BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

Validation Tools

Depositors of protein depositions are strongly encouraged to use the various validation software listed below to check their NMR experimental data and structure files before uploading them.

Validation reports

Validation reports: collections of AVS, LACS, and SPARTA generated files for published BMRB entries

Pre-deposition data validation services

Chemical Shift vs Coordinate nomenclature check A tool to check Assigned Chemical Shift nomenclature versus Coordinate file nomenclature. This tool runs the same checks as will be run later when you deposit atomic coordinates with ADIT-NMR.

Visualization server will generate DEVise visualizations for uploaded NMR-STAR 3.1 data tables.

Protein Structure Validation Suite (PSVS) is a useful tool for the assesment of protein structures generated by NMR and X-ray methods. PSVS is broadly applicable for structure quality assessment in structure biology projects.

iCing Validation Package is part of the Common Interface for NMR structure Generation (CING) package.

CheckShift - Chemical Shift Reference Check at Center of Applied Molecular Engineering, the University of Salzburg, Austria. It works on NMR-STAR 2.1, SHIFTX or TALOS files.

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Downloadable data validation software

LACS 64-bit linux binary (requires Matlab runtime), Matlab source code, and python wrappers. (Reference: PubMed.)

Wattos is a software package consisting of programs for analyzing, annotating, parsing, archiving, and disseminating experimental NMR data deposited by authors world wide into the PDB.