BMRB Entry 10047
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10047
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Title: Solution Structure of the Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)
Deposition date: 2006-11-09 Original release date: 2008-08-13
Authors: Kamatari, Y.; Tochio, N.; Nameki, N.; Miyamoto, K.; Li, H.; Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation: Kamatari, Y.; Tochio, N.; Nameki, N.; Miyamoto, K.; Li, H.; Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)" . ., .-..
Assembly members:
homeobox domain, polymer, 76 residues, Formula weight is not available
Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: cell free synthesis
Entity Sequences (FASTA):
homeobox domain: GSSGSSGKRKTKEQLAILKS
FFLQCQWARREDYQKLEQIT
GLPRPEIIQWFGDTRYALKH
GQLKWFRDNASGPSSG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 330 |
| 15N chemical shifts | 73 |
| 1H chemical shifts | 513 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Homeobox leucine zipper protein Homez | 1 |
Entities:
Entity 1, Homeobox leucine zipper protein Homez 76 residues - Formula weight is not available
| 1 | GLY | SER | SER | GLY | SER | SER | GLY | LYS | ARG | LYS | ||||
| 2 | THR | LYS | GLU | GLN | LEU | ALA | ILE | LEU | LYS | SER | ||||
| 3 | PHE | PHE | LEU | GLN | CYS | GLN | TRP | ALA | ARG | ARG | ||||
| 4 | GLU | ASP | TYR | GLN | LYS | LEU | GLU | GLN | ILE | THR | ||||
| 5 | GLY | LEU | PRO | ARG | PRO | GLU | ILE | ILE | GLN | TRP | ||||
| 6 | PHE | GLY | ASP | THR | ARG | TYR | ALA | LEU | LYS | HIS | ||||
| 7 | GLY | GLN | LEU | LYS | TRP | PHE | ARG | ASP | ASN | ALA | ||||
| 8 | SER | GLY | PRO | SER | SER | GLY |
Samples:
sample_1: homeobox domain, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 13C-separated NOESY | sample_1 | not available | condition_1 |
| 3D 15N-separated NOESY | sample_1 | not available | condition_1 |
Software:
xwinnmr v2.6, Bruker - collection
NMRPipe v20020425, Delaglio, F. - processing
NMRView v5.0.4, Johnson, B. A. - data analysis
Kujira v0.8998, Kobayashi, N. - data analysis
CYANA v2.0.17, Guntert, P. - refinement, structure solution
NMR spectrometers:
- Bruker AVANCE 800 MHz
Related Database Links:
| PDB | |
| DBJ | BAA92681 BAC98171 BAG10069 BAG59479 BAG63292 |
| GB | AAH84701 AAH85694 AAH94669 AAI30393 AAM94347 |
| REF | NP_001171176 NP_065885 NP_690062 NP_898997 XP_001102279 |
| SP | Q80W88 Q8IX15 Q8K3E9 |
| TPG | DAA25845 |
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