BMRB Entry 18307
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18307
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Title: Human APOBEC2 chemical shifts PubMed: 22339232
Deposition date: 2012-03-01 Original release date: 2012-03-28
Authors: Krzysiak, Troy; Jung, Jinwon; Thompson, James; Baker, David; Gronenborn, Angela
Citation: Krzysiak, Troy; Jung, Jinwon; Thompson, James; Baker, David; Gronenborn, Angela. "APOBEC2 is a Monomer in Solution: Implications for APOBEC3G Models" Biochemistry 51, 2008-2017 (2012).
Assembly members:
APOBEC2_1-224, polymer, 227 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
APOBEC2_1-224: SEFMAQKEEAAVATEAASQN
GEDLENLDDPEKLKELIELP
PFEIVTGERLPANFFKFQFR
NVEYSSGRNKTFLCYVVEAQ
GKGGQVQASRGYLEDEHAAA
HAEEAFFNTILPAFDPALRY
NVTWYVSSSPCAACADRIIK
TLSKTKNLRLLILVGRLFMW
EEPEIQAALKKLKEAGCKLR
IMKPQDFEYVWQNFVEQEEG
ESKAFQPWEDIQENFLYYEE
KLADILK
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 387 |
15N chemical shifts | 198 |
1H chemical shifts | 198 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | A2POBEC2 1-224 | 1 |
Entities:
Entity 1, A2POBEC2 1-224 227 residues - Formula weight is not available
Start SEF are cloning artifacts
1 | SER | GLU | PHE | MET | ALA | GLN | LYS | GLU | GLU | ALA | ||||
2 | ALA | VAL | ALA | THR | GLU | ALA | ALA | SER | GLN | ASN | ||||
3 | GLY | GLU | ASP | LEU | GLU | ASN | LEU | ASP | ASP | PRO | ||||
4 | GLU | LYS | LEU | LYS | GLU | LEU | ILE | GLU | LEU | PRO | ||||
5 | PRO | PHE | GLU | ILE | VAL | THR | GLY | GLU | ARG | LEU | ||||
6 | PRO | ALA | ASN | PHE | PHE | LYS | PHE | GLN | PHE | ARG | ||||
7 | ASN | VAL | GLU | TYR | SER | SER | GLY | ARG | ASN | LYS | ||||
8 | THR | PHE | LEU | CYS | TYR | VAL | VAL | GLU | ALA | GLN | ||||
9 | GLY | LYS | GLY | GLY | GLN | VAL | GLN | ALA | SER | ARG | ||||
10 | GLY | TYR | LEU | GLU | ASP | GLU | HIS | ALA | ALA | ALA | ||||
11 | HIS | ALA | GLU | GLU | ALA | PHE | PHE | ASN | THR | ILE | ||||
12 | LEU | PRO | ALA | PHE | ASP | PRO | ALA | LEU | ARG | TYR | ||||
13 | ASN | VAL | THR | TRP | TYR | VAL | SER | SER | SER | PRO | ||||
14 | CYS | ALA | ALA | CYS | ALA | ASP | ARG | ILE | ILE | LYS | ||||
15 | THR | LEU | SER | LYS | THR | LYS | ASN | LEU | ARG | LEU | ||||
16 | LEU | ILE | LEU | VAL | GLY | ARG | LEU | PHE | MET | TRP | ||||
17 | GLU | GLU | PRO | GLU | ILE | GLN | ALA | ALA | LEU | LYS | ||||
18 | LYS | LEU | LYS | GLU | ALA | GLY | CYS | LYS | LEU | ARG | ||||
19 | ILE | MET | LYS | PRO | GLN | ASP | PHE | GLU | TYR | VAL | ||||
20 | TRP | GLN | ASN | PHE | VAL | GLU | GLN | GLU | GLU | GLY | ||||
21 | GLU | SER | LYS | ALA | PHE | GLN | PRO | TRP | GLU | ASP | ||||
22 | ILE | GLN | GLU | ASN | PHE | LEU | TYR | TYR | GLU | GLU | ||||
23 | LYS | LEU | ALA | ASP | ILE | LEU | LYS |
Samples:
sample_1: HEPES 20 mM; sodium chloride 50 mM; DTT 5 mM; APOBEC2 1-224, [U-100% 13C; U-100% 15N; U-80% 2H], 1 mM; H2O 95%; D2O 5%
sample_conditions_1: ionic strength: 50 mM; pH: 7.0; pressure: 1 atm; temperature: 310 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D HN(COCA)CB | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN, Bruker Biospin - collection
NMR spectrometers:
- Bruker Avance 600 MHz
- Bruker Avance 700 MHz
Related Database Links:
BMRB | 18306 |
PDB | |
DBJ | BAD97181 BAG36096 |
EMBL | CAH90732 |
GB | AAD45360 AAH47767 AAH69688 AAH69764 AAT44388 |
REF | NP_001125408 NP_006780 XP_001117195 XP_003266357 XP_003897628 |
SP | Q694B4 Q9Y235 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts