Package EDU.bmrb.rtfgen

RTF generator.

See:
Description

Interface Summary

VectorSorter.Comparer

This interface defines the compare() method used to compare two objects.

Class Summary

pair	Pair of strings class
rtf	RTF constants.
rtfgen	Converts chemical shift table from NMR-STAR loop to RTF.
shiftdata	Class that contains raw chemical shift data.
triple	Structure that holds amino-acid symbol, sequence code and an RTF formatted table row.
VectorSorter	This class defines a bunch of static methods for efficiently sorting Vectors.

Package EDU.bmrb.rtfgen Description

RTF generator.

Package Details

Converts chemical shift table from NMR-STAR loop to RTF table.

Classes

rtf contains constants: RTF codes, amino acid labels, etc.

EDU.bmrb.rtfgen is the executable class that handles the conversion.

shiftdata: data structure that holds chemical shifts table.

pair, triple, and VectorSoter: utility classes for sorting the table etc.

Usage

java EDU.bmrb.rtfgen.rtfgen input file sort order output file

• input file: NMR-STAR file with chemical shifts. It can be just the chemical shifts loop: the program will attempt to add data block and saveframe names required by STARlib.
• sort order: 1 -- by chemical shift number, 2 -- by amino acid.
• output file: use dash '-' to print to stdout.