 65 . LEU . 16763 1 66 . THR . 16763 1 67 . LEU . 16763 1 68 . LEU . 16763 1 69 . GLY . 16763 1 70 . ALA . 16763 1 71 . CYS . 16763 1 72 . VAL . 16763 1 73 . SER . 16763 1 74 . ASN . 16763 1 75 . CYS . 16763 1 76 . GLY . 16763 1 77 . LYS . 16763 1 78 . ILE . 16763 1 79 . PHE . 16763 1 80 . HIS . 16763 1 81 . LEU . 16763 1 82 . GLU . 16763 1 83 . VAL . 16763 1 84 . CYS . 16763 1 85 . SER . 16763 1 86 . ARG . 16763 1 87 . ASP . 16763 1 88 . PHE . 16763 1 89 . ALA . 16763 1 90 . SER . 16763 1 91 . GLU . 16763 1 92 . VAL . 16763 1 93 . SER . 16763 1 94 . ASN . 16763 1 95 . VAL . 16763 1 96 . LEU . 16763 1 97 . ASN . 16763 1 98 . LYS . 16763 1 99 . GLY . 16763 1 100 . HIS . 16763 1 101 . PRO . 16763 1 102 . LYS . 16763 1 103 . VAL . 16763 1 104 . CYS . 16763 1 105 . GLU . 16763 1 106 . LYS . 16763 1 107 . LEU . 16763 1 108 . LYS . 16763 1 109 . ALA . 16763 1 110 . LEU . 16763 1 111 . MET . 16763 1 112 . VAL . 16763 1 113 . GLU . 16763 1 114 . TRP . 16763 1 115 . THR . 16763 1 116 . ASP . 16763 1 117 . GLU . 16763 1 118 . PHE . 16763 1 119 . LYS . 16763 1 120 . ASN . 16763 1 121 . ASP . 16763 1 122 . PRO . 16763 1 123 . GLN . 16763 1 124 . LEU . 16763 1 125 . SER . 16763 1 126 . LEU . 16763 1 127 . ILE . 16763 1 128 . SER . 16763 1 129 . ALA . 16763 1 130 . MET . 16763 1 131 . ILE . 16763 1 132 . LYS . 16763 1 133 . ASN . 16763 1 134 . LEU . 16763 1 135 . LYS . 16763 1 136 . GLU . 16763 1 137 . GLN . 16763 1 138 . GLY . 16763 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . PRO 1 1 16763 1 . LEU 2 2 16763 1 . PHE 3 3 16763 1 . ALA 4 4 16763 1 . THR 5 5 16763 1 . ASN 6 6 16763 1 . PRO 7 7 16763 1 . PHE 8 8 16763 1 . ASP 9 9 16763 1 . GLN 10 10 16763 1 . ASP 11 11 16763 1 . VAL 12 12 16763 1 . GLU 13 13 16763 1 . LYS 14 14 16763 1 . ALA 15 15 16763 1 . THR 16 16 16763 1 . SER 17 17 16763 1 . GLU 18 18 16763 1 . MET 19 19 16763 1 . ASN 20 20 16763 1 . THR 21 21 16763 1 . ALA 22 22 16763 1 . GLU 23 23 16763 1 . ASP 24 24 16763 1 . TRP 25 25 16763 1 . GLY 26 26 16763 1 . LEU 27 27 16763 1 . ILE 28 28 16763 1 . LEU 29 29 16763 1 . ASP 30 30 16763 1 . ILE 31 31 16763 1 . CYS 32 32 16763 1 . ASP 33 33 16763 1 . LYS 34 34 16763 1 . VAL 35 35 16763 1 . GLY 36 36 16763 1 . GLN 37 37 16763 1 . SER 38 38 16763 1 . ARG 39 39 16763 1 . THR 40 40 16763 1 . GLY 41 41 16763 1 . PRO 42 42 16763 1 . LYS 43 43 16763 1 . ASP 44 44 16763 1 . CYS 45 45 16763 1 . LEU 46 46 16763 1 . ARG 47 47 16763 1 . SER 48 48 16763 1 . ILE 49 49 16763 1 . MET 50 50 16763 1 . ARG 51 51 16763 1 . ARG 52 52 16763 1 . VAL 53 53 16763 1 . ASN 54 54 16763 1 . HIS 55 55 16763 1 . LYS 56 56 16763 1 . ASP 57 57 16763 1 . PRO 58 58 16763 1 . HIS 59 59 16763 1 . VAL 60 60 16763 1 . ALA 61 61 16763 1 . MET 62 62 16763 1 . GLN 63 63 16763 1 . ALA 64 64 16763 1 . LEU 65 65 16763 1 . THR 66 66 16763 1 . LEU 67 67 16763 1 . LEU 68 68 16763 1 . GLY 69 69 16763 1 . ALA 70 70 16763 1 . CYS 71 71 16763 1 . VAL 72 72 16763 1 . SER 73 73 16763 1 . ASN 74 74 16763 1 . CYS 75 75 16763 1 . GLY 76 76 16763 1 . LYS 77 77 16763 1 . ILE 78 78 16763 1 . PHE 79 79 16763 1 . HIS 80 80 16763 1 . LEU 81 81 16763 1 . GLU 82 82 16763 1 . VAL 83 83 16763 1 . CYS 84 84 16763 1 . SER 85 85 16763 1 . ARG 86 86 16763 1 . ASP 87 87 16763 1 . PHE 88 88 16763 1 . ALA 89 89 16763 1 . SER 90 90 16763 1 . GLU 91 91 16763 1 . VAL 92 92 16763 1 . SER 93 93 16763 1 . ASN 94 94 16763 1 . VAL 95 95 16763 1 . LEU 96 96 16763 1 . ASN 97 97 16763 1 . LYS 98 98 16763 1 . GLY 99 99 16763 1 . HIS 100 100 16763 1 . PRO 101 101 16763 1 . LYS 102 102 16763 1 . VAL 103 103 16763 1 . CYS 104 104 16763 1 . GLU 105 105 16763 1 . LYS 106 106 16763 1 . LEU 107 107 16763 1 . LYS 108 108 16763 1 . ALA 109 109 16763 1 . LEU 110 110 16763 1 . MET 111 111 16763 1 . VAL 112 112 16763 1 . GLU 113 113 16763 1 . TRP 114 114 16763 1 . THR 115 115 16763 1 . ASP 116 116 16763 1 . GLU 117 117 16763 1 . PHE 118 118 16763 1 . LYS 119 119 16763 1 . ASN 120 120 16763 1 . ASP 121 121 16763 1 . PRO 122 122 16763 1 . GLN 123 123 16763 1 . LEU 124 124 16763 1 . SER 125 125 16763 1 . LEU 126 126 16763 1 . ILE 127 127 16763 1 . SER 128 128 16763 1 . ALA 129 129 16763 1 . MET 130 130 16763 1 . ILE 131 131 16763 1 . LYS 132 132 16763 1 . ASN 133 133 16763 1 . LEU 134 134 16763 1 . LYS 135 135 16763 1 . GLU 136 136 16763 1 . GLN 137 137 16763 1 . GLY 138 138 16763 1 stop_ save_ save_ubiquitin _Entity.Sf_category entity _Entity.Sf_framecode ubiquitin _Entity.Entry_ID 16763 _Entity.ID 2 _Entity.BMRB_code . _Entity.Name ubiquitin _Entity.Type polymer _Entity.Polymer_common_type . _Entity.Polymer_type polypeptide(L) _Entity.Polymer_type_details . _Entity.Polymer_strand_ID . _Entity.Polymer_seq_one_letter_code_can . _Entity.Polymer_seq_one_letter_code ; MQIFVKTLTGKTITLEVEPS DTIENVKAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYN IQKESTLHLVLRLRGG ; _Entity.Target_identifier . _Entity.Polymer_author_defined_seq . _Entity.Polymer_author_seq_details . _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID . _Entity.Nonpolymer_comp_label . _Entity.Number_of_monomers 76 _Entity.Number_of_nonpolymer_components . _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' _Entity.Src_method . _Entity.Parent_entity_ID . _Entity.Fragment . _Entity.Mutation . _Entity.EC_number . _Entity.Calc_isoelectric_point . _Entity.Formula_weight . _Entity.Formula_weight_exptl . _Entity.Formula_weight_exptl_meth . _Entity.Details . _Entity.DB_query_date . _Entity.DB_query_revised_last_date 2015-01-30 loop_ _Entity_db_link.Ordinal _Entity_db_link.Author_supplied _Entity_db_link.Database_code _Entity_db_link.Accession_code _Entity_db_link.Entry_mol_code _Entity_db_link.Entry_mol_name _Entity_db_link.Entry_experimental_method _Entity_db_link.Entry_structure_resolution _Entity_db_link.Entry_relation_type _Entity_db_link.Entry_details _Entity_db_link.Chimera_segment_ID _Entity_db_link.Seq_query_to_submitted_percent _Entity_db_link.Seq_subject_length _Entity_db_link.Seq_identity _Entity_db_link.Seq_positive _Entity_db_link.Seq_homology_expectation_val _Entity_db_link.Seq_align_begin _Entity_db_link.Seq_align_end _Entity_db_link.Seq_difference_details _Entity_db_link.Seq_alignment_details _Entity_db_link.Entry_ID _Entity_db_link.Entity_ID 1 no BMRB 11505 . entity . . . . . 100.00 76 98.68 98.68 2.41e-45 . . . . 16763 2 2 no BMRB 11547 . ubiquitin . . . . . 100.00 76 98.68 98.68 2.41e-45 . . . . 16763 2 3 no BMRB 15047 . denatured_ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 4 no BMRB 15410 . Ubi . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 5 no BMRB 15689 . UBB . . . . . 98.68 103 98.67 100.00 4.23e-44 . . . . 16763 2 6 no BMRB 15866 . ubiquitin . . . . . 98.68 76 100.00 100.00 2.71e-45 . . . . 16763 2 7 no BMRB 15907 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 8 no BMRB 16228 . ubiquitin . . . . . 100.00 76 97.37 98.68 1.18e-44 . . . . 16763 2 9 no BMRB 16582 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 10 no BMRB 16626 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 11 no BMRB 16880 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 12 no BMRB 16885 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 13 no BMRB 16895 . UBB+1 . . . . . 98.68 103 98.67 100.00 4.23e-44 . . . . 16763 2 14 no BMRB 17059 . ubiquitin . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 15 no BMRB 17181 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 16 no BMRB 17239 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 17 no BMRB 17333 . UB . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 18 no BMRB 17439 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 19 no BMRB 17769 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 20 no BMRB 17919 . entity . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 21 no BMRB 18582 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 22 no BMRB 18583 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 23 no BMRB 18584 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 24 no BMRB 18610 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 25 no BMRB 18611 . Ubiquitin_A_state . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 26 no BMRB 18737 . UBIQUITIN . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 27 no BMRB 19394 . ubiquitin . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 28 no BMRB 19399 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 29 no BMRB 19406 . entity . . . . . 100.00 152 100.00 100.00 4.37e-45 . . . . 16763 2 30 no BMRB 19412 . entity . . . . . 100.00 152 100.00 100.00 4.37e-45 . . . . 16763 2 31 no BMRB 19447 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 32 no BMRB 25070 . Ubiquitin . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 33 no BMRB 25230 . Ubiquitin . . . . . 100.00 78 100.00 100.00 3.66e-46 . . . . 16763 2 34 no BMRB 4245 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 35 no BMRB 4375 . Ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 36 no BMRB 4983 . Ubiquitin . . . . . 98.68 76 97.33 100.00 3.66e-44 . . . . 16763 2 37 no BMRB 5101 . uq1_51 . . . . . 67.11 53 100.00 100.00 2.13e-26 . . . . 16763 2 38 no BMRB 5387 . ubq . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 39 no BMRB 6457 . Ub . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 40 no BMRB 6466 . Ub . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 41 no BMRB 6470 . Ub . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 42 no BMRB 6488 . Ub . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 43 no BMRB 68 . ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 44 no BMRB 7111 . human_ubiquitin . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 45 no PDB 1AAR . "Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2)" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 46 no PDB 1CMX . "Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 47 no PDB 1D3Z . "Ubiquitin Nmr Structure" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 48 no PDB 1F9J . "Structure Of A New Crystal Form Of Tetraubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 49 no PDB 1FXT . "Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 50 no PDB 1G6J . "Structure Of Recombinant Human Ubiquitin In Aot Reverse Micelles" . . . . . 98.68 76 100.00 100.00 5.16e-45 . . . . 16763 2 51 no PDB 1GJZ . "Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin" . . . . . 67.11 53 100.00 100.00 2.13e-26 . . . . 16763 2 52 no PDB 1NBF . "Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 53 no PDB 1OGW . "Synthetic Ubiquitin With Fluoro-Leu At 50 And 67" . . . . . 100.00 76 97.37 97.37 1.80e-44 . . . . 16763 2 54 no PDB 1P3Q . "Mechanism Of Ubiquitin Recognition By The Cue Domain Of Vps9" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 55 no PDB 1Q5W . "Ubiquitin Recognition By Npl4 Zinc-Fingers" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 56 no PDB 1S1Q . "Tsg101(Uev) Domain In Complex With Ubiquitin" . . . . . 98.68 76 100.00 100.00 5.16e-45 . . . . 16763 2 57 no PDB 1TBE . "Structure Of Tetraubiquitin Shows How Multiubiquitin Chains Can Be Formed" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 58 no PDB 1UBI . "Synthetic Structural And Biological Studies Of The Ubiquitin System. Part 1" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 59 no PDB 1UBQ . "Structure Of Ubiquitin Refined At 1.8 Angstroms Resolution" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 60 no PDB 1UZX . "A Complex Of The Vps23 Uev With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 61 no PDB 1V80 . "Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 62 no PDB 1V81 . "Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 63 no PDB 1VX7 . "Cryo-em Structure Of The Plasmodium Falciparum 80s Ribosome Bound To The Anti-protozoan Drug Emetine, Large Subunit (protein On" . . . . . 100.00 128 98.68 100.00 9.37e-46 . . . . 16763 2 64 no PDB 1WR6 . "Crystal Structure Of Gga3 Gat Domain In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 65 no PDB 1WRD . "Crystal Structure Of Tom1 Gat Domain In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 66 no PDB 1XD3 . "Crystal Structure Of Uchl3-Ubvme Complex" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 67 no PDB 1XQQ . "Simultaneous Determination Of Protein Structure And Dynamics" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 68 no PDB 1YD8 . "Complex Of Human Gga3 Gat Domain And Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 69 no PDB 1YIW . "X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin" . . . . . 100.00 76 98.68 100.00 1.94e-45 . . . . 16763 2 70 no PDB 1YJ1 . "X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin" . . . . . 100.00 76 97.37 98.68 2.29e-44 . . . . 16763 2 71 no PDB 1YX5 . "Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX" . . . . . 100.00 98 100.00 100.00 1.57e-46 . . . . 16763 2 72 no PDB 1YX6 . "Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX" . . . . . 100.00 98 100.00 100.00 1.57e-46 . . . . 16763 2 73 no PDB 1ZGU . "Solution Structure Of The Human Mms2-Ubiquitin Complex" . . . . . 100.00 76 98.68 100.00 1.06e-45 . . . . 16763 2 74 no PDB 2AYO . "Structure Of Usp14 Bound To Ubquitin Aldehyde" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 75 no PDB 2BGF . "Nmr Structure Of Lys48-Linked Di-Ubiquitin Using Chemical Shift Perturbation Data Together With Rdcs And 15n- Relaxation Data" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 76 no PDB 2C7M . "Human Rabex-5 Residues 1-74 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 77 no PDB 2C7N . "Human Rabex-5 Residues 1-74 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 78 no PDB 2D3G . "Double Sided Ubiquitin Binding Of Hrs-Uim" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 79 no PDB 2DEN . "Solution Structure Of The Ubiquitin-Associated Domain Of Human Bmsc-Ubp And Its Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 80 no PDB 2DX5 . "The Complex Structure Between The Mouse Eap45-Glue Domain And Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 81 no PDB 2FCM . "X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin With A Cubic Space Group" . . . . . 100.00 76 97.37 98.68 2.29e-44 . . . . 16763 2 82 no PDB 2FCN . "X-Ray Crystal Structure Of A Chemically Synthesized [d-Val35]ubiquitin With A Cubic Space Group" . . . . . 100.00 76 97.37 98.68 2.29e-44 . . . . 16763 2 83 no PDB 2FCQ . "X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin With A Cubic Space Group" . . . . . 100.00 76 98.68 100.00 1.94e-45 . . . . 16763 2 84 no PDB 2FCS . "X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group" . . . . . 100.00 76 97.37 98.68 2.61e-44 . . . . 16763 2 85 no PDB 2FID . "Crystal Structure Of A Bovine Rabex-5 Fragment Complexed With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 86 no PDB 2FIF . "Crystal Structure Of A Bovine Rabex-5 Fragment Complexed With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 87 no PDB 2FUH . "Solution Structure Of The Ubch5cUB NON-Covalent Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 88 no PDB 2G45 . "Co-Crystal Structure Of Znf Ubp Domain From The Deubiquitinating Enzyme Isopeptidase T (Isot) In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 89 no PDB 2GMI . Mms2UBC13~UBIQUITIN . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 90 no PDB 2HD5 . "Usp2 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 91 no PDB 2HTH . "Structural Basis For Ubiquitin Recognition By The Human Eap45ESCRT-Ii Glue Domain" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 92 no PDB 2IBI . "Covalent Ubiquitin-Usp2 Complex" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 93 no PDB 2J7Q . "Crystal Structure Of The Ubiquitin-Specific Protease Encoded By Murine Cytomegalovirus Tegument Protein M48 In Complex With A U" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 94 no PDB 2JF5 . "Crystal Structure Of Lys63-Linked Di-Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 95 no PDB 2JRI . "Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule." . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 96 no PDB 2JY6 . "Solution Structure Of The Complex Of Ubiquitin And Ubiquilin 1 Uba Domain" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 97 no PDB 2JZZ . "Solid-State Nmr Structure Of Microcrystalline Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 98 no PDB 2K25 . "Automated Nmr Structure Of The Ubb By Fapsy" . . . . . 98.68 103 98.67 100.00 4.23e-44 . . . . 16763 2 99 no PDB 2K39 . "Recognition Dynamics Up To Microseconds Revealed From Rdc Derived Ubiquitin Ensemble In Solution" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 100 no PDB 2K6D . "Cin85 Sh3-C Domain In Complex With Ubiquitin" . . . . . 98.68 76 100.00 100.00 2.71e-45 . . . . 16763 2 101 no PDB 2K8B . "Solution Structure Of Plaa Family Ubiquitin Binding Domain (Pfuc) Cis Isomer In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 102 no PDB 2K8C . "Solution Structure Of Plaa Family Ubiquitin Binding Domain (Pfuc) Trans Isomer In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 103 no PDB 2KDE . "Nmr Structure Of Major S5a (196-306):k48 Linked Diubiquitin Species" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 104 no PDB 2KDF . "Nmr Structure Of Minor S5a (196-306):k48 Linked Diubiquitin Species" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 105 no PDB 2KHW . "Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 106 no PDB 2KJH . "Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex" . . . . . 98.68 76 100.00 100.00 2.71e-45 . . . . 16763 2 107 no PDB 2KLG . "Pere Nmr Structure Of Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 108 no PDB 2KN5 . "A Correspondence Between Solution-State Dynamics Of An Individual Protein And The Sequence And Conformational Diversity Of Its " . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 109 no PDB 2KOX . "Nmr Residual Dipolar Couplings Identify Long Range Correlated Motions In The Backbone Of The Protein Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 110 no PDB 2KTF . "Solution Nmr Structure Of Human Polymerase Iota Ubm2 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 111 no PDB 2KWU . "Solution Structure Of Ubm2 Of Murine Polymerase Iota In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 112 no PDB 2KWV . "Solution Structure Of Ubm1 Of Murine Polymerase Iota In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 113 no PDB 2KX0 . "The Solution Structure Of Ubb+1, Frameshift Mutant Of Ubiquitin B" . . . . . 98.68 103 98.67 100.00 4.23e-44 . . . . 16763 2 114 no PDB 2L0F . "Solution Nmr Structure Of Human Polymerase Iota Ubm2 (P692a Mutant) In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 115 no PDB 2L0T . "Solution Structure Of The Complex Of Ubiquitin And The Vhs Domain Of Stam2" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 116 no PDB 2L3Z . "Proton-Detected 4d Dream Solid-State Nmr Structure Of Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 117 no PDB 2LD9 . "Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs" . . . . . 100.00 77 100.00 100.00 5.39e-46 . . . . 16763 2 118 no PDB 2LJ5 . "Description Of The Structural Fluctuations Of Proteins From Structure- Based Calculations Of Residual Dipolar Couplings" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 119 no PDB 2LVO . "Structure Of The Gp78cue Domain Bound To Monubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 120 no PDB 2LVP . "Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked Diubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 121 no PDB 2LVQ . "Gp78cue Domain Bound To The Proximal Ubiquitin Of K48-Linked Diubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 122 no PDB 2LZ6 . "Distinct Ubiquitin Binding Modes Exhibited By Sh3 Domains: Molecular Determinants And Functional Implications" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 123 no PDB 2MBB . "Solution Structure Of The Human Polymerase Iota Ubm1-ubiquitin Complex" . . . . . 100.00 78 100.00 100.00 3.66e-46 . . . . 16763 2 124 no PDB 2MBH . "Nmr Structure Of Eklf(22-40)/ubiquitin Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 125 no PDB 2MBO . "K11-linked Diubiquitin Average Solution Structure At Ph 6.8, 0 Mm Nacl" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 126 no PDB 2MBQ . "K11-linked Diubiquitin Average Solution Structure At Ph 6.8, 150 Mm Nacl" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 127 no PDB 2MCN . "Distinct Ubiquitin Binding Modes Exhibited By Sh3 Domains: Molecular Determinants And Functional Implications" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 128 no PDB 2MJ5 . "Structure Of The Uba Domain Of Human Nbr1 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 129 no PDB 2MJB . "Solution Nmr Structure Of Ubiquitin Refined Against Dipolar Couplings In 4 Media" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 130 no PDB 2MOR . "A Tensor-free Method For The Structural And Dynamical Refinement Of Proteins Using Residual Dipolar Couplings" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 131 no PDB 2MRE . "Nmr Structure Of The Rad18-ubz/ubiquitin Complex" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 132 no PDB 2MUR . "Solution Structure Of The Human Faap20 Ubz-ubiquitin Complex" . . . . . 100.00 78 100.00 100.00 3.66e-46 . . . . 16763 2 133 no PDB 2NR2 . "The Mumo (Minimal Under-Restraining Minimal Over- Restraining) Method For The Determination Of Native States Ensembles Of Prote" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 134 no PDB 2O6V . "Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 135 no PDB 2OJR . "Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag" . . . . . 100.00 111 100.00 100.00 1.56e-45 . . . . 16763 2 136 no PDB 2OOB . "Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin Ligase In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 137 no PDB 2PE9 . "Nmr Based Structure Of The Open Conformation Of Lys48- Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tenso" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 138 no PDB 2PEA . "Nmr Based Structure Of The Closed Conformation Of Lys48- Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Ten" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 139 no PDB 2QHO . "Crystal Structure Of The Uba Domain From Edd Ubiquitin Ligase In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 140 no PDB 2RR9 . "The Solution Structure Of The K63-Ub2:tuims Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 141 no PDB 2RSU . "Alternative Structure Of Ubiquitin" . . . . . 100.00 76 98.68 98.68 2.41e-45 . . . . 16763 2 142 no PDB 2RU6 . "The Pure Alternative State Of Ubiquitin" . . . . . 100.00 76 98.68 98.68 2.41e-45 . . . . 16763 2 143 no PDB 2W9N . "Crystal Structure Of Linear Di-Ubiquitin" . . . . . 98.68 152 100.00 100.00 3.82e-44 . . . . 16763 2 144 no PDB 2WDT . "Crystal Structure Of Plasmodium Falciparum Uchl3 In Complex With The Suicide Inhibitor Ubvme" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 145 no PDB 2WWZ . "Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin, P212121" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 146 no PDB 2WX0 . "Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin, P21" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 147 no PDB 2WX1 . "Tab2 Nzf Domain In Complex With Lys63-Linked Tri-Ubiquitin, P212121" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 148 no PDB 2XBB . "Nedd4 Hect:ub Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 149 no PDB 2XEW . "Crystal Structure Of K11-Linked Diubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 150 no PDB 2XK5 . "Crystal Structure Of K6-Linked Diubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 151 no PDB 2Y5B . "Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde" . . . . . 98.68 152 100.00 100.00 2.82e-44 . . . . 16763 2 152 no PDB 2Z59 . "Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 153 no PDB 2ZCB . "Crystal Structure Of Ubiquitin P37aP38A" . . . . . 100.00 76 97.37 97.37 2.34e-44 . . . . 16763 2 154 no PDB 2ZCC . "Ubiquitin Crystallized Under High Pressure" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 155 no PDB 2ZNV . "Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 156 no PDB 2ZVN . "Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group" . . . . . 100.00 154 100.00 100.00 4.07e-45 . . . . 16763 2 157 no PDB 2ZVO . "Nemo Cozi Domain In Complex With Diubiquitin In C2 Space Group" . . . . . 100.00 154 100.00 100.00 4.07e-45 . . . . 16763 2 158 no PDB 3A1Q . "Crystal Structure Of The Mouse Rap80 Uims In Complex With Lys63-Linked Di-Ubiquitin" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 159 no PDB 3A33 . "Ubch5b~ubiquitin Conjugate" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 160 no PDB 3A9J . "Crystal Structure Of The Mouse Tab2-Nzf In Complex With Lys63-Linked Di-Ubiquitin" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 161 no PDB 3A9K . "Crystal Structure Of The Mouse Tab3-Nzf In Complex With Lys63-Linked Di-Ubiquitin" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 162 no PDB 3AI5 . "Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein" . . . . . 97.37 307 100.00 100.00 1.12e-41 . . . . 16763 2 163 no PDB 3ALB . "Cyclic Lys48-Linked Tetraubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 164 no PDB 3AUL . "Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin In An Open Conformation" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 165 no PDB 3AXC . "Crystal Structure Of Linear Diubiquitin" . . . . . 100.00 154 100.00 100.00 4.07e-45 . . . . 16763 2 166 no PDB 3B08 . "Crystal Structure Of The Mouse Hoil1-l-nzf In Complex With Linear Di- Ubiquitin" . . . . . 100.00 152 100.00 100.00 4.37e-45 . . . . 16763 2 167 no PDB 3B0A . "Crystal Structure Of The Mouse Hoil1-l-nzf In Complex With Linear Di- Ubiquitin" . . . . . 100.00 152 100.00 100.00 4.37e-45 . . . . 16763 2 168 no PDB 3BY4 . "Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 169 no PDB 3C0R . "Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 170 no PDB 3DVG . "Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin" . . . . . 100.00 80 100.00 100.00 5.61e-46 . . . . 16763 2 171 no PDB 3DVN . "Crystal Structure Of K63-specific Fab Apu2.16 Bound To K63-linked Di- Ubiquitin" . . . . . 100.00 80 100.00 100.00 5.61e-46 . . . . 16763 2 172 no PDB 3EEC . "X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 173 no PDB 3EFU . "X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 174 no PDB 3EHV . "X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 175 no PDB 3H1U . "Structure Of Ubiquitin In Complex With Cd Ions" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 176 no PDB 3H7P . "Crystal Structure Of K63-Linked Di-Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 177 no PDB 3H7S . "Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin Reveal A Highly Extended Chain Architecture" . . . . . 100.00 76 98.68 98.68 1.91e-43 . . . . 16763 2 178 no PDB 3HM3 . "The Structure And Conformation Of Lys-63 Linked Tetra-Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 179 no PDB 3I3T . "Crystal Structure Of Covalent Ubiquitin-usp21 Complex" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 180 no PDB 3IFW . "Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy T Hydrolase L1 Bound To Ubiquitin Vinylmethylester." . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 181 no PDB 3IHP . "Covalent Ubiquitin-Usp5 Complex" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 182 no PDB 3JSV . "Crystal Structure Of Mouse Nemo Cozi In Complex With Lys63- Linked Di-Ubiquitin" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 183 no PDB 3JVZ . E2~ubiquitin-Hect . . . . . 100.00 81 100.00 100.00 5.23e-46 . . . . 16763 2 184 no PDB 3JW0 . E2~ubiquitin-Hect . . . . . 100.00 81 100.00 100.00 5.23e-46 . . . . 16763 2 185 no PDB 3K9O . "The Crystal Structure Of E2-25k And Ubb+1 Complex" . . . . . 98.68 96 100.00 100.00 8.68e-45 . . . . 16763 2 186 no PDB 3K9P . "The Crystal Structure Of E2-25k And Ubiquitin Complex" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 187 no PDB 3KVF . "Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 188 no PDB 3KW5 . "Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase L1 Ubiquitin Vinylmethylester" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 189 no PDB 3LDZ . "Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin" . . . . . 96.05 73 100.00 100.00 1.22e-43 . . . . 16763 2 190 no PDB 3M3J . "A New Crystal Form Of Lys48-Linked Diubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 191 no PDB 3MHS . "Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND Ubiquitin Aldehyde" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 192 no PDB 3MTN . "Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor" . . . . . 88.16 85 98.51 98.51 1.00e-37 . . . . 16763 2 193 no PDB 3N30 . "Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin) Adduct" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 194 no PDB 3N32 . "The Crystal Structure Of Human Ubiquitin Adduct With Zeise's Salt" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 195 no PDB 3NHE . "High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 196 no PDB 3NOB . "Structure Of K11-linked Di-ubiquitin" . . . . . 100.00 78 100.00 100.00 3.66e-46 . . . . 16763 2 197 no PDB 3NS8 . "Crystal Structure Of An Open Conformation Of Lys48-Linked Diubiquitin At Ph 7.5" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 198 no PDB 3O65 . "Crystal Structure Of A Josephin-Ubiquitin Complex: Evolutionary Restraints On Ataxin-3 Deubiquitinating Activity" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 199 no PDB 3OFI . "Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 200 no PDB 3OJ3 . "Crystal Structure Of The A20 Znf4 And Ubiquitin Complex" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 201 no PDB 3OJ4 . "Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 202 no PDB 3ONS . "Crystal Structure Of Human Ubiquitin In A New Crystal Form" . . . . . 94.74 72 100.00 100.00 5.80e-43 . . . . 16763 2 203 no PDB 3PHD . "Crystal Structure Of Human Hdac6 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 204 no PDB 3PHW . "Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Ubiquitin" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 205 no PDB 3PRM . "Structural Analysis Of A Viral Otu Domain Protease From The Crimean- Congo Hemorrhagic Fever Virus In Complex With Human Ubiqui" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 206 no PDB 3PRP . "Structural Analysis Of A Viral Otu Domain Protease From The Crimean- Congo Hemorrhagic Fever Virus In Complex With Human Ubiqui" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 207 no PDB 3PT2 . "Structure Of A Viral Otu Domain Protease Bound To Ubiquitin" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 208 no PDB 3PTF . "X-Ray Structure Of The Non-Covalent Complex Between Ubch5a And Ubiquitin" . . . . . 100.00 79 100.00 100.00 4.53e-46 . . . . 16763 2 209 no PDB 3Q3F . "Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnas" . . . . . 98.68 189 100.00 100.00 3.64e-44 . . . . 16763 2 210 no PDB 3RUL . "New Strategy To Analyze Structures Of Glycopeptide-Target Complexes" . . . . . 98.68 79 100.00 100.00 2.70e-45 . . . . 16763 2 211 no PDB 3TBL . "Structure Of Mono-ubiquitinated Pcna: Implications For Dna Polymerase Switching And Okazaki Fragment Maturation" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 212 no PDB 3TMP . "The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 213 no PDB 3U30 . "Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin" . . . . . 100.00 172 100.00 100.00 4.69e-45 . . . . 16763 2 214 no PDB 3UGB . "Ubch5c~ubiquitin Conjugate" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 215 no PDB 3VDZ . "Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms" . . . . . 100.00 111 100.00 100.00 9.99e-46 . . . . 16763 2 216 no PDB 3VFK . "The Structure Of Monodechloro-teicoplanin In Complex With Its Ligand, Using Ubiquitin As A Ligand Carrier" . . . . . 98.68 79 100.00 100.00 2.70e-45 . . . . 16763 2 217 no PDB 3VHT . "Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 218 no PDB 3VUW . "Crystal Structure Of A20 Zf7 In Complex With Linear Ubiquitin, Form I" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 219 no PDB 3VUX . "Crystal Structure Of A20 Zf7 In Complex With Linear Ubiquitin, Form Ii" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 220 no PDB 3VUY . "Crystal Structure Of A20 Zf7 In Complex With Linear Tetraubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 221 no PDB 3ZLZ . "Lys6-linked Tri-ubiquitin" . . . . . 100.00 76 98.68 100.00 1.06e-45 . . . . 16763 2 222 no PDB 3ZNH . "Crimean Congo Hemorrhagic Fever Virus Otu Domain In Complex With Ubiquitin-propargyl." . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 223 no PDB 3ZNI . "Structure Of Phosphotyr363-cbl-b - Ubch5b-ub - Zap-70 Peptide Complex" . . . . . 100.00 81 100.00 100.00 5.23e-46 . . . . 16763 2 224 no PDB 3ZNZ . "Crystal Structure Of Otulin Otu Domain (c129a) In Complex With Met1-di Ubiquitin" . . . . . 100.00 152 100.00 100.00 4.37e-45 . . . . 16763 2 225 no PDB 4A18 . "T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1" . . . . . 100.00 129 97.37 98.68 1.83e-44 . . . . 16763 2 226 no PDB 4A19 . "T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 2" . . . . . 100.00 129 97.37 98.68 1.83e-44 . . . . 16763 2 227 no PDB 4A1B . "T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3" . . . . . 100.00 129 97.37 98.68 1.83e-44 . . . . 16763 2 228 no PDB 4A1D . "T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4" . . . . . 100.00 129 97.37 98.68 1.83e-44 . . . . 16763 2 229 no PDB 4ADX . "The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6" . . . . . 100.00 129 97.37 98.68 1.83e-44 . . . . 16763 2 230 no PDB 4AP4 . "Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex" . . . . . 100.00 80 100.00 100.00 4.66e-46 . . . . 16763 2 231 no PDB 4AUQ . "Structure Of Birc7-Ubch5b-Ub Complex." . . . . . 100.00 81 100.00 100.00 5.23e-46 . . . . 16763 2 232 no PDB 4BBN . "Nedd4 Hect-ub:ub Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 233 no PDB 4BOS . "Structure Of Otud2 Otu Domain In Complex With Ubiquitin K11- Linked Peptide" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 234 no PDB 4BOZ . "Structure Of Otud2 Otu Domain In Complex With K11-linked Di Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 235 no PDB 4BVU . "Structure Of Shigella Effector Ospg In Complex With Host Ubch5c-ubiquitin Conjugate" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 236 no PDB 4CXC . "Regulation Of The Mammalian Elongation Cycle By 40s Subunit Rolling: A Eukaryotic-specific Ribosome Rearrangement" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 237 no PDB 4CXD . "Regulation Of The Mammalian Elongation Cycle By 40s Subunit Rolling: A Eukaryotic-specific Ribosome Rearrangement" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 238 no PDB 4DDG . "Crystal Structure Of Human Otub1UBCH5B~UBUB" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 239 no PDB 4DDI . "Crystal Structure Of Human Otub1UBCH5B~UBUB" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 240 no PDB 4DHJ . "The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub Complex" . . . . . 98.68 76 100.00 100.00 2.71e-45 . . . . 16763 2 241 no PDB 4DHZ . "The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub" . . . . . 98.68 76 100.00 100.00 2.71e-45 . . . . 16763 2 242 no PDB 4FJV . "Crystal Structure Of Human Otubain2 And Ubiquitin Complex" . . . . . 100.00 86 100.00 100.00 6.71e-46 . . . . 16763 2 243 no PDB 4HXD . "Diversity Of Ubiquitin And Isg15 Specificity Amongst Nairoviruses Viral Ovarian Tumor Domain Proteases" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 244 no PDB 4I6N . "Crystal Structure Of Trichinella Spiralis Uch37 Catalytic Domain Bound To Ubiquitin Vinyl Methyl Ester" . . . . . 97.37 75 100.00 100.00 3.09e-44 . . . . 16763 2 245 no PDB 4IG7 . "Crystal Structure Of Trichinella Spiralis Uch37 Bound To Ubiquitin Vinyl Methyl Ester" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 246 no PDB 4IUM . "Equine Arteritis Virus Papain-like Protease 2 (plp2) Covalently Bound To Ubiquitin" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 247 no PDB 4JIO . "Bro1 V Domain And Ubiquitin" . . . . . 100.00 76 98.68 98.68 3.30e-45 . . . . 16763 2 248 no PDB 4JQW . "Crystal Structure Of A Complex Of Nod1 Card And Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 249 no PDB 4K1R . "Crystal Structure Of Schizosaccharomyces Pombe Sst2 Catalytic Domain And Ubiquitin" . . . . . 100.00 81 100.00 100.00 7.82e-46 . . . . 16763 2 250 no PDB 4K7S . "Crystal Structure Of Zn2-hub (human Ubiquitin) Adduct From A Solution 35 Mm Zinc Acetate/1.3 Mm Hub" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 251 no PDB 4K7U . "Crystal Structure Of Zn2.3-hub (human Ubiquitin) Adduct From A Solution 70 Mm Zinc Acetate/1.3 Mm Hub" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 252 no PDB 4K7W . "Crystal Structure Of Zn3-hub(human Ubiquitin) Adduct From A Solution 100 Mm Zinc Acetate/1.3 Mm Hub" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 253 no PDB 4KSK . "Gumby/fam105b In Complex With Ubiquitin" . . . . . 100.00 80 100.00 100.00 4.66e-46 . . . . 16763 2 254 no PDB 4KSL . "Gumby/fam105b In Complex With Linear Di-ubiquitin" . . . . . 100.00 156 100.00 100.00 4.31e-45 . . . . 16763 2 255 no PDB 4KZX . "Rabbit 40s Ribosomal Subunit In Complex With Eif1." . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 256 no PDB 4KZY . "Rabbit 40s Ribosomal Subunit In Complex With Eif1 And Eif1a." . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 257 no PDB 4KZZ . "Rabbit 40s Ribosomal Subunit In Complex With Mrna, Initiator Trna And Eif1a" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 258 no PDB 4LCD . "Structure Of An Rsp5xubxsna3 Complex: Mechanism Of Ubiquitin Ligation And Lysine Prioritization By A Hect E3" . . . . . 97.37 83 100.00 100.00 1.22e-44 . . . . 16763 2 259 no PDB 4LDT . "The Structure Of H/ceotub1-ubiquitin Aldehyde-ubch5b~ub" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 260 no PDB 4LJO . "Structure Of An Active Ligase (hoip)/ubiquitin Transfer Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 261 no PDB 4LJP . "Structure Of An Active Ligase (hoip-h889a)/ubiquitin Transfer Complex" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 262 no PDB 4M0W . "Crystal Structure Of Sars-cov Papain-like Protease C112s Mutant In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 263 no PDB 4MDK . "Cdc34-ubiquitin-cc0651 Complex" . . . . . 100.00 80 100.00 100.00 4.66e-46 . . . . 16763 2 264 no PDB 4MM3 . "Crystal Structure Of Sars-cov Papain-like Protease Plpro In Complex With Ubiquitin Aldehyde" . . . . . 98.68 76 100.00 100.00 2.99e-45 . . . . 16763 2 265 no PDB 4MSM . "Crystal Structure Of Schizosaccharomyces Pombe Amsh-like Protease Sst2 E286a Mutant Bound To Ubiquitin" . . . . . 100.00 81 100.00 100.00 7.82e-46 . . . . 16763 2 266 no PDB 4MSQ . "Crystal Structure Of Schizosaccharomyces Pombe Amsh-like Protease Sst2 Catalytic Domain Bound To Ubiquitin" . . . . . 100.00 81 100.00 100.00 7.82e-46 . . . . 16763 2 267 no PDB 4NQK . "Structure Of An Ubiquitin Complex" . . . . . 100.00 79 100.00 100.00 8.16e-46 . . . . 16763 2 268 no PDB 4NQL . "The Crystal Structure Of The Dub Domain Of Amsh Orthologue, Sst2 From S. Pombe, In Complex With Lysine 63-linked Diubiquitin" . . . . . 100.00 77 100.00 100.00 5.05e-46 . . . . 16763 2 269 no PDB 4P4H . "Caught-in-action Signaling Complex Of Rig-i 2card Domain And Mavs Card Domain" . . . . . 100.00 79 100.00 100.00 8.16e-46 . . . . 16763 2 270 no PDB 4PIG . "Crystal Structure Of The Ubiquitin K11s Mutant" . . . . . 100.00 76 98.68 98.68 1.92e-45 . . . . 16763 2 271 no PDB 4PIH . "X-ray Crystal Structure Of The K33s Mutant Of Ubiquitin" . . . . . 100.00 76 98.68 98.68 1.92e-45 . . . . 16763 2 272 no PDB 4PIJ . "X-ray Crystal Structure Of The K11s/k63s Double Mutant Of Ubiquitin" . . . . . 98.68 75 97.33 97.33 5.38e-44 . . . . 16763 2 273 no PDB 4PQT . "Insights Into The Mechanism Of Deubiquitination By Jamm Deubiquitinases From Co-crystal Structures Of Enzyme With Substrate And" . . . . . 100.00 81 100.00 100.00 7.82e-46 . . . . 16763 2 274 no PDB 4RF0 . "Crystal Structure Of The Middle-east Respiratory Syndrome Coronavirus Papain-like Protease In Complex With Ubiquitin (space Gro" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 275 no PDB 4RF1 . "Crystal Structure Of The Middle-east Respiratory Syndrome Coronavirus Papain-like Protease In Complex With Ubiquitin (space Gro" . . . . . 98.68 75 100.00 100.00 2.91e-45 . . . . 16763 2 276 no PDB 4UN2 . "Crystal Structure Of The Uba Domain Of Dsk2 In Complex With Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 277 no PDB 4UPX . "Mammalian 80s Hcv-ires Initiation Complex With Eif5b Pre-like State" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 278 no PDB 4UQ1 . "Mammalian 80s Hcv-ires Initiation Complex With Eif5b Post-like State" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 279 no PDB 4UQ4 . "Mammalian 80s Hcv-ires Initiation Complex With Eif5b Post-like State" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 280 no PDB 4UQ5 . "Mammalian 80s Hcv-ires Initiation Complex With Eif5b Pre-like State" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 281 no PDB 4W20 . "Structure Of The Mammalian 60s Ribosomal Subunit (this Entry Contains The Large Ribosomal Proteins)" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 282 no PDB 4W22 . "Structure Of The 80s Mammalian Ribosome Bound To Eef2 (this Entry Contains The Large Ribosomal Subunit Proteins)" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 283 no PDB 4W23 . "Structure Of The 80s Mammalian Ribosome Bound To Eef2 (this Entry Contains The Small Ribosomal Subunit)" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 284 no PDB 4W25 . "Structure Of The Idle Mammalian Ribosome-sec61 Complex (this Entry Contains The Large Ribosomal Subunit Proteins)" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 285 no PDB 4W27 . "Structure Of The Translating Mammalian Ribosome-sec61 Complex (this Entry Contains The Large Ribosomal Subunit Proteins)" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 286 no PDB 4W28 . "Structure Of The Translating Mammalian Ribosome-sec61 Complex (this Entry Contains The Small Ribosomal Subunit)" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 287 no PDB 4WUR . "The Crystal Structure Of The Mers-cov Papain-like Protease (c111s) With Human Ubiquitin" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 288 no PDB 4WZP . "Ser65 Phosphorylated Ubiquitin, Major Conformation" . . . . . 100.00 76 98.68 98.68 3.16e-45 . . . . 16763 2 289 no DBJ BAA03983 . "polyubiquitin [Rattus norvegicus]" . . . . . 100.00 305 100.00 100.00 2.21e-43 . . . . 16763 2 290 no DBJ BAA09860 . "polyubiquitin [Homo sapiens]" . . . . . 100.00 611 98.68 98.68 1.04e-40 . . . . 16763 2 291 no DBJ BAA11842 . "ubiquitin [Cavia porcellus]" . . . . . 100.00 311 100.00 100.00 2.40e-43 . . . . 16763 2 292 no DBJ BAA11843 . "ubiquitin extention protein [Cavia porcellus]" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 293 no DBJ BAA23486 . "polyubiquitin [Homo sapiens]" . . . . . 100.00 609 98.68 98.68 5.60e-41 . . . . 16763 2 294 no EMBL CAA25706 . "unnamed protein product [Saccharomyces cerevisiae]" . . . . . 50.00 191 100.00 100.00 2.98e-16 . . . . 16763 2 295 no EMBL CAA26488 . "unnamed protein product [Gallus gallus]" . . . . . 100.00 157 98.68 98.68 2.66e-44 . . . . 16763 2 296 no EMBL CAA28495 . "ubiquitin [Homo sapiens]" . . . . . 100.00 229 100.00 100.00 3.53e-44 . . . . 16763 2 297 no EMBL CAA30183 . "unnamed protein product [Dictyostelium discoideum]" . . . . . 100.00 128 97.37 97.37 5.38e-44 . . . . 16763 2 298 no EMBL CAA30815 . "unnamed protein product [Cricetulus sp.]" . . . . . 93.42 223 100.00 100.00 3.70e-40 . . . . 16763 2 299 no GB AAA02769 . "polyprotein [Bovine viral diarrhea virus 1-Osloss]" . . . . . 98.68 3975 97.33 100.00 1.83e-39 . . . . 16763 2 300 no GB AAA28154 . "polyubiquitin [Caenorhabditis elegans]" . . . . . 100.00 838 97.37 98.68 7.19e-40 . . . . 16763 2 301 no GB AAA28997 . "ubiquitin [Drosophila melanogaster]" . . . . . 100.00 231 100.00 100.00 3.30e-44 . . . . 16763 2 302 no GB AAA28998 . "ubiquitin-hybrid protein precursor [Drosophila melanogaster]" . . . . . 100.00 156 100.00 100.00 9.66e-46 . . . . 16763 2 303 no GB AAA28999 . "ubiquitin, partial [Drosophila melanogaster]" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 304 no PIR I50437 . "polyubiquitin 4 - chicken [Gallus gallus]" . . . . . 100.00 305 100.00 100.00 2.21e-43 . . . . 16763 2 305 no PIR I51568 . "polyubiquitin - African clawed frog (fragment)" . . . . . 100.00 167 100.00 100.00 6.83e-45 . . . . 16763 2 306 no PIR I65237 . "ubiquitin / ribosomal protein L40, cytosolic [validated] - rat" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 307 no PIR JN0790 . "ubiquitin/ribosomal protein CEP52 fusion protein - Leishmania major" . . . . . 100.00 128 97.37 98.68 2.33e-45 . . . . 16763 2 308 no PIR S13928 . "ubiquitin precursor - chicken [Gallus gallus]" . . . . . 100.00 229 100.00 100.00 3.64e-44 . . . . 16763 2 309 no PRF 0412265A . ubiquitin . . . . . 98.68 75 98.67 98.67 1.22e-44 . . . . 16763 2 310 no PRF 1101405A . "ubiquitin precursor" . . . . . 50.00 191 100.00 100.00 2.95e-16 . . . . 16763 2 311 no PRF 1212243A . "ubiquitin S1" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 312 no PRF 1212243B . "ubiquitin S5" . . . . . 92.11 77 98.57 98.57 7.61e-41 . . . . 16763 2 313 no PRF 1212243C . "ubiquitin S3" . . . . . 100.00 76 100.00 100.00 4.45e-46 . . . . 16763 2 314 no REF NP_001005123 . "ubiquitin A-52 residue ribosomal protein fusion product 1 [Xenopus (Silurana) tropicalis]" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 315 no REF NP_001006688 . "ubiquitin C [Xenopus (Silurana) tropicalis]" . . . . . 100.00 609 100.00 100.00 9.87e-42 . . . . 16763 2 316 no REF NP_001009117 . "polyubiquitin-B [Pan troglodytes]" . . . . . 100.00 229 100.00 100.00 3.53e-44 . . . . 16763 2 317 no REF NP_001009202 . "polyubiquitin-B [Ovis aries]" . . . . . 100.00 305 98.68 100.00 3.89e-43 . . . . 16763 2 318 no REF NP_001009286 . "ubiquitin-60S ribosomal protein L40 [Ovis aries]" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 319 no SP P0C273 . "RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Con" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 320 no SP P0C275 . "RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Con" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 321 no SP P0C276 . "RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Con" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 322 no SP P0CG47 . "RecName: Full=Polyubiquitin-B; Contains: RecName: Full=Ubiquitin; Flags: Precursor [Homo sapiens]" . . . . . 100.00 229 100.00 100.00 3.53e-44 . . . . 16763 2 323 no SP P0CG48 . "RecName: Full=Polyubiquitin-C; Contains: RecName: Full=Ubiquitin; Flags: Precursor [Homo sapiens]" . . . . . 100.00 685 100.00 100.00 1.45e-41 . . . . 16763 2 324 no TPD FAA00319 . "TPA: polyubiquitin [Cryptococcus neoformans var. neoformans B-3501A]" . . . . . 100.00 456 97.37 98.68 7.53e-41 . . . . 16763 2 325 no TPG DAA18802 . "TPA: polyubiquitin [Bos taurus]" . . . . . 100.00 305 100.00 100.00 2.33e-43 . . . . 16763 2 326 no TPG DAA20663 . "TPA: ubiquitin C [Bos taurus]" . . . . . 98.68 314 98.67 100.00 8.85e-42 . . . . 16763 2 327 no TPG DAA20672 . "TPA: ubiquitin B-like [Bos taurus]" . . . . . 100.00 77 98.68 98.68 3.32e-45 . . . . 16763 2 328 no TPG DAA24675 . "TPA: 40S ribosomal protein S27a [Bos taurus]" . . . . . 100.00 156 100.00 100.00 5.21e-46 . . . . 16763 2 329 no TPG DAA28295 . "TPA: ubiquitin and ribosomal protein L40 [Bos taurus]" . . . . . 100.00 128 100.00 100.00 3.09e-46 . . . . 16763 2 stop_ loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . 16763 2 2 . GLN . 16763 2 3 . ILE . 16763 2 4 . PHE . 16763 2 5 . VAL . 16763 2 6 . LYS . 16763 2 7 . THR . 16763 2 8 . LEU . 16763 2 9 . THR . 16763 2 10 . GLY . 16763 2 11 . LYS . 16763 2 12 . THR . 16763 2 13 . ILE . 16763 2 14 . THR . 16763 2 15 . LEU . 16763 2 16 . GLU . 16763 2 17 . VAL . 16763 2 18 . GLU . 16763 2 19 . PRO . 16763 2 20 . SER . 16763 2 21 . ASP . 16763 2 22 . THR . 16763 2 23 . ILE . 16763 2 24 . GLU . 16763 2 25 . ASN . 16763 2 26 . VAL . 16763 2 27 . LYS . 16763 2 28 . ALA . 16763 2 29 . LYS . 16763 2 30 . ILE . 16763 2 31 . GLN . 16763 2 32 . ASP . 16763 2 33 . LYS . 16763 2 34 . GLU . 16763 2 35 . GLY . 16763 2 36 . ILE . 16763 2 37 . PRO . 16763 2 38 . PRO . 16763 2 39 . ASP . 16763 2 40 . GLN . 16763 2 41 . GLN . 16763 2 42 . ARG . 16763 2 43 . LEU . 16763 2 44 . ILE . 16763 2 45 . PHE . 16763 2 46 . ALA . 16763 2 47 . GLY . 16763 2 48 . LYS . 16763 2 49 . GLN . 16763 2 50 . LEU . 16763 2 51 . GLU . 16763 2 52 . ASP . 16763 2 53 . GLY . 16763 2 54 . ARG . 16763 2 55 . THR . 16763 2 56 . LEU . 16763 2 57 . SER . 16763 2 58 . ASP . 16763 2 59 . TYR . 16763 2 60 . ASN . 16763 2 61 . ILE . 16763 2 62 . GLN . 16763 2 63 . LYS . 16763 2 64 . GLU . 16763 2 65 . SER . 16763 2 66 . THR . 16763 2 67 . LEU . 16763 2 68 . HIS . 16763 2 69 . LEU . 16763 2 70 . VAL . 16763 2 71 . LEU . 16763 2 72 . ARG . 16763 2 73 . LEU . 16763 2 74 . ARG . 16763 2 75 . GLY . 16763 2 76 . GLY . 16763 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 16763 2 . GLN 2 2 16763 2 . ILE 3 3 16763 2 . PHE 4 4 16763 2 . VAL 5 5 16763 2 . LYS 6 6 16763 2 . THR 7 7 16763 2 . LEU 8 8 16763 2 . THR 9 9 16763 2 . GLY 10 10 16763 2 . LYS 11 11 16763 2 . THR 12 12 16763 2 . ILE 13 13 16763 2 . THR 14 14 16763 2 . LEU 15 15 16763 2 . GLU 16 16 16763 2 . VAL 17 17 16763 2 . GLU 18 18 16763 2 . PRO 19 19 16763 2 . SER 20 20 16763 2 . ASP 21 21 16763 2 . THR 22 22 16763 2 . ILE 23 23 16763 2 . GLU 24 24 16763 2 . ASN 25 25 16763 2 . VAL 26 26 16763 2 . LYS 27 27 16763 2 . ALA 28 28 16763 2 . LYS 29 29 16763 2 . ILE 30 30 16763 2 . GLN 31 31 16763 2 . ASP 32 32 16763 2 . LYS 33 33 16763 2 . GLU 34 34 16763 2 . GLY 35 35 16763 2 . ILE 36 36 16763 2 . PRO 37 37 16763 2 . PRO 38 38 16763 2 . ASP 39 39 16763 2 . GLN 40 40 16763 2 . GLN 41 41 16763 2 . ARG 42 42 16763 2 . LEU 43 43 16763 2 . ILE 44 44 16763 2 . PHE 45 45 16763 2 . ALA 46 46 16763 2 . GLY 47 47 16763 2 . LYS 48 48 16763 2 . GLN 49 49 16763 2 . LEU 50 50 16763 2 . GLU 51 51 16763 2 . ASP 52 52 16763 2 . GLY 53 53 16763 2 . ARG 54 54 16763 2 . THR 55 55 16763 2 . LEU 56 56 16763 2 . SER 57 57 16763 2 . ASP 58 58 16763 2 . TYR 59 59 16763 2 . ASN 60 60 16763 2 . ILE 61 61 16763 2 . GLN 62 62 16763 2 . LYS 63 63 16763 2 . GLU 64 64 16763 2 . SER 65 65 16763 2 . THR 66 66 16763 2 . LEU 67 67 16763 2 . HIS 68 68 16763 2 . LEU 69 69 16763 2 . VAL 70 70 16763 2 . LEU 71 71 16763 2 . ARG 72 72 16763 2 . LEU 73 73 16763 2 . ARG 74 74 16763 2 . GLY 75 75 16763 2 . GLY 76 76 16763 2 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID 16763 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $VHS . 9606 organism . 'Homo sapiens' Human . . Eukaryota Metazoa Homo sapiens . . . . . . . . . . . . . . . . . . . . . 16763 1 2 2 $ubiquitin . . 'not applicable' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16763 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID 16763 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $VHS . 'recombinant technology' 'Escherichia coli' . . . Escherichia coli Bl21 DE3 . . . . . . . . . . . . . . GST . . . . . . 16763 1 2 2 $ubiquitin . 'recombinant technology' 'Escherichia coli' . . . Escherichia coli BL21 DE3 . . . . . . . . . . . . . . pET . . . . . . 16763 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID 16763 _Sample.ID 1 _Sample.Type solution _Sample.Sub_type . _Sample.Details 'ubiquitin's concentration was increased: 0.02, 0.04, 0.06, 0.1, 0.15, 0.2, 0.3 and 0.5 and spectra were taken at each concentration (mM)' _Sample.Aggregate_sample_number . _Sample.Solvent_system '95% H2O/5% D2O' _Sample.Preparation_date . _Sample.Preparation_expiration_date . _Sample.Polycrystallization_protocol . _Sample.Single_crystal_protocol . _Sample.Crystal_grow_apparatus . _Sample.Crystal_grow_atmosphere . _Sample.Crystal_grow_details . _Sample.Crystal_grow_method . _Sample.Crystal_grow_method_cit_ID . _Sample.Crystal_grow_pH . _Sample.Crystal_grow_pH_range . _Sample.Crystal_grow_pressure . _Sample.Crystal_grow_pressure_esd . _Sample.Crystal_grow_seeding . _Sample.Crystal_grow_seeding_cit_ID . _Sample.Crystal_grow_temp . _Sample.Crystal_grow_temp_details . _Sample.Crystal_grow_temp_esd . _Sample.Crystal_grow_time . _Sample.Oriented_sample_prep_protocol . _Sample.Lyophilization_cryo_protectant . _Sample.Storage_protocol . loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Assembly_ID _Sample_component.Assembly_label _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 VHS '[U-100% 15N]' . . 1 $VHS . . 0.1 . . mM . . . . 16763 1 2 ubiquitin 'natural abundance' . . 2 $ubiquitin . . . 0.02 0.5 mM . . . . 16763 1 3 'sodium phosphate buffer' 'natural abundance' . . . . . . 20 . . mM . . . . 16763 1 4 DTT 'natural abundance' . . . . . . 1 . . mM . . . . 16763 1 5 'sodium chloride' 'natural abundance' . . . . . . 0.1 . . mM . . . . 16763 1 6 PMSF 'natural abundance' . . . . . . 0.5 . . mM . . . . 16763 1 7 'sodium azide' 'natural abundance' . . . . . . 0.05 . . % . . . . 16763 1 8 H2O 'natural abundance' . . . . . . 95 . . % . . . . 16763 1 9 D2O 'natural abundance' . . . . . . 5 . . % . . . . 16763 1 stop_ save_ save_sample_2 _Sample.Sf_category sample _Sample.Sf_framecode sample_2 _Sample.Entry_ID 16763 _Sample.ID 2 _Sample.Type solution _Sample.Sub_type . _Sample.Details 'The concentration of VHS was increased: 0.01, 0.03, 0.05, 0.1, 0.15 and 0.2 and a spectrum was taken at each concentration (mM)' _Sample.Aggregate_sample_number . _Sample.Solvent_system '95% H2O/5% D2O' _Sample.Preparation_date . _Sample.Preparation_expiration_date . _Sample.Polycrystallization_protocol . _Sample.Single_crystal_protocol . _Sample.Crystal_grow_apparatus . _Sample.Crystal_grow_atmosphere . _Sample.Crystal_grow_details . _Sample.Crystal_grow_method . _Sample.Crystal_grow_method_cit_ID . _Sample.Crystal_grow_pH . _Sample.Crystal_grow_pH_range . _Sample.Crystal_grow_pressure . _Sample.Crystal_grow_pressure_esd . _Sample.Crystal_grow_seeding . _Sample.Crystal_grow_seeding_cit_ID . _Sample.Crystal_grow_temp . _Sample.Crystal_grow_temp_details . _Sample.Crystal_grow_temp_esd . _Sample.Crystal_grow_time . _Sample.Oriented_sample_prep_protocol . _Sample.Lyophilization_cryo_protectant . _Sample.Storage_protocol . loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Assembly_ID _Sample_component.Assembly_label _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 VHS 'natural abundance' . . 1 $VHS . . 0.0.01-0.2 0.01 . mM . . . . 16763 2 2 ubiquitin '[U-100% 15N]' . . 2 $ubiquitin . . 0.05 . . mM . . . . 16763 2 3 'sodium phosphate buffer' 'natural abundance' . . . . . . 20 . . mM . . . . 16763 2 4 DTT 'natural abundance' . . . . . . 1 . . mM . . . . 16763 2 5 'sodium chloride' 'natural abundance' . . . . . . 0.1 . . mM . . . . 16763 2 6 PMSF 'natural abundance' . . . . . . 0.5 . . mM . . . . 16763 2 7 'sodium azide' 'natural abundance' . . . . . . 0.05 . . % . . . . 16763 2 8 H2O 'natural abundance' . . . . . . 95 . . % . . . . 16763 2 9 D2O 'natural abundance' . . . . . . 5 . . % . . . . 16763 2 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID 16763 _Sample_condition_list.ID 1 _Sample_condition_list.Details . loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 6.8 . pH 16763 1 pressure 1 . atm 16763 1 temperature 298 . K 16763 1 stop_ save_ ############################ # Computer software used # ############################ save_NMRPipe _Software.Sf_category software _Software.Sf_framecode NMRPipe _Software.Entry_ID 16763 _Software.ID 1 _Software.Name NMRPipe _Software.Version 2.3 _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' . . 16763 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID processing 16763 1 stop_ save_ save_NMRView _Software.Sf_category software _Software.Sf_framecode NMRView _Software.Entry_ID 16763 _Software.ID 2 _Software.Name NMRView _Software.Version . _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Johnson, One Moon Scientific' . . 16763 2 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'data analysis' 16763 2 stop_ save_ save_KaleidaGraph _Software.Sf_category software _Software.Sf_framecode KaleidaGraph _Software.Entry_ID 16763 _Software.ID 3 _Software.Name KaleidaGraph _Software.Version 3.5 _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Synergy Software' . . 16763 3 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'non-linear regression' 16763 3 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode spectrometer_1 _NMR_spectrometer.Entry_ID 16763 _NMR_spectrometer.ID 1 _NMR_spectrometer.Details . _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DRX _NMR_spectrometer.Serial_number . _NMR_spectrometer.Field_strength 500 save_ save_spectrometer_2 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode spectrometer_2 _NMR_spectrometer.Entry_ID 16763 _NMR_spectrometer.ID 2 _NMR_spectrometer.Details 'with cryoprobe' _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model Avance _NMR_spectrometer.Serial_number . _NMR_spectrometer.Field_strength 600 save_ save_spectrometer_3 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode spectrometer_3 _NMR_spectrometer.Entry_ID 16763 _NMR_spectrometer.ID 3 _NMR_spectrometer.Details . _NMR_spectrometer.Manufacturer Varian _NMR_spectrometer.Model VNMRS _NMR_spectrometer.Serial_number . _NMR_spectrometer.Field_strength 900 save_ save_NMR_spectrometer_list _NMR_spectrometer_list.Sf_category NMR_spectrometer_list _NMR_spectrometer_list.Sf_framecode NMR_spectrometer_list _NMR_spectrometer_list.Entry_ID 16763 _NMR_spectrometer_list.ID 1 loop_ _NMR_spectrometer_view.ID _NMR_spectrometer_view.Name _NMR_spectrometer_view.Manufacturer _NMR_spectrometer_view.Model _NMR_spectrometer_view.Serial_number _NMR_spectrometer_view.Field_strength _NMR_spectrometer_view.Details _NMR_spectrometer_view.Citation_ID _NMR_spectrometer_view.Citation_label _NMR_spectrometer_view.Entry_ID _NMR_spectrometer_view.NMR_spectrometer_list_ID 1 spectrometer_1 Bruker DRX . 500 . . . 16763 1 2 spectrometer_2 Bruker Avance . 600 'with cryoprobe' . . 16763 1 3 spectrometer_3 Varian VNMRS . 900 . . . 16763 1 stop_ save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID 16763 _Experiment_list.ID 1 _Experiment_list.Details . loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.MS_expt_ID _Experiment.MS_expt_label _Experiment.SAXS_expt_ID _Experiment.SAXS_expt_label _Experiment.FRET_expt_ID _Experiment.FRET_expt_label _Experiment.EMR_expt_ID _Experiment.EMR_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_volume _Experiment.Sample_volume_units _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.Sample_spinning_rate _Experiment.Sample_angle _Experiment.NMR_tube_type _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectrometer_probe_ID _Experiment.NMR_spectrometer_probe_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Mass_spectrometer_ID _Experiment.Mass_spectrometer_label _Experiment.Xray_instrument_ID _Experiment.Xray_instrument_label _Experiment.Fluorescence_instrument_ID _Experiment.Fluorescence_instrument_label _Experiment.EMR_instrument_ID _Experiment.EMR_instrument_label _Experiment.Chromatographic_system_ID _Experiment.Chromatographic_system_label _Experiment.Chromatographic_column_ID _Experiment.Chromatographic_column_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '2D 1H-15N HSQC' no . . . . . . . . . . 1 $sample_1 isotropic . . 1 $sample_conditions_1 . . . . . . . . . . . . . . . . . . . . . 16763 1 2 '2D 1H-15N HSQC' no . . . . . . . . . . 2 $sample_2 isotropic . . 1 $sample_conditions_1 . . . . . . . . . . . . . . . . . . . . . 16763 1 stop_ save_ save_binding_data _Binding_value_list.Sf_category binding_data _Binding_value_list.Sf_framecode binding_data _Binding_value_list.Entry_ID 16763 _Binding_value_list.ID 1 _Binding_value_list.Sample_condition_list_ID 1 _Binding_value_list.Sample_condition_list_label $sample_conditions_1 _Binding_value_list.Details . _Binding_value_list.Text_data_format . _Binding_value_list.Text_data . loop_ _Binding_experiment.Experiment_ID _Binding_experiment.Experiment_name _Binding_experiment.Sample_ID _Binding_experiment.Sample_label _Binding_experiment.Sample_state _Binding_experiment.Entry_ID _Binding_experiment.Binding_value_list_ID 1 '2D 1H-15N HSQC' 1 $sample_1 isotropic 16763 1 2 '2D 1H-15N HSQC' 2 $sample_2 isotropic 16763 1 stop_ loop_ _Binding_software.Software_ID _Binding_software.Software_label _Binding_software.Method_ID _Binding_software.Method_label _Binding_software.Entry_ID _Binding_software.Binding_value_list_ID 1 $NMRPipe . . 16763 1 2 $NMRView . . 16763 1 3 $KaleidaGraph . . 16763 1 stop_ loop_ _Binding_result.ID _Binding_result.Experiment_ID _Binding_result.Assembly_ID _Binding_result.Atm_obs_assembly_atom_ID _Binding_result.Atm_obs_entity_assembly_ID _Binding_result.Atm_obs_entity_ID _Binding_result.Atm_obs_comp_index_ID _Binding_result.Atm_obs_seq_ID _Binding_result.Atm_obs_comp_ID _Binding_result.Atm_obs_atom_ID _Binding_result.Atm_obs_atom_type _Binding_result.Atm_obs_atom_isotope_number _Binding_result.Resonance_ID _Binding_result.Atm_obs_auth_entity_assembly_ID _Binding_result.Atm_obs_auth_seq_ID _Binding_result.Atm_obs_auth_comp_ID _Binding_result.Atm_obs_auth_atom_ID _Binding_result.Expt_observed_param _Binding_result.Val_type _Binding_result.Val _Binding_result.Val_err _Binding_result.Val_units _Binding_result.Entry_ID _Binding_result.Binding_value_list_ID 1 1 1 . 1 1 . . . . . . . . . . . . Kd 52 10 uM 16763 1 2 2 1 . 1 1 . . . . . . . . . . . . Kd 41 6 uM 16763 1 stop_ loop_ _Binding_partners.Binding_result_ID _Binding_partners.Assembly_ID _Binding_partners.Entity_assembly_ID _Binding_partners.Entity_assembly_name _Binding_partners.Entity_ID _Binding_partners.Entity_label _Binding_partners.Entry_ID _Binding_partners.Binding_value_list_ID 1 1 1 VHS 1 $VHS 16763 1 1 1 2 ubiquitin 2 $ubiquitin 16763 1 2 1 1 VHS 1 $VHS 16763 1 2 1 2 ubiquitin 2 $ubiquitin 16763 1 stop_ save_