#!/bin/csh

xyz2pipe  -in fids/test%03d.fid -x -verb                         \
#   | nmrPipe  -fn SOL                                            \
#    | nmrPipe  -fn LP -before  -pred 1 -ord 16       \
   | nmrPipe  -fn SP -size 512 -off 0.45 -end 0.98 -pow 2 -c 0.5  \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 105.0 -p1 0.0                         \
   | nmrPipe  -fn PS -p0 -63.0 -p1 108.0                         \
   | nmrPipe  -fn PS -p0 -14.6 -p1 17.0   -di                      \
   | nmrPipe  -fn EXT -x1  -2.0ppm -xn 7.0ppm  -sw -verb  \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn SP -off 0.40 -end 0.98 -pow 1 -c 0.5            \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 0.0 -p1  0.0 -di                       \
#   | nmrPipe  -fn CS  -ls 0.3ppm   -sw                           \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn POLY -auto -ord 0                               \
   | nmrPipe  -fn TP                                    \
   | nmrPipe  -fn POLY -auto -ord 0                        \
   | pipe2xyz -out data/test%03d.ft2 -x -ov

xyz2pipe -in data/test%03d.ft2 -z -verb                        \
   | nmrPipe  -fn LP -fb                                         \
   | nmrPipe  -fn SP -off 0.5 -end 1.00 -pow 2 -c 0.5            \
   | nmrPipe  -fn ZF -auto                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 31.0 -p1 0.0 -di                       \
   | nmrPipe  -fn POLY -auto -ord 0                        \
   | pipe2xyz -out data/test%03d.ft3 -z -verb -ov

#xyz2pipe  -in data/test%03d.ft3 -x -verb                  \
#   | nmrPipe  -fn EXT -x1 -1.0ppm -xn 6.0ppm -di -sw -verb  \
#   | pipe2xyz -out data/test%03d.ft3 -x -ov

xyz2pipe -in data/test%03d.ft3 -y -verb \
 > c13_noesy_aliph.ft3

# use below to allow cursor alignment with the hcch_tocsy and cosy in sparky 
# pipe2ucsf -132 c13_noesy_aliph.ft3 c13_noesy_aliph.ucsf