BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10066

Title: Solution structure of the third PDZ domain of human KIAA1526 protein

Deposition date: 2006-12-25 Original release date: 2008-08-14

Authors: Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.

Citation: Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.. "Solution structure of the third PDZ domain of human KIAA1526 protein"  . ., .-..

Assembly members:
PDZ domain, polymer, 103 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
PDZ domain: GSSGSSGTLVRVKKSAATLG IAIEGGANTRQPLPRIVTIQ RGGSAHNCGQLKVGHVILEV NGLTLRGKEHREAARIIAEA FKTKDRDYIDFLVTEFNSGP SSG

Data sets:
Data typeCount
13C chemical shifts406
15N chemical shifts88
1H chemical shifts660

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1KIAA1526 protein1

Entities:

Entity 1, KIAA1526 protein 103 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYTHRLEUVAL
2   ARGVALLYSLYSSERALAALATHRLEUGLY
3   ILEALAILEGLUGLYGLYALAASNTHRARG
4   GLNPROLEUPROARGILEVALTHRILEGLN
5   ARGGLYGLYSERALAHISASNCYSGLYGLN
6   LEULYSVALGLYHISVALILELEUGLUVAL
7   ASNGLYLEUTHRLEUARGGLYLYSGLUHIS
8   ARGGLUALAALAARGILEILEALAGLUALA
9   PHELYSTHRLYSASPARGASPTYRILEASP
10   PHELEUVALTHRGLUPHEASNSERGLYPRO
11   SERSERGLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.2 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v200204025, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v2.0.14, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAA96050 BAB14275 BAI45560
EMBL CAB53685
GB AAI36417 AAI42615 AAI42685 EAW87420 EAW87421
REF NP_001077354 NP_001166896 NP_056219 XP_001096493 XP_003911373
SP Q9P202

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts