Depositors of protein depositions are strongly encouraged to use the various validation software listed
below to check their NMR experimental data and structure files before uploading them.
Validation reports: collections of AVS, LACS, and
SPARTA generated files for published BMRB entries
Pre-deposition data validation services
Chemical Shift vs Coordinate nomenclature check
A tool to check Assigned Chemical Shift nomenclature versus Coordinate file nomenclature. This tool runs the same checks as
will be run later when you deposit atomic coordinates with ADIT-NMR.
Visualization server will generate DEVise visualizations for
uploaded NMR-STAR 3.1 data tables.
Protein Structure Validation Suite (PSVS) is a useful tool for the assesment
of protein structures generated by NMR and X-ray methods. PSVS is broadly applicable for structure quality assessment in structure
iCing Validation Package is part of the Common Interface for
NMR structure Generation (CING) package.
CheckShift - Chemical Shift Reference Check at Center of Applied Molecular
Engineering, the University of Salzburg, Austria. It works on NMR-STAR 2.1, SHIFTX or TALOS files.
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Downloadable data validation software
LACS 64-bit linux binary (requires Matlab runtime), Matlab source code,
and python wrappers. (Reference: PubMed.)
Wattos is a software package consisting of programs for analyzing,
annotating, parsing, archiving, and disseminating experimental NMR data deposited by authors world wide into the PDB.