BMRB Entry 11076

Name: NMR based model structure of mesoderm development (MESD) in solution.
Published: 2011-06-03

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PDB ID: 2rqk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11076
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: NMR based model structure of mesoderm development (MESD) in solution. PubMed: 21397185

Deposition date: 2009-08-05 Original release date: 2011-06-03

Authors: Koehler, Christian; Lighthouse, Janet; Werther, Tobias; Andersen, Olav; Diehl, Annette; Schmieder, Peter; Holdener, Bernadette; Oschkinat, Hartmut

Citation: Kohler, Christian; Lighthouse, Janet; Werther, Tobias; Andersen, Olav; Diehl, Annette; Schmieder, Peter; Du, Jianguang; Holdener, Bernadette; Oschkinat, Hartmut. "The structure of MESD45-184 brings light into the mechanism of LDLR family folding." Structure 19, 337-348 (2011).

Assembly members:
MESD polymer chain, polymer, 141 residues, Formula weight is not available

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
MESD polymer chain: GDIRDYNDADMARLLEQWEK DDDIEEGDLPEHKRPSAPID FSKLDPGKPESILKMTKKGK TLMMFVTVSGNPTEKETEEI TSLWQGSLFNANYDVQRFIV GSDRAIFMLRDGSYAWEIKD FLVSQDRCAEVTLEGQMYPG K

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
heteronucl_T1_relaxation
- heteronuclear_T1_list_1
heteronucl_T2_relaxation
- heteronuclear_T2_list_1
RDCs
- RDC_list_1

Data type	Count
13C chemical shifts	460
15N chemical shifts	133
1H chemical shifts	863
residual dipolar couplings	36
T1 relaxation values	94
T2 relaxation values	94

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC No.1	sample_3	isotropic	sample_conditions_1
2D 1H-15N HSQC No.2	sample_4	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D CBCANNH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACO	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HCCH-COSY	sample_2	isotropic	sample_conditions_1
3D H(CCCO)NH-TOCSY	sample_1	isotropic	sample_conditions_1
3D (H)CC(CO)NH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC coupled	sample_3	anisotropic	sample_conditions_1
2D 1H-15N HSQC 15N_T1-edited	sample_3	isotropic	sample_conditions_1
2D 1H-15N HSQC 15N_T2-edited	sample_3	isotropic	sample_conditions_1

Entrez Gene	67943
UNP	Q9ERE7
BMRB	16213
PDB	2I9S 2KGL 2KMI 2RQK 2RQM 3OFH
DBJ	BAB25865 BAC27617 BAC36471 BAC36476
GB	AAG33621 AAH14742 AAH85892 EDL06865 EDL06866
REF	NP_001008346 NP_075892 XP_001928898 XP_003511746 XP_004658300
SP	Q5U2R7 Q9ERE7

Biological Magnetic Resonance Data Bank

BMRB Entry 11076

Title: NMR based model structure of mesoderm development (MESD) in solution. PubMed: 21397185

Additional metadata:

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Entities:

Samples:

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