#!/bin/csh

xyz2pipe  -in data/test%03d.fid -x -verb                         \
   | nmrPipe  -fn POLY -time                                     \
#   | nmrPipe  -fn SOL                                            \
   | nmrPipe  -fn SP -size 512 -off 0.5 -end 0.99 -pow 2 -c 0.5            \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 97.0 -p1 0.0                         \
   | nmrPipe  -fn EXT -x1 -1ppm -xn 6.5ppm -di -sw     \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn SP -off 0.5 -end 0.98 -pow 1 -c 0.5            \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 43.0 -p1  0.0                           \
   | nmrPipe  -fn CS  -ls 2ppm   -sw                           \
   | nmrPipe  -fn EXT -x1 -1ppm -xn 6.5ppm -di -sw     \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn POLY -ord 0                                    \
   | nmrPipe  -fn TP                                    \
   | nmrPipe  -fn POLY -ord 0                        \
   | pipe2xyz -out data/test%03d.ft2 -x -ov

xyz2pipe -in data/test%03d.ft2 -z -verb                        \
   | nmrPipe  -fn LP -fb                                         \
   | nmrPipe  -fn SP -off 0.50 -end 0.99 -pow 1 -c 0.5            \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0  40.0 -p1 0.0 -di                       \
#   | nmrPipe  -fn CS  -rs 8ppm   -sw                           \
   | nmrPipe  -fn POLY -ord 0                        \
   | pipe2xyz -out data/test%03d.ft3 -z -verb -ov

xyz2pipe -in data/test%03d.ft3 -y -verb \
 > hcch_cosy.ft3

# use below to allow cursor alignment of the hcch_cosy and cosy with the Cnoesy in sparky
# pipe2ucsf -132 hcch_cosy.ft3 hcch_cosy.ucsf